Metagenome / Metatranscriptome Family F052314

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F052314
Family Type	Metagenome / Metatranscriptome
Number of Sequences	142
Average Sequence Length	53 residues
Representative Sequence	FLAGLIAMPILGVGLFFGGAKEAMAALFGHVALGAILGMVARLPDRSVQQRPL
Number of Associated Samples	84
Number of Associated Scaffolds	142

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.41 %
% of genes near scaffold ends (potentially truncated)	96.48 %
% of genes from short scaffolds (< 2000 bps)	92.25 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (80.282 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (55.634 % of family members)
Environment Ontology (ENVO)	Unclassified (86.620 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (55.634 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.91% β-sheet: 0.00% Coil/Unstructured: 53.09%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 142 Family Scaffolds
PF07992	Pyr_redox_2	74.65
PF03358	FMN_red	2.82
PF00106	adh_short	1.41
PF06314	ADC	1.41
PF12536	DUF3734	1.41
PF11066	DUF2867	0.70
PF13561	adh_short_C2	0.70
PF07508	Recombinase	0.70
PF03237	Terminase_6N	0.70
PF00126	HTH_1	0.70
PF06776	IalB	0.70

COG ID	Name	Functional Category	% Frequency in 142 Family Scaffolds
COG4689	Acetoacetate decarboxylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.41
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.70
COG5342	Invasion protein IalB, involved in pathogenesis	General function prediction only [R]	0.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.28 %
Unclassified	root	N/A	19.72 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.28 %
Unclassified	root	N/A	19.72 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.28 %
Unclassified	root	N/A	19.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.61 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.72 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8.45 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.70 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.70 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.72 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.23 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.70 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.70 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.72 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.82 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.70 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.70 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.70 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.72 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.11 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.70 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.70 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.70 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.72 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.41 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.70 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.70 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.70 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.72 %
Bradyrhizobium sp. WSM2254	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM2254	1.41 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.70 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.70 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.70 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.70 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000580\|AF_2010_repII_A01DRAFT_1018599	All Organisms → cellular organisms → Bacteria → Proteobacteria	1109	Open in IMG/M
