Metagenome / Metatranscriptome Family F052030

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F052030
Family Type	Metagenome / Metatranscriptome
Number of Sequences	143
Average Sequence Length	51 residues
Representative Sequence	MPVDPRPAMPIVPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT
Number of Associated Samples	114
Number of Associated Scaffolds	143

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	63.91 %
% of genes near scaffold ends (potentially truncated)	27.27 %
% of genes from short scaffolds (< 2000 bps)	82.52 %
Associated GOLD sequencing projects	110
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (58.042 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.476 % of family members)
Environment Ontology (ENVO)	Unclassified (30.769 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.748 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.81% β-sheet: 0.00% Coil/Unstructured: 51.19%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 143 Family Scaffolds
PF00873	ACR_tran	13.29
PF00589	Phage_integrase	2.80
PF07883	Cupin_2	1.40
PF06912	DUF1275	1.40
PF01522	Polysacc_deac_1	0.70
PF00231	ATP-synt	0.70
PF00190	Cupin_1	0.70
PF01068	DNA_ligase_A_M	0.70
PF11251	DUF3050	0.70
PF05853	BKACE	0.70
PF04632	FUSC	0.70
PF03061	4HBT	0.70

COG ID	Name	Functional Category	% Frequency in 143 Family Scaffolds
COG3619	Uncharacterized membrane protein YoaK, UPF0700 family	Function unknown [S]	1.40
COG0224	FoF1-type ATP synthase, gamma subunit	Energy production and conversion [C]	0.70
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.70
COG1289	Uncharacterized membrane protein YccC	Function unknown [S]	0.70
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.70
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.70
COG3246	Uncharacterized conserved protein, DUF849 family	Function unknown [S]	0.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.04 %
All Organisms	root	All Organisms	41.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.04 %
cellular organisms	root	All Organisms → cellular organisms	41.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.04 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.04 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.57 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.40 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.40 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.04 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	31.47 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.40 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.40 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.04 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.29 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.10 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.40 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.40 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.04 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	4.20 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.10 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.40 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	1.40 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.70 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.70 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.04 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	4.20 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.10 %
Paludibaculum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum	1.40 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.70 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.70 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.70 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.04 %
Mesorhizobium plurifarium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	3.50 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.10 %