3300004629\|Ga0008092_10057657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2236	Open in IMG/M
3300004633\|Ga0066395_10052119	Not Available	1815	Open in IMG/M
3300005363\|Ga0008090_10150498	All Organisms → cellular organisms → Bacteria → Proteobacteria	658	Open in IMG/M
3300005445\|Ga0070708_100569468	All Organisms → cellular organisms → Bacteria → Proteobacteria	1068	Open in IMG/M
3300010048\|Ga0126373_10165911	All Organisms → cellular organisms → Bacteria	2113	Open in IMG/M
3300010048\|Ga0126373_10383951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1425	Open in IMG/M
3300010359\|Ga0126376_11413364	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300010359\|Ga0126376_12132777	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300010359\|Ga0126376_12989000	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300010361\|Ga0126378_11807717	Not Available	695	Open in IMG/M
3300010361\|Ga0126378_12419683	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300010376\|Ga0126381_100428084	All Organisms → cellular organisms → Bacteria → Proteobacteria	1851	Open in IMG/M
3300010376\|Ga0126381_102344036	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300010398\|Ga0126383_10030635	All Organisms → cellular organisms → Bacteria	4266	Open in IMG/M
3300010398\|Ga0126383_13132690	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300012971\|Ga0126369_10167770	All Organisms → cellular organisms → Bacteria	2083	Open in IMG/M
3300016270\|Ga0182036_10512568	All Organisms → cellular organisms → Bacteria → Proteobacteria	951	Open in IMG/M
3300016270\|Ga0182036_10738242	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300016270\|Ga0182036_10807553	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300016294\|Ga0182041_10084816	All Organisms → cellular organisms → Bacteria → Proteobacteria	2277	Open in IMG/M
3300016319\|Ga0182033_10942506	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300016341\|Ga0182035_11175441	Not Available	684	Open in IMG/M
3300016341\|Ga0182035_11826166	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300016357\|Ga0182032_10593671	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300016357\|Ga0182032_10968790	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300016357\|Ga0182032_11740526	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300016371\|Ga0182034_10228249	Not Available	1456	Open in IMG/M
3300016371\|Ga0182034_10378896	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300016371\|Ga0182034_11931108	Not Available	521	Open in IMG/M
3300016387\|Ga0182040_11577585	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300016404\|Ga0182037_10859185	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300016404\|Ga0182037_11545374	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300016404\|Ga0182037_11816514	Not Available	545	Open in IMG/M
3300016422\|Ga0182039_10747659	Not Available	865	Open in IMG/M
3300021476\|Ga0187846_10378972	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300021560\|Ga0126371_12463468	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300031543\|Ga0318516_10375783	All Organisms → cellular organisms → Bacteria → Proteobacteria	819	Open in IMG/M
3300031544\|Ga0318534_10012339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4338	Open in IMG/M
3300031544\|Ga0318534_10521141	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300031544\|Ga0318534_10717596	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300031545\|Ga0318541_10692799	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300031546\|Ga0318538_10432599	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300031549\|Ga0318571_10362258	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300031572\|Ga0318515_10356165	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300031573\|Ga0310915_10224520	Not Available	1318	Open in IMG/M