Paludibaculum fermentans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	1.40 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.70 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.70 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.70 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.70 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.04 %
Mesorhizobium plurifarium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	3.50 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.10 %
Paludibaculum fermentans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	1.40 %
Mesorhizobium sp. STM 4661	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. STM 4661	0.70 %
Actinomadura madurae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	0.70 %
Nocardia brasiliensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia brasiliensis	0.70 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.70 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.70 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000732\|JGI12023J11887_1010709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	545	Open in IMG/M
3300001661\|JGI12053J15887_10000028	All Organisms → cellular organisms → Bacteria → Proteobacteria	36727	Open in IMG/M
3300002568\|C688J35102_117808452	Not Available	507	Open in IMG/M
3300004643\|Ga0062591_102043054	Not Available	592	Open in IMG/M
3300005148\|Ga0066819_1013193	Not Available	621	Open in IMG/M
3300005162\|Ga0066814_10043522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	717	Open in IMG/M
3300005163\|Ga0066823_10020995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1016	Open in IMG/M
3300005164\|Ga0066815_10123065	Not Available	506	Open in IMG/M
3300005330\|Ga0070690_100195750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	1404	Open in IMG/M
3300005332\|Ga0066388_100454382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1922	Open in IMG/M
3300005333\|Ga0070677_10758982	Not Available	551	Open in IMG/M
3300005356\|Ga0070674_100246772	All Organisms → cellular organisms → Bacteria	1400	Open in IMG/M
3300005356\|Ga0070674_101932076	Not Available	537	Open in IMG/M
3300005436\|Ga0070713_100423887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1246	Open in IMG/M
3300005439\|Ga0070711_100577209	Not Available	936	Open in IMG/M
3300005540\|Ga0066697_10120358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1539	Open in IMG/M
3300005549\|Ga0070704_101162876	Not Available	702	Open in IMG/M
3300005564\|Ga0070664_100261100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	1558	Open in IMG/M
3300005616\|Ga0068852_100095212	Not Available	2673	Open in IMG/M
3300005764\|Ga0066903_100745380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1738	Open in IMG/M
3300005840\|Ga0068870_10049324	Not Available	2220	Open in IMG/M
3300005844\|Ga0068862_100411800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1267	Open in IMG/M
3300005844\|Ga0068862_102563588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia brasiliensis	522	Open in IMG/M
3300005937\|Ga0081455_10019694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6374	Open in IMG/M
3300006038\|Ga0075365_10106509	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1924	Open in IMG/M
3300006038\|Ga0075365_10548487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	818	Open in IMG/M
3300006038\|Ga0075365_10808607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	661	Open in IMG/M
3300006042\|Ga0075368_10548123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	520	Open in IMG/M
3300006048\|Ga0075363_100866719	Not Available	552	Open in IMG/M
3300006049\|Ga0075417_10625622	Not Available	549	Open in IMG/M
3300006057\|Ga0075026_100463957	Not Available	723	Open in IMG/M
3300006195\|Ga0075366_10448915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	795	Open in IMG/M
3300006844\|Ga0075428_100195649	Not Available	2186	Open in IMG/M
3300006844\|Ga0075428_100263430	All Organisms → cellular organisms → Bacteria → Proteobacteria	1856	Open in IMG/M
3300006845\|Ga0075421_100314253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1901	Open in IMG/M
3300006969\|Ga0075419_10309046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1067	Open in IMG/M
3300009094\|Ga0111539_11751790	Not Available	720	Open in IMG/M
3300009094\|Ga0111539_13288841	Not Available	520	Open in IMG/M
3300009094\|Ga0111539_13304566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	519	Open in IMG/M
3300009100\|Ga0075418_10174121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2291	Open in IMG/M
3300009100\|Ga0075418_10476980	All Organisms → cellular organisms → Bacteria	1338	Open in IMG/M
3300009100\|Ga0075418_12279164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	591	Open in IMG/M
3300009100\|Ga0075418_12814316	Not Available	531	Open in IMG/M
3300009147\|Ga0114129_12490521	Not Available	619	Open in IMG/M
3300009148\|Ga0105243_12347190	Not Available	571	Open in IMG/M
3300010040\|Ga0126308_10718268	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300010159\|Ga0099796_10581219	Not Available	504	Open in IMG/M
3300010358\|Ga0126370_12191446	Not Available	544	Open in IMG/M
3300010362\|Ga0126377_11091764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	866	Open in IMG/M
3300012211\|Ga0137377_10961685	Not Available	785	Open in IMG/M
3300012212\|Ga0150985_106105523	Not Available	509	Open in IMG/M
3300012212\|Ga0150985_110740095	Not Available	702	Open in IMG/M
3300012212\|Ga0150985_112543378	Not Available	1531	Open in IMG/M
3300012212\|Ga0150985_112815990	Not Available	754	Open in IMG/M
3300012212\|Ga0150985_113691287	Not Available	877	Open in IMG/M
3300012212\|Ga0150985_113756922	Not Available	707	Open in IMG/M
3300012469\|Ga0150984_101543487	Not Available	599	Open in IMG/M
3300012891\|Ga0157305_10280971	Not Available	514	Open in IMG/M
3300012915\|Ga0157302_10376967	Not Available	577	Open in IMG/M
3300012941\|Ga0162652_100070112	Not Available	596	Open in IMG/M
3300012951\|Ga0164300_10302150	Not Available	838	Open in IMG/M
3300012960\|Ga0164301_11903434	Not Available	503	Open in IMG/M
3300013105\|Ga0157369_10574526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1164	Open in IMG/M
3300013306\|Ga0163162_10839525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. STM 4661	1034	Open in IMG/M
3300013307\|Ga0157372_12226712	Not Available	630	Open in IMG/M
3300014325\|Ga0163163_10113213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2743	Open in IMG/M
3300015371\|Ga0132258_10090395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7177	Open in IMG/M
3300015371\|Ga0132258_12497108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1293	Open in IMG/M
3300015371\|Ga0132258_13088774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1151	Open in IMG/M
3300015371\|Ga0132258_13216370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1126	Open in IMG/M
3300015372\|Ga0132256_100117984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2614	Open in IMG/M
3300015373\|Ga0132257_100977718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1064	Open in IMG/M
3300015373\|Ga0132257_101601173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	833	Open in IMG/M
3300015373\|Ga0132257_102674988	Not Available	649	Open in IMG/M
3300015374\|Ga0132255_101488260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1024	Open in IMG/M
3300017792\|Ga0163161_11289281	Not Available	635	Open in IMG/M
3300017965\|Ga0190266_10022411	All Organisms → cellular organisms → Bacteria	1875	Open in IMG/M
3300018000\|Ga0184604_10010340	All Organisms → cellular organisms → Bacteria	1952	Open in IMG/M
3300018000\|Ga0184604_10316951	Not Available	552	Open in IMG/M
3300018027\|Ga0184605_10018282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2783	Open in IMG/M
3300018051\|Ga0184620_10190583	Not Available	678	Open in IMG/M
3300018066\|Ga0184617_1030199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	1278	Open in IMG/M
3300018076\|Ga0184609_10023548	All Organisms → cellular organisms → Bacteria	2468	Open in IMG/M