3300031573\|Ga0310915_10508645	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300031640\|Ga0318555_10018176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3262	Open in IMG/M
3300031668\|Ga0318542_10482790	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300031680\|Ga0318574_10111110	All Organisms → cellular organisms → Bacteria	1529	Open in IMG/M
3300031680\|Ga0318574_10127911	Not Available	1430	Open in IMG/M
3300031680\|Ga0318574_10808436	Not Available	549	Open in IMG/M
3300031681\|Ga0318572_10018350	All Organisms → cellular organisms → Bacteria	3467	Open in IMG/M
3300031681\|Ga0318572_10845480	Not Available	544	Open in IMG/M
3300031713\|Ga0318496_10082611	All Organisms → cellular organisms → Bacteria	1705	Open in IMG/M
3300031724\|Ga0318500_10179574	Not Available	1007	Open in IMG/M
3300031744\|Ga0306918_11250131	Not Available	572	Open in IMG/M
3300031744\|Ga0306918_11423837	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300031747\|Ga0318502_10521267	Not Available	713	Open in IMG/M
3300031748\|Ga0318492_10788130	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300031751\|Ga0318494_10450779	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300031751\|Ga0318494_10505529	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300031765\|Ga0318554_10068858	All Organisms → cellular organisms → Bacteria → Proteobacteria	1958	Open in IMG/M
3300031770\|Ga0318521_10008097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4339	Open in IMG/M
3300031770\|Ga0318521_10261005	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300031771\|Ga0318546_10092153	All Organisms → cellular organisms → Bacteria → Proteobacteria	1975	Open in IMG/M
3300031771\|Ga0318546_10114463	Not Available	1784	Open in IMG/M
3300031771\|Ga0318546_10354946	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300031771\|Ga0318546_10446476	Not Available	905	Open in IMG/M
3300031777\|Ga0318543_10478204	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300031778\|Ga0318498_10229913	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300031779\|Ga0318566_10318551	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300031781\|Ga0318547_10925789	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300031792\|Ga0318529_10115347	All Organisms → cellular organisms → Bacteria → Proteobacteria	1220	Open in IMG/M
3300031793\|Ga0318548_10080571	All Organisms → cellular organisms → Bacteria	1538	Open in IMG/M
3300031794\|Ga0318503_10177786	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300031797\|Ga0318550_10601278	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300031798\|Ga0318523_10025983	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	2609	Open in IMG/M
3300031798\|Ga0318523_10240818	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300031821\|Ga0318567_10230642	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300031833\|Ga0310917_10223120	All Organisms → cellular organisms → Bacteria	1264	Open in IMG/M
3300031879\|Ga0306919_10285154	All Organisms → cellular organisms → Bacteria	1250	Open in IMG/M
3300031879\|Ga0306919_10781316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM2254	734	Open in IMG/M
3300031879\|Ga0306919_11229353	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300031879\|Ga0306919_11474552	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300031890\|Ga0306925_10261627	All Organisms → cellular organisms → Bacteria	1864	Open in IMG/M
3300031890\|Ga0306925_11062765	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300031890\|Ga0306925_11493116	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300031890\|Ga0306925_11620255	Not Available	628	Open in IMG/M
3300031896\|Ga0318551_10608476	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300031897\|Ga0318520_10074186	Not Available	1853	Open in IMG/M
3300031897\|Ga0318520_10903598	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300031910\|Ga0306923_10308308	All Organisms → cellular organisms → Bacteria	1808	Open in IMG/M
3300031910\|Ga0306923_11044631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	884	Open in IMG/M
3300031910\|Ga0306923_11440953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM2254	723	Open in IMG/M
3300031910\|Ga0306923_11973633	Not Available	593	Open in IMG/M
3300031912\|Ga0306921_11481892	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300031912\|Ga0306921_11632713	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300031912\|Ga0306921_11818837	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300031912\|Ga0306921_11974220	Not Available	622	Open in IMG/M
3300031941\|Ga0310912_10389760	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300031941\|Ga0310912_10490472	All Organisms → cellular organisms → Bacteria → Proteobacteria	958	Open in IMG/M
3300031941\|Ga0310912_10994699	Not Available	643	Open in IMG/M
3300031942\|Ga0310916_11152852	Not Available	642	Open in IMG/M
3300031942\|Ga0310916_11220049	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300031945\|Ga0310913_11214525	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300031946\|Ga0310910_10117405	All Organisms → cellular organisms → Bacteria	1997	Open in IMG/M
3300031946\|Ga0310910_11284757	Not Available	566	Open in IMG/M
3300031947\|Ga0310909_10097035	All Organisms → cellular organisms → Bacteria → Proteobacteria	2363	Open in IMG/M
3300031954\|Ga0306926_10401157	Not Available	1692	Open in IMG/M
3300031959\|Ga0318530_10184220	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300032001\|Ga0306922_10561580	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300032001\|Ga0306922_10650147	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300032001\|Ga0306922_11172184	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300032008\|Ga0318562_10113078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1548	Open in IMG/M
3300032008\|Ga0318562_10397757	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300032010\|Ga0318569_10138463	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
3300032025\|Ga0318507_10261824	Not Available	751	Open in IMG/M
3300032035\|Ga0310911_10623779	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300032039\|Ga0318559_10155440	All Organisms → cellular organisms → Bacteria	1040	Open in IMG/M
3300032043\|Ga0318556_10275280	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300032043\|Ga0318556_10324926	Not Available	804	Open in IMG/M
3300032043\|Ga0318556_10635128	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300032051\|Ga0318532_10326864	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300032054\|Ga0318570_10239990	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300032063\|Ga0318504_10296079	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300032064\|Ga0318510_10071919	Not Available	1270	Open in IMG/M
3300032064\|Ga0318510_10384965	All Organisms → cellular organisms → Bacteria → Proteobacteria	595	Open in IMG/M
3300032067\|Ga0318524_10240573	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300032067\|Ga0318524_10250854	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	911	Open in IMG/M
3300032068\|Ga0318553_10112094	All Organisms → cellular organisms → Bacteria	1396	Open in IMG/M
3300032076\|Ga0306924_10385027	Not Available	1606	Open in IMG/M