3300018469\|Ga0190270_10240238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1567	Open in IMG/M
3300018476\|Ga0190274_10709909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1051	Open in IMG/M
3300019356\|Ga0173481_10512449	Not Available	613	Open in IMG/M
3300020005\|Ga0193697_1070222	Not Available	860	Open in IMG/M
3300020016\|Ga0193696_1131756	Not Available	628	Open in IMG/M
3300021082\|Ga0210380_10226927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	846	Open in IMG/M
3300021363\|Ga0193699_10231067	Not Available	769	Open in IMG/M
3300021363\|Ga0193699_10340478	Not Available	625	Open in IMG/M
3300021510\|Ga0222621_1117284	Not Available	566	Open in IMG/M
3300021968\|Ga0193698_1024021	Not Available	800	Open in IMG/M
3300021968\|Ga0193698_1055767	Not Available	503	Open in IMG/M
3300025315\|Ga0207697_10263220	Not Available	764	Open in IMG/M
3300025900\|Ga0207710_10343158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	760	Open in IMG/M
3300025910\|Ga0207684_10117738	All Organisms → cellular organisms → Bacteria	2276	Open in IMG/M
3300025915\|Ga0207693_10239420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1425	Open in IMG/M
3300025916\|Ga0207663_10468355	Not Available	974	Open in IMG/M
3300025933\|Ga0207706_10112712	Not Available	2393	Open in IMG/M
3300025986\|Ga0207658_10935660	Not Available	790	Open in IMG/M
3300026843\|Ga0208126_1007031	Not Available	515	Open in IMG/M
3300027866\|Ga0209813_10466246	Not Available	519	Open in IMG/M
3300027909\|Ga0209382_11607490	Not Available	642	Open in IMG/M
3300027909\|Ga0209382_12228585	Not Available	517	Open in IMG/M
3300028592\|Ga0247822_11069298	Not Available	669	Open in IMG/M
3300028608\|Ga0247819_10697505	Not Available	620	Open in IMG/M
3300028708\|Ga0307295_10008875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2357	Open in IMG/M
3300028712\|Ga0307285_10006360	All Organisms → cellular organisms → Bacteria	2428	Open in IMG/M
3300028713\|Ga0307303_10121641	Not Available	611	Open in IMG/M
3300028717\|Ga0307298_10036961	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	1314	Open in IMG/M
3300028718\|Ga0307307_10132211	Not Available	773	Open in IMG/M
3300028778\|Ga0307288_10379926	Not Available	573	Open in IMG/M
3300028782\|Ga0307306_10130924	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	687	Open in IMG/M
3300028796\|Ga0307287_10313057	Not Available	593	Open in IMG/M
3300028799\|Ga0307284_10347317	Not Available	600	Open in IMG/M
3300028802\|Ga0307503_10528909	Not Available	640	Open in IMG/M
3300028814\|Ga0307302_10083382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1515	Open in IMG/M
3300028819\|Ga0307296_10127370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1371	Open in IMG/M
3300028828\|Ga0307312_11122523	Not Available	520	Open in IMG/M
3300028875\|Ga0307289_10193102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	837	Open in IMG/M
3300028885\|Ga0307304_10443743	Not Available	590	Open in IMG/M
3300030923\|Ga0138296_1634085	Not Available	631	Open in IMG/M
3300031114\|Ga0308187_10413414	Not Available	536	Open in IMG/M
3300031199\|Ga0307495_10103321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	679	Open in IMG/M
3300031231\|Ga0170824_106207967	Not Available	574	Open in IMG/M
3300031820\|Ga0307473_10930855	Not Available	630	Open in IMG/M
3300031908\|Ga0310900_10744574	Not Available	788	Open in IMG/M
3300032013\|Ga0310906_10692888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	711	Open in IMG/M
3300032174\|Ga0307470_11300117	Not Available	596	Open in IMG/M
3300032180\|Ga0307471_104270840	Not Available	505	Open in IMG/M
3300032205\|Ga0307472_100236811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1420	Open in IMG/M
3300034643\|Ga0370545_091210	Not Available	650	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.04%
Host-Associated	Host-Associated	41.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.05%
Plants	Host-Associated → Plants	41.96%
Aquatic	Environmental → Aquatic	6.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.98%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.38%
Sediment	Environmental → Aquatic → Sediment	6.29%
Roots	Host-Associated → Plants → Roots	5.59%
Freshwater	Environmental → Aquatic → Freshwater	0.70%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	9.79%
Loam	Environmental → Terrestrial → Soil → Loam	9.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.29%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.59%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.59%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	4.90%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.70%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.70%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	9.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.29%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.59%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	4.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.20%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.40%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.70%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.70%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.70%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.70%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	24.48%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.59%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.59%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.90%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	4.90%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.50%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.10%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.10%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.40%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.40%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.40%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.40%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.40%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.40%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.70%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.70%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.70%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.70%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.70%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.70%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.70%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.70%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.70%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.70%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000732	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005148	Soil and rhizosphere microbial communities from Laval, Canada - mgLMA	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300021968	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c1	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026843	Soil and rhizosphere microbial communities from Laval, Canada - mgHAA (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030923	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12023J11887_10107091	3300000732	Forest Soil	MPVDLRPAIPTLPARQGALNAHRESLVAKLATCITVLIATIAVLIVA
JGI10216J12902_1158124671	3300000956	Soil	RRDRLVTSLATFVTVLTAAVAVLIVAAAAVAFTIT*
JGI12053J15887_1000002833	3300001661	Forest Soil	MPVDPRPAMPIVPPRQVAFRTRRTWLLAKLATCVTVLTAATAVLIVAAAAVAFTIT*
C688J35102_1178084521	3300002568	Soil	VASRPAMPIVPPRQAAFRTRRAWLLAKLATSVTVLTAATAVVIVAAAAVAFTIT*
Ga0062591_1020430541	3300004643	Soil	MPVDPRPAMPIVPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT*
Ga0066819_10131931	3300005148	Soil	PPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT*
Ga0066814_100435222	3300005162	Soil	VPPRQVAFRTRRTWLLAKLATCVTVLTAATAVLIVAAAAVAFTMT*
Ga0066823_100209953	3300005163	Soil	RGEPSMPVDPRPAMPIIPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT*
Ga0066815_101230651	3300005164	Soil	MPIVPPRQVAFRTRRTWLLAKLATCVTVLTAATAVLIVAAAAVAFTMT*