3300032094\|Ga0318540_10300542	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300032094\|Ga0318540_10602217	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300032261\|Ga0306920_100768565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1416	Open in IMG/M
3300032261\|Ga0306920_103179201	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300032261\|Ga0306920_104046479	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300033289\|Ga0310914_10445307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1172	Open in IMG/M
3300033289\|Ga0310914_11069631	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300033290\|Ga0318519_10182716	All Organisms → cellular organisms → Bacteria	1189	Open in IMG/M
3300033290\|Ga0318519_10589967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	674	Open in IMG/M
3300033290\|Ga0318519_11048291	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.30%
Cave	Environmental → Terrestrial → Cave	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	97.89%
Loam	Environmental → Terrestrial → Soil → Loam	1.41%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	87.32%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.15%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.70%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	55.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.15%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.41%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.70%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.70%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300004629	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A01 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10185991	3300000580	Forest Soil	WLRGVIFMTAIWFLAGLIAMPILGVGLFFGGVKEAIAALIGHVALGAILGSIARLPDRSIQTVPLGIRR*
Ga0008092_100576571	3300004629	Tropical Rainforest Soil	LGVGLFFGGVKEAIAALIGHVALGAILGLIARLPDRSIQTVLL*
Ga0066395_100521191	3300004633	Tropical Forest Soil	VGLFFGGAKEAMAALFGHVALGAILGMVARLPDRLIQQRPL*
Ga0008090_101504982	3300005363	Tropical Rainforest Soil	LGVGLFFGGAKEAMAALIGHVVFGAILGLVARLPERSVELRPV*
Ga0070708_1005694681	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VLFMAGVWFFAGLVAMPILGVGLFFGGAKEAMAALLGHIVLGAVLGMVTRLPQRRVHGVL
Ga0126373_101659114	3300010048	Tropical Forest Soil	RGIIFMAAVWFLAGLIAMPILGVGLFFGGAKEAMAALFGHVALGAILGMVARLPDRLIQQRPL*
Ga0126373_103839512	3300010048	Tropical Forest Soil	VIVGPYLPGPVWLRGVIFMTAIWFLAGLIAMPVLGVGLFFGGAKEAMAALFGHVVLGAILGMFARLPDRSIHQRPL*
Ga0126376_114133642	3300010359	Tropical Forest Soil	YLPGPTWVRGVTFMAGVWFLAGLIAMPILGVGLFFGGPKEAMAALIGHVVFGVILGLFVRLPSRLIQGRLR*
Ga0126376_121327771	3300010359	Tropical Forest Soil	FFGGAKEAMAALIGHVVFGAILGLVVRLPERSVQQRPL*
Ga0126376_129890001	3300010359	Tropical Forest Soil	LLAGLIAMPVLGVGLFFGGAKEAIAALFGHGALGAILGMIARLPDRSVQQRPL*
Ga0126378_118077172	3300010361	Tropical Forest Soil	RGVIFMAGVWLFVGLVVMPILGVGLFFGGAREAMASLLGHIVLGAVLGMIARLSSHRILEAV*
Ga0126378_124196832	3300010361	Tropical Forest Soil	LAGLFAMPILGVGLFFGGAKEAMAALFGHVALGAILGMVARLPDRSIQQRPL*
Ga0126381_1004280841	3300010376	Tropical Forest Soil	TAIWFLAGVIAMPILRVGLFFGGAKEAMAALFGHVALGAILGMVARLPDRYIQQGPL*
Ga0126381_1023440362	3300010376	Tropical Forest Soil	AGVWFFAGLVAMPILGVGLFFGGAKEAMASLLGHVVLGAILGTIARLPSRRIVEVN*
Ga0126383_100306354	3300010398	Tropical Forest Soil	VGLFFGGAKEAMAALIGHVVFGAILGMVARLPERSVQLRPV*
Ga0126383_131326901	3300010398	Tropical Forest Soil	FLAGLIAMPVLGVGLFFGGAKEAMAALFGHVALGAILGMVARLPDRSIQQRPL*
Ga0126369_101677704	3300012971	Tropical Forest Soil	WFLAGLIAMPILGVGLFFGGIKEAMAALFGHAALGAILGMVARLPDRLIQQRPL*
Ga0182036_105125682	3300016270	Soil	VPTRNGPGRLRGVIFLVAVWFLAGLIAMPILGVGLFFGGAKEAMAALLGHVVLGAVLGSVARLPDRSLQQRSL
Ga0182036_107382421	3300016270	Soil	LIAMPVLGVGLFFGGAKEAMAALIGHVVFGAILGMVARLPERSVQLRPV
Ga0182036_108075532	3300016270	Soil	AGLVAMPILGVGLFFGGAKEATAALFGHVALGAILGMVARLPDRSGHQWPL