Ga0070690_1001957503	3300005330	Switchgrass Rhizosphere	MPVDPRPAMPIIPPRQAAFRTRRTWLLAKLATSVTVLTAAIAVLIVAAAAVAFTIT*
Ga0066388_1004543821	3300005332	Tropical Forest Soil	LPARRGAFRARRDWLVSGLATCVTVLAATVAVLIVAAAAVTFTIT*
Ga0070677_107589821	3300005333	Miscanthus Rhizosphere	MPVDPRPAMPIIPPRQAAFRTRRTWLLAKLATSVTVLTAAIAVLIVAAAA
Ga0070674_1002467723	3300005356	Miscanthus Rhizosphere	MPIVPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT*
Ga0070674_1019320761	3300005356	Miscanthus Rhizosphere	MPVASRPAMPIVPPRQAAFRTRRNWLLAKLATSVTVLTAATAVVIVAAAAVAFTIT*
Ga0070713_1004238873	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSVNGRPAIPTLPARRGAHRARRDWLLTRLATCITVLAAAVAVLIVAAAAVTFTIT*
Ga0070713_1024126891	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	QGPLKGHRDALVARLATFITVLTAAIAVLIVAAAAVALAIT*
Ga0070711_1005772093	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MPVDPRPAMPIIPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAA
Ga0066697_101203583	3300005540	Soil	MSVNGRPAIPALPVRRGAHRARRDWLLTRLATCITVLAAAVAVLIVAAAAVTFTIT*
Ga0070704_1011628762	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MPVDPRPAMPIIPPRQSAFRTRRTWLLAKLATSVTVLTAAIAVLIVAAAAVAFTIT*
Ga0070664_1002611006	3300005564	Corn Rhizosphere	MPVASRPAMPIVPPRQAAFRTRRTWLLAKLATSVTVLMAATAVVIVAAAAVAFTIT*
Ga0068852_1000952122	3300005616	Corn Rhizosphere	MPVDPRPAMPIVPPRQAAFRTRRTWLLAKLATSVTVLAAATDVLIVAAAAVAFTIT*
Ga0066903_1007453801	3300005764	Tropical Forest Soil	MSVNGRPAIPALPARRGAHRARRDWLLTRLATCITVLAAAVAVLIVAAAAVTFTIT*
Ga0068870_100493244	3300005840	Miscanthus Rhizosphere	MPVASRPAMPIVPPRQAAFRTRRTWLLAKLATSVTVLTAAIAVLIVAAAAVAFTIT*
Ga0068862_1004118002	3300005844	Switchgrass Rhizosphere	MPVDPRPAMPIIPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT*
Ga0068862_1025635881	3300005844	Switchgrass Rhizosphere	AHSRRGEPSMPVDPRPAMPIVPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT*
Ga0081455_100196945	3300005937	Tabebuia Heterophylla Rhizosphere	MPIQPRPAMPALPARRGAFRARRDWLMSGLATCVTVLAATVAVLIVAAAAVTFTIT*
Ga0075365_101065095	3300006038	Populus Endosphere	MSVDPRPAMPSLPVRRAAFRARRDWFVTLVATCVTVLTAAIAVLIVAAAAVTFTMT*
Ga0075365_105484872	3300006038	Populus Endosphere	PMPIQPRPAMPALPARRGAFRARRDWLVSGLATCVTVLAATVAVLIVAAAAVTFTIT*
Ga0075365_108086072	3300006038	Populus Endosphere	MSVGSRPAMPTMPARQPAFRVRRDRLVTSLATFVTVLTAVVAVLIVAAAAVAFTIT*
Ga0075368_105481231	3300006042	Populus Endosphere	MPIVPPRQAAFRTRRTWLLAKLATSVTVLTAATAVVIVAAAAVAFTIT*
Ga0075363_1008667192	3300006048	Populus Endosphere	MPIVPPRQAAFRSRRTWLLAKLATSVTVLTAATAVVIVAAAAVAFTIT*
Ga0075417_106256222	3300006049	Populus Rhizosphere	MSVGSRPAMPTMPARQPAFRARRDRLVTSLATFVTVLTAAVAVLVVAAAAVAFTIT*
Ga0075026_1004639571	3300006057	Watersheds	MPVDPRPAMPIVPPRQVAFRTRRTWLLAKLATCVTVLTAATAVLIVAAAAVAFTMT*
Ga0075366_104489154	3300006195	Populus Endosphere	MPVASRPAMPIVPPRQAAFRTRRTWLLAKLATSVTVLMAATAVVIVAAAAVA
Ga0075428_1001956494	3300006844	Populus Rhizosphere	MSVGSRPAMPRQPAFRARRDRLVTSLATFVTVLTAAVAVLVVAAAAVAFTIT*
Ga0075428_1002634303	3300006844	Populus Rhizosphere	MSAGSRPAMPTMPPRQAAFRARRDRLVTSLATFVTVLTAAVAVLIVAAAAVAFTIT*
Ga0075421_1003142534	3300006845	Populus Rhizosphere	MSVGSRPAMPTMPARQPAFRARRDRLVTSLATFVTVLTAAVAVLIVAAAAVAFTIT*
Ga0075426_111335142	3300006903	Populus Rhizosphere	HRDALLARLATCITVLTAAIAVLIVAAAAVALAIT*
Ga0075424_1006398583	3300006904	Populus Rhizosphere	RTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT*
Ga0075419_103090463	3300006969	Populus Rhizosphere	MSVGSRPAMPTMPARQPAFRARRDRLVTSLATFVTVLTAAVVVLIVAAAAVAFTIT*
Ga0111539_117517901	3300009094	Populus Rhizosphere	MPTMSARQPAFWDRRDRLDNRLATFVTALTAAVAVLIVAAAAVGFTIT*
Ga0111539_132888411	3300009094	Populus Rhizosphere	MPALPARRGAFRARRDWLMSGLATCVTVLAATVAVLIVAAAAVTFTIT*
Ga0111539_133045662	3300009094	Populus Rhizosphere	MPALPARRGAFRARRDWLVSGLATCVTVLAATVAVLIVAAAAVTFTIT*
Ga0075418_101741213	3300009100	Populus Rhizosphere	MPTMPPRQAAFRARRDRLVTSLATFVTVLTAAVAVLIVAASAVAFTIT*
Ga0075418_104769803	3300009100	Populus Rhizosphere	MPRQPAFRARRDRLVTSLATFVTVLTAAVAVLVVAAAAVAFTIT*