Ga0182041_100848163	3300016294	Soil	IVGPYLPGAVWLRGVIFMVGVWLIVGLIVMPILGGGLFFGGPKEATAALGGHVVFGAILGTIARLPSRPIDGTP
Ga0182033_109425063	3300016319	Soil	LLFGGAKEAMAALIGHVVFGAILGMVARLPERSVQLRPV
Ga0182035_111754411	3300016341	Soil	VIWFLGGLIAMPVLGVGLFFGGAREAIAALFGHVALGAILGIVTRLPDRSI
Ga0182035_118261661	3300016341	Soil	LGVGLFFVRAKEAMAALIGLIVFGAILGMVARLSDRSLQRRRLYDIRR
Ga0182032_105936712	3300016357	Soil	GLFFGGPKEAMAALIGHVVFGAILGMVARLPERSVQLRPV
Ga0182032_109687902	3300016357	Soil	AIWFLAGLIAMPILGVGLFFGGAKEAMAALFGHVALGAILGMVARLPDRSIQQRPL
Ga0182032_117405262	3300016357	Soil	AVWFLAGLIAMPVLGVGLFFGGAKEAMAALIGHVVFGAILGLVVRLPERSVQLRPV
Ga0182034_102282492	3300016371	Soil	VGLFFGGAKEAIAALFGHIVLGAILGMVARLPDRSIQQRPL
Ga0182034_103788962	3300016371	Soil	WLRGVIFMAAIWFLAGLIAMPVLRVGLFFGGAKEAIAALLGHVALGAILGMVARLPDRYIQQGPL
Ga0182034_119311081	3300016371	Soil	GWLRGVIFLAAVWFLAGLIAMPILGVGLFFGGAKEAMAALLGHVVLGAVLDSVARLPDRSVRHRPYDIRR
Ga0182040_115775852	3300016387	Soil	MTAIWLLAGLIAMPVLGVGLFFGGAKEAMAALFGHVALGAVLGMVARLPDRAVQQRPL
Ga0182037_108591851	3300016404	Soil	LAGLIAMPVLGVGLFFGGAKEAMAALIGHVVFGAILGMVARLPERSVQLRPV
Ga0182037_115453742	3300016404	Soil	AGLIAMPILGVGLFFGGAKEAMAALFGHVALGAILGIVARLPDRSGHQSPL
Ga0182037_118165141	3300016404	Soil	GPYLPGPVWLRGVTFMAGVWFIAGLVAMPILGVGLFFGGVKEAMAALIGHAVLGAILGTIVRLPSRGIYTATP
Ga0182039_107476592	3300016422	Soil	AVWFLAGLIAMPILGVGLFFGGAKEAMAALLGHVVLGAVLGSVARLPDRSLQQRSL
Ga0187846_103789722	3300021476	Biofilm	AIWFLAGLIAMPVLGIGLFFGGAKEAMAALLGHVVLGAILGMVARLPDRSIRPI
Ga0126371_124634681	3300021560	Tropical Forest Soil	WFLAGLIAMPVLGVGLFFGGAKEAMAALFGHVVLGAILGMFARLPDRSIHQRPL
Ga0318516_103757831	3300031543	Soil	VGPYLPGPIWLRGVIFMAGVWFLAGLIAMPILGVGLFFGGAREAMAALIGHVAFGAILGAIARLPSRHVQAWSLR
Ga0318534_100123391	3300031544	Soil	VIFLAAVWFLAGLIAMPILGVGLFFGGAKEAMAALLGHVVLGAVLGSVARLPDRSVRHRP
Ga0318534_105211412	3300031544	Soil	VVWFLAGLIAMPILGVGLFFGGAKEAMAALFGHVALGAVLGMVARLPDRAVQQRPL
Ga0318534_107175962	3300031544	Soil	VIFMTAIWFLAGLIAMPILGVGLFFGGAKEAIAALFGHIVLGAILGMVARLPDRSIQQRP
Ga0318541_106927992	3300031545	Soil	IWFLAGLIAMPILGVGLFFGGAKEAMAALFGHVALGAILGMVARLPDRSIQQRPL
Ga0318538_104325992	3300031546	Soil	IWFLAGLIAMPILGVGLFFGGAKEAIAALIGHVALGAILGMVARLPDRSIQQRPL
Ga0318571_103622582	3300031549	Soil	IAMPVLGVGLFFGGAKEAMAALIGHVVFGAILGMVARLPERSVQLRPV
Ga0318515_103561651	3300031572	Soil	IAMPILGVGLFFGGIKEAMAALFGHAALGAILGMVARLPDRLIQQRSL
Ga0310915_102245201	3300031573	Soil	MAAVWFLAGLIAMPVLGVGLFFGGAKEAMVALFGHVVLGAILGMVARLPVRSVQHRPS
Ga0310915_105086451	3300031573	Soil	ILGVGFFFGGAREAMAALIGHVVFGAILGVSARLPSRHVQAWSR
Ga0318555_100181764	3300031640	Soil	AGLIAMPVLGVGLFFGGAKEAMAALIGHVVFGAILGMVARLPERSVQLRPV
Ga0318542_104827901	3300031668	Soil	AAVWFLAGLIAMPVLGVGLFFGGAKEAMAALIGHVVFGAILGMVARLPERSVQLRPV
Ga0318574_101111102	3300031680	Soil	MAAVWFLAGLIAMPVLGVGLFFGGAKEAMAALIGHVVFGAILGMVARLPERSVQLRPV
Ga0318574_101279111	3300031680	Soil	VLRVGLFFGGAKEAIAALLGHVALGAILGMVARLPDRYIQQGPL
Ga0318574_108084362	3300031680	Soil	WFLGGLIAMPVLGVGLFFGGAREAIAALFGHVALGAILGIVTRLPDRSI
Ga0318572_100183504	3300031681	Soil	VIFMAAVWFLAGLIAMPVLGVGLFFGGAKEAMAALIGHVVFGAILGMVARLPERSVQLRP
Ga0318572_108454801	3300031681	Soil	GVGLFFGGAKEAMAALFGHVALGAILGMVARLPDRSIQQRPS
Ga0318496_100826113	3300031713	Soil	VWFLAGLIAMPVLGVGLFFGGAKEAMAALIGHVVFGAILGMVARLPERSVQLRPV
Ga0318500_101795741	3300031724	Soil	VAVWFLAGLIAMPILGVGLFFGGAKEAMAALLGHVVLGAVLGSVARLPDRSVRHRPL
Ga0306918_112501311	3300031744	Soil	LGVGLFFGGPREAMAALIGHVVFGAILGAIARLPSRHVREQSL
Ga0306918_114238372	3300031744	Soil	AFMAAVWLLAGLIAMPILGVGLFFGGAKEATAALFGHVALGAILGMVARLPDRSVQQRPI
Ga0318502_105212671	3300031747	Soil	MAGVWLLAGLVAMPLLGVGLFFGGAKEAMAALLGHVLLGAILGTIARLPSRRIPGTTT
Ga0318492_107881302	3300031748	Soil	VLGVGLFFGGAKEAMVALFGHVVLGAILGMVARLPVRSVQHRPS
Ga0318494_104507792	3300031751	Soil	LLAGLIAMPVLGVGLFFGGAKEAIAALFGHGALGAILGMIARLPDRSVQQRPL
Ga0318494_105055292	3300031751	Soil	RGVTFMTGVWFLGGVIAMPILGVGLFFGGAKEAMAAFFGHVALGAILGMVARLPDRSVH
Ga0318554_100688583	3300031765	Soil	MTAIWLLAGLIAMPVLGVGLFFGGAKEAIAALFGHGALGAILGMIARLPDRSVQQRPL
Ga0318521_100080971	3300031770	Soil	GVGLFFGGAKEAMAALIGHVVFGAILGMVARLPERSVQLRPV
Ga0318521_102610052	3300031770	Soil	IWFLAGLIAMPILGVGLFFGGTKEAMAALFGHVALGAILGIVARLPDRSIQQRPL
Ga0318546_100921531	3300031771	Soil	VWLRGVIFMVGVWLIVGLIVMPILGGGLFFGGPKEATAALGGHVVFGAILGTIARLPSRPIDGTP
Ga0318546_101144633	3300031771	Soil	WSLAGLIAMPVLRVGLFFGGAKEAIAALLGHVALGAILGMVARLPDRYIQQGPL
Ga0318546_103549462	3300031771	Soil	VIFMTAIWLLAGLIAMPVLGVGLFFGGAKEAIAALFGHGALGAILGMIARLPDRSVQQRP
Ga0318546_104464761	3300031771	Soil	FLAAVWFLAGLIAMPILGVGLFFGGAKEAMAALLGHVVLGAVLGSVARLPDRSVQHRPL
Ga0318543_104782042	3300031777	Soil	LIAMPILGVGFFFGGAREAMAALIGHVVFGAILGVSARLPSRHVQAWSR
Ga0318498_102299131	3300031778	Soil	GLIAMPVLGVGLFFGGAKEAMAALIGHVVFGAILGMVARLPERSVQLRPV
Ga0318566_103185512	3300031779	Soil	GVWFLAGLIAMPILGVGFFFGGAREAMAALIGHVVFGAILGVSARLPSRHVQAWSR
Ga0318547_109257891	3300031781	Soil	VIFLAAIWFLAGLIAMPILGVGLFFGGAKEAIAALIGHVALGAILGMVARLPDRLIQQRP
Ga0318529_101153471	3300031792	Soil	ICLRGVTFMVGVWFLAGLIAMPILGVGFFFGGAREAMAALIGHVVFGAILGVSARLPSRHVQAWSR
Ga0318548_100805711	3300031793	Soil	GLFFGGAKEAMAALIGHVVFGAILGMVARLPERSVQLRPV
Ga0318503_101777862	3300031794	Soil	LIAMPVLRVGLFFGGAKEAMAALLGHVALGAILGMVARLPDRYIQQGPL
Ga0318550_106012781	3300031797	Soil	PFLFMAAVWFLAGLIAMPILGVGLFFGGAKEAMAALFGHVALGAILGMVARLPDRSVQQRPL
Ga0318523_100259831	3300031798	Soil	LLAGLIAMPILGVGLFFGGAKEAIAALFGHGALGAILGMIARLPDRSVQQRPL
Ga0318523_102408181	3300031798	Soil	IIFMAAVWFLAGLIAMPILGVGLFFGGIKEAMAALFGHAALGAILGMVARLPDRLIQQRP
Ga0318567_102306422	3300031821	Soil	IGLFFGGAKEAIAALFGHGALGAILGMIARLPDRSVQQRPL
Ga0310917_102231202	3300031833	Soil	CLGVGFFFGGAREAMAALLGQVVFGAILGVIARLPSRHVQAWSR
Ga0306919_102851542	3300031879	Soil	WLRGGVFMAAVWFLAGLIAMPILGVGLFFGGAKEAMAALFGHVALGAILGMVARLPDRSVQQRPL
Ga0306919_107813161	3300031879	Soil	LRGVTFTTVIWFLAGLIAMPVLGVGLFFGGAKEAIAALFGHVALGAILGIIARLPERSI
Ga0306919_112293532	3300031879	Soil	AGLIAMPILGVGLFFGGPKEAIAALVGHVVLGAILGLVARLPERPILRRPT
Ga0306919_114745521	3300031879	Soil	VTFMTGVWFLGGVIAMPILGVGLFFGGAKEAMAAFFGHVALGAILGMVARLPDRSVH
Ga0306925_102616273	3300031890	Soil	LAGLVAMPILGVGLFFGGPKEATAALLGHIVLGAILGLIARLPDRLVYQQL
Ga0306925_110627652	3300031890	Soil	VVFMAAVWLLAGLIAMPILGVGLFFGGAKEAMAALFGHVALGAILGMVARLPDRSVQQRP
Ga0306925_114931161	3300031890	Soil	VPTRNGPGRLRGVIFLVAVWFLAGLIAMPILGVGLFFGGAKEAMAALLGHVVLGAVLDSVARLPDRSVRH
Ga0306925_116202552	3300031890	Soil	VAVWFLASLIAMPILGVGLFFGGAKEAMAALLGHVVLGAVLGSVARLPDRSLQQRSL
Ga0318551_106084761	3300031896	Soil	GWLRGVIFLAAIWFLAGLIAMPILGVGLFFGGPKEAIAALVGHVVLGAILGLVARLPERPILHRPT
Ga0318520_100741864	3300031897	Soil	AIWLLAGLIAMPVLGVGLFFGGAKEALAALFGHGALGAILGMIARLPDRSVQQRPL
Ga0318520_109035981	3300031897	Soil	LGVGLFFGGPKEATAALLGHIVLGAILGLIARLPDRLVYQQL
Ga0306923_103083081	3300031910	Soil	VLGVGLFFGGAKEAMAALIGHVVFGAILGMVARLPERSVQLRPV
Ga0306923_110446311	3300031910	Soil	VLGVGLFFGGPKEAMAALIGHVVFGAILGMVARLPERSVQLRPV
Ga0306923_114409531	3300031910	Soil	IWFLAGLIAMPVLGVGLFFGGAKEAIAALFGHVALGAILGIIARLPERSI
Ga0306923_119736331	3300031910	Soil	VAMPILGVGLFFGGVKEAMAALIGHAVLGAILGTIVRLPSRGIYTATP
Ga0306921_114818921	3300031912	Soil	FLAGLIAMPILGVGLFFGGAKEAIAALFGHVALGAILGMVARLPDRSMQQRSL
Ga0306921_116327132	3300031912	Soil	MPILGVGLFFGGAKEAMAALFGHVALGAILGMVARLPDRSIQQRPL
Ga0306921_118188371	3300031912	Soil	GLFFGGIKEAMAALFGHAALGAILGMVARLPDRLIQQRPL
Ga0306921_119742201	3300031912	Soil	AMPLLGVGLFFGGAKEAMAALLGHVLLGAILGTIARLPSRRILGTTT
Ga0310912_103897601	3300031941	Soil	LFFGGAKEATAALFGHVALGAILGMVARLPDRSVQQRPI
Ga0310912_104904722	3300031941	Soil	MAVVWFLAGLIAMPILGVGLFFGGAKEAMAALFGHVALGAVLGMVARLPDRAVQQRPL