Ga0075418_114531882	3300009100	Populus Rhizosphere	RVRRDRLVTSLATFVTVLTAAVAVLIAAAAAVAFTIT*
Ga0075418_122791641	3300009100	Populus Rhizosphere	MPARQPAFRVRRDRLVTSLATFVTVLTAVVAVLIVAAAAVAFTIT*
Ga0075418_128143161	3300009100	Populus Rhizosphere	MPALPVRRGAVRARRDWLVSGLATCITVLAATVAVLIVAAAAVTFTIT*
Ga0114129_124905211	3300009147	Populus Rhizosphere	AFRARRDRLVTSLATFVTVLTAAVAVLIVAAAAVAFTIT*
Ga0105243_123471902	3300009148	Miscanthus Rhizosphere	MPVDPRPAMPIIPPRQAAFRTRRTWLLAKLATSVTVLTAATAVVIVAAAAVAFTIT*
Ga0126308_107182683	3300010040	Serpentine Soil	SMPVDPRPAMPIIPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT*
Ga0099796_105812191	3300010159	Vadose Zone Soil	MPVYPRPAMPIVPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT*
Ga0126370_121914461	3300010358	Tropical Forest Soil	MPIQPRPAMPALPARRGAFRARRDWLVSGLATCVTVLAATVAVLIVAAAAVTFTIT*
Ga0126377_110917642	3300010362	Tropical Forest Soil	MPALPARRGAFRARRDWLVSGLATCITVLAATVAVLIVAAAAVTFTIT*
Ga0137377_109616852	3300012211	Vadose Zone Soil	MSVNERPAIPTLPARRGAHRARRDWLLTRLATCITVLAAAVAVLIVAAAAVTFTIT*
Ga0150985_1061055231	3300012212	Avena Fatua Rhizosphere	PRPAMPIIPPRQAAFRTRRTWLLAKLATSVTVLTAATAVVIVAAAAVAFTIT*
Ga0150985_1107400952	3300012212	Avena Fatua Rhizosphere	MPIVPPRQAAFRTRRNWLLAKLATSVTVLTAATAVVIVAAAAVAFTIT*
Ga0150985_1125433782	3300012212	Avena Fatua Rhizosphere	MPVDPRPAMPIIPPRQAAFRTRQSWMLAKLATSVTVLTAATAVLIVAAAAVAFTIT*
Ga0150985_1128159901	3300012212	Avena Fatua Rhizosphere	MPIVPPRQAAFRTRRAWLLAKLATSVTVLTAATAVVIVAAAAVAFTIT*
Ga0150985_1136912873	3300012212	Avena Fatua Rhizosphere	MSVDPRPAMPIIPPRQAAFRTRRTWLLAKLATSVTVLTAAIAVLIVAAAAVAFTIT*
Ga0150985_1137569222	3300012212	Avena Fatua Rhizosphere	MPVDPRPAMPTIPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT*
Ga0137372_105973561	3300012350	Vadose Zone Soil	HRQGALKAYRDSLVARLAACITVLTSAIAVLIVAAAAVAFAIT*
Ga0150984_1015434872	3300012469	Avena Fatua Rhizosphere	MPIIPPRQAAFRTRRTWLLAKLATSVTVLTAAIAVLIVAAAAVAFTIT*
Ga0157305_102809711	3300012891	Soil	MPIIPPRQAAFRTRRTWLLAKLATSVTVLTAATAVVIVAAAAVAFTIT*
Ga0157302_103769672	3300012915	Soil	MPVDPRPAMPIIPPRQAAFRTRRTWLLAKLATSVTVLTAAIAVMIVAAAAVAFTIT*
Ga0162652_1000701122	3300012941	Soil	MPIIPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVA
Ga0164300_103021503	3300012951	Soil	MPIIPPRQAAFRTRRTWLLAKLATSVTVLTAATAVVIVAAAA
Ga0164301_119034341	3300012960	Soil	AMPIIPPRQAAFRTRRTWLLAKLATSVTVLTAATAVVIVAAAAVAFTIT*
Ga0157369_105745263	3300013105	Corn Rhizosphere	DPRPAMPIVPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT*
Ga0163162_108395253	3300013306	Switchgrass Rhizosphere	MPVDPRPAMPIVPPRQAAFRARRNWLVAQLATCVTVLAAAAAVLIV
Ga0157372_122267122	3300013307	Corn Rhizosphere	MPIVPPRQAAFRTRRTWLLAKRATSVTVLTAATAVLIVAAAAVAFTIT*
Ga0163163_101132133	3300014325	Switchgrass Rhizosphere	MPVDSRPAMPIIPPRQAAFRTRRTWLLAKLATSVTVLTAAIAVLIVAAAAVAFTIT*
Ga0132258_1009039510	3300015371	Arabidopsis Rhizosphere	MPRQPAFRARRDRLVTGLATFVTVLTAAVAVLIVAAAAVAFTIT*
Ga0132258_124971083	3300015371	Arabidopsis Rhizosphere	MPALPARRRAFRARRDWLVSGLATCVTVLAATVAVLIVAAAAVTFTIT*
Ga0132258_130887742	3300015371	Arabidopsis Rhizosphere	MPIMPPRQPAFRSRRDRLVTSLATFITVLTAAVAVLIVAAAAVAFTIT*
Ga0132258_132163702	3300015371	Arabidopsis Rhizosphere	MPTMPARQPAFRARRDRLVTSLATFVTVLTAAVAVLIVAAAAVGFTIT*
Ga0132256_1001179842	3300015372	Arabidopsis Rhizosphere	MPIMPPRQPAFRARRDRLVTSLATFITVLTAAVAVLIVAAAAVAFTIT*
Ga0132257_1009777182	3300015373	Arabidopsis Rhizosphere	MPIMPPRQPAFRSRRDRLVTSLATFITVLTAAVAVLIVAAAAVGFTIT*
Ga0132257_1016011731	3300015373	Arabidopsis Rhizosphere	MPTMPARQPAFRARRDRLVTSLATFVTVLTAAVAVLIAAAAAVAFTVT*
Ga0132257_1026749882	3300015373	Arabidopsis Rhizosphere	MPARQPAFRARRDQLVTRLATCITVLTAAIAVLIVAAAAVAFTIT*
Ga0132255_1014882601	3300015374	Arabidopsis Rhizosphere	RPAMPTMPARQPAFRARRDRLVTSLATFVTVLTAAVAVLIVAAAAVGFTIT*
Ga0163161_112892811	3300017792	Switchgrass Rhizosphere	MPVDPRPAMPIIPPRQAAFRTRRTWLLAKLATSVTVLTAAIAVLIVAAAAVAFTIT
Ga0190266_100224113	3300017965	Soil	MPVDPRPAMPTIPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT
Ga0184604_100103404	3300018000	Groundwater Sediment	MPVDPRPAMPIVPPRQVAFRTRRTWLLAKLATCVTVLTAATAVLIVAAAAVAFTMT
Ga0184604_103169511	3300018000	Groundwater Sediment	MPVDPRPAMPIIPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT
Ga0184605_100182825	3300018027	Groundwater Sediment	MPVDPRPAMPIVPPRQVAFRTRRTWLLAKLATCVTALTAATAVLIVAAAAVAFTMT
Ga0184620_101905832	3300018051	Groundwater Sediment	MPVDPRPAMPTIPPRQAAFRTRRTWRLAKLATSVTVLTAATAVLIVAAAAVAFTIT
Ga0184617_10301992	3300018066	Groundwater Sediment	MPVDPRPAMPIVPPRQVAFRTRRAWLLAKLATCVTVLTAATAVLIVAAAAVAFTMT
Ga0184609_100235483	3300018076	Groundwater Sediment	MPVDPRPAMPIVPPRQVAFRTRQTWLLAKLATCVTVLTAATAVLIVAAAAVAFTMT
Ga0184609_104518761	3300018076	Groundwater Sediment	VVTARDAVADWLVSRLATCITVLTAGIAVLIVAAAAVAFTIT
Ga0190270_102402381	3300018469	Soil	MPTIPPRQAAFSTRRTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT
Ga0190274_107099091	3300018476	Soil	MPVASRPAMPIVPPRQAAFRTRRAWLLAKLATSVTVLTAATAVVIVAAAAVAFTIT
Ga0173481_105124492	3300019356	Soil	MPVDPRPAMPIVPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT
Ga0193697_10702221	3300020005	Soil	MPADPRPAMPIVPPRQVAFRTRRTWLLAKLGTCVTVLTAATAVLIVAAAAVAFTMT
Ga0193696_10394961	3300020016	Soil	FRTRRTWLLAKLGTCVTVLTAATAVLIVAAAAVAFTMT
Ga0193696_11317562	3300020016	Soil	MPARQPAFRARRDQLVTRLATCITVLTAAIAVLIVAAAAVAFTIT
Ga0210380_102269271	3300021082	Groundwater Sediment	MPVDPRPAMPIVPPRQVAFRTRRTWLVAKLATCVTVLTAATAVLIVAAAAVAFTMT
Ga0193699_102310672	3300021363	Soil	MPVDPRPAMPIVPPRQVAFRTRRTWLLAKLATCVTVLTAATAVLIVAAAAVAFTIT
Ga0193699_103404781	3300021363	Soil	MSVGLRSAIPTMPARQPAFRARRDQLVTRLATCITVLTAAIAVLIVAAAAVAFAIT
Ga0222621_11172842	3300021510	Groundwater Sediment	MPVDPRPAMPIVPPRQVAFRTRRTWLLAKLATCVTVLTAATAVLIVAAAAVAFT
Ga0193698_10240211	3300021968	Soil	MPVDPRPAMPIVPPRQVAFRTRRTWLLAKLATCVTVLTAATAVLIVAAAAVAFIMT
Ga0193698_10557671	3300021968	Soil	MSVGLRSAMPTMPARQPAFRVRRDQLVTRLATCITVLTAAIAVLIVAATAVAFTIT
Ga0207697_102632202	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MPVDPRPAMPIVPPRQAAFRTRRTWLLAKLATSVTVLTAAIAVLIVAAAAVAFTIT
Ga0207710_103431582	3300025900	Switchgrass Rhizosphere	AAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT
Ga0207684_101177385	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MPVHLLPAIPTVPARQGPLKGHRDALVARLATFITVLTAAIAVLIVAAA
Ga0207693_102394203	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSVNGRPAIPTLPARRGAHRARRDWLLTRLATCITVLAAAVAVLIVAAAAVTFTIT
Ga0207663_104683552	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MPVDPRPAMPIVPPRQAAFRTRRTWLLAKLATSVTVLTAATAVVIVAAAAVAFTIT
Ga0207706_101127121	3300025933	Corn Rhizosphere	MPVDPRPAMPIVPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAA
Ga0207658_109356603	3300025986	Switchgrass Rhizosphere	MPVDPRPAMPIVPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAV
Ga0208126_10070311	3300026843	Soil	MPVDPRPAMPIVPPRQAAFRTRRTWLLAKLATCVTVLTAATAVLIVAAAAVAFTMT
Ga0209813_104662461	3300027866	Populus Endosphere	MPVASRPAMPIVPPRQAAFRTRRTWLLAKLATSVTVLTAATAVVIVAAAAVAFTIT
Ga0209382_116074902	3300027909	Populus Rhizosphere	MSVGSRPAMPTMPARQPAFRARRDRLVTSLATFVTVLTAAVAVLIVAAAAVAFTIT
Ga0209382_122285851	3300027909	Populus Rhizosphere	MSVGSRPAMPRQPAFRARRDRLVTSLATFVTVLTAAVAVLVVAAAAVAFTIT
Ga0247822_110692983	3300028592	Soil	MPVDPRPAMPIVPPRQAAFRARRNWLVTQLATCVTVLAAAAAVLIVAAAAV
Ga0247819_106975052	3300028608	Soil	MPVDPRPAMPIIPPRQAAFRTRRTWLLAKLATSVTVLTAATAVVIVAAAA
Ga0307295_100088754	3300028708	Soil	MPVDPRPAMPTIPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVDPA
Ga0307285_100063603	3300028712	Soil	MPVDPRPAMPIVPPRQVAFRTRLTWLLAKLATCVTVLTAATAVLIVAAAAVAFTMT
Ga0307303_101216412	3300028713	Soil	MPIIPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT
Ga0307298_100369613	3300028717	Soil	MSVGLRSAIPTMPARRDQLVTRLATCITVLTAAIAVLIVAAAAVAFTIT
Ga0307307_101322112	3300028718	Soil	MPIVPPRQVAFRSRRTWLLAKLATCVTALTAATAVLIVAAAAVAFTMT
Ga0307280_101567111	3300028768	Soil	RTRRTWLLAKLATCVTVLTAATAVLIVAAAAVAFTMT
Ga0307288_103799262	3300028778	Soil	MSVGVRSAIPTMPARQPAFRARRDQLVTRLATCITVLTAAIAVLIVAAAAVAFTIT
Ga0307306_101309