Ga0310912_109946991	3300031941	Soil	RNGPGRLRGVIFLVAVWFLAGLIAMPILGVGLFFGGAKEAMAALLGHVVLGAVLDSVARLPDRSVRHRPYDIRR
Ga0310916_111528521	3300031942	Soil	GVGLFFGGAKEAIAALIGHVVLGAILGTVARLPDRSIQQQPS
Ga0310916_112200491	3300031942	Soil	FLAGLIAMPILGVGLFFGGAKEAMAALFGHVALGAILGMVARLPDRSVQQRPL
Ga0310913_112145252	3300031945	Soil	GLFFGGAKEAMAALIGHVVFGAILGLVARLPERSVQLRPV
Ga0310910_101174051	3300031946	Soil	GLIAMPILGVGFFFGGAREAMAALIGHVVFGAILGVSARLPSRHVQAWSR
Ga0310910_112847572	3300031946	Soil	IFMVGVWLFVGLVVMPILGVGLFFGGAREAMASLLGHIVLGAVLGMIARLPSHRILEAL
Ga0310909_100970351	3300031947	Soil	MAVVWFLAGLIAMPILGVGLFFGGAKEAMAALFGHVALGAVLGMVARLPDRA
Ga0306926_104011572	3300031954	Soil	GLIAMPILGVGLFFGGAKEATAALFGHVALGAILGMVARLPDRSVQQRPI
Ga0318530_101842201	3300031959	Soil	MPILGVGLFFGGPKEATAALLGHIVLGAILGLIARLPDRLVYQQL
Ga0306922_105615801	3300032001	Soil	FLAGLIAMPVLGVGLFFGGAKEAMAALIGHVVFGAILGMVARLPERSVQLRPV
Ga0306922_106501471	3300032001	Soil	FFGGIKEAMAALFGHAALGAILGMVARLPDRLIQQRPL
Ga0306922_111721841	3300032001	Soil	GVIFMAAIWFLAGLIAMPILGVGLFFGGTKEAMAALFGHVALGAILGIVARLPDRSIQQRPL
Ga0318562_101130781	3300032008	Soil	LGVGLFFGGPKEAMAALIGHVVFGAILGMVARLPERSVQLRPV
Ga0318562_103977572	3300032008	Soil	FLAGLIAMPILGVGLFFGGVREAMASLMGHVVLGAILGAIARLPSRRVQEWSH
Ga0318569_101384632	3300032010	Soil	GVIAMPILGVGLFFGGAKEAMAAFFGHVALGAILGMVARLPDRSVH
Ga0318507_102618242	3300032025	Soil	FLAGLIAMPILGVGLFFGGAKEAMAALLGHVVLGAVLGSVARLPDRSVRHRPL
Ga0310911_106237792	3300032035	Soil	WLRGVIFMVAIWFLAGLIAMPILGVGLFFGGAKEAMAALFGHVALGAILGMVARLPDRSIQQRPL
Ga0318559_101554402	3300032039	Soil	LLAGLIAMPILGVGLFFGGAKEATAALFGHVALGAILGMVARLPDRSVQQRPI
Ga0318556_102752801	3300032043	Soil	MTGVWFLGGVIAMPILGVGLFFGGAKEAMAAFFGHVALGAILGMVARLPDRSVH
Ga0318556_103249262	3300032043	Soil	LIAMPILGVGLFFGGPKEAMAALIGHVVFGVILGLFARLPSGLIQGRLR
Ga0318556_106351282	3300032043	Soil	GWLRGVIFMAAIWFLAGLIAMPILGVGLFFGGAKEAMAALFGHVALGAILGMVARLPDRSIQRRPL
Ga0318532_103268641	3300032051	Soil	WLRGVIFMVAIWFLAGLIAMPILGVGLFFGGAKEAMAALFGHVALGAILGMVARLPDRSIQRRPL
Ga0318570_102399901	3300032054	Soil	TGVWFLGGVIAMPILGVGLFFGGAKEAMAAFFGHVALGAILGMVARLPDRSVH
Ga0318504_102960792	3300032063	Soil	GLIAMPVLGVGLFFGGAKEAIAALFGHGALGAILGMIARLPDRSVQQRPL
Ga0318510_100719192	3300032064	Soil	PVLGVGLFFGGAKEAMAALIGHVVFGAILGMVARLPERSVQLRPV
Ga0318510_103849652	3300032064	Soil	FVIVGPYLPGPDWLRGVIFMAAIWFLAGLIAMPVLRVGLFFGGAKEAIAALLGHVALGAILGMVARLPDRYIQQGPL
Ga0318524_102405731	3300032067	Soil	IFMTAIWLLAGLIAMPVLGVGLFFGGAKEAIAALFGHGALGAILGMIARLPDRSVQQRPL
Ga0318524_102508542	3300032067	Soil	MPLLGVGLFFGGAKEAMAALLGHVLLGAILGTIARLPSRRILGTTT
Ga0318553_101120942	3300032068	Soil	FLAGLVAMPVLGVGLFFGGAKEAMAALIGHVVFGAILGMVARLPERSVQLRPV
Ga0306924_103850271	3300032076	Soil	AMPVLGVGLFFGGAKEAMAALIGHVVFGAILGMVARLPERSVQLRPV
Ga0318540_103005421	3300032094	Soil	LGVGLFFGGAKEAIAALFGHGALGAILGMIARLPDRSVQQRPL
Ga0318540_106022171	3300032094	Soil	IAMPILGVGLFFGGIKEAMAALFGHAALGAILGMVARLPDRLIQQRPL
Ga0306920_1007685651	3300032261	Soil	LFFGGTREAMAALIGHVVFGAILGAIARLPSRHVREQLL
Ga0306920_1031792012	3300032261	Soil	PVWLRGVIFMAGVWLFVGLVVMPILGVGLFFGGAREAMASLSGHIVLGAVLGMIARMPSRRALEAL
Ga0306920_1040464792	3300032261	Soil	PGPVWLRGVIFMTAIWFLAGLIAMPVLGVGLFFGGAKEATAALFGHVVLGAILGMFARLPDRSIQQRPL
Ga0310914_104453074	3300033289	Soil	YLPGPVWLRGVTFMTVIWFLAGLIAMPVLGVGLFFGGAKEAIAALFGHVALGAILGIIARLPERSI
Ga0310914_110696311	3300033289	Soil	LIAMPILGVGLFFGGAKEAMVALFGHVVLGAILGMVARLPVRSVQHRPS
Ga0318519_101827161	3300033290	Soil	PILGVGLFFGGAKEAMAALFGHVALGAILGMVARLPDRSVQQRPL
Ga0318519_105899673	3300033290	Soil	IAMPVLGVGLFFGGAKEAIAALFGHVALGAILGIIARLPERSI
Ga0318519_110482911	3300033290	Soil	FGGAKEAMAALIGHVVFGAILGMVARLPERSVQLRPV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F052314

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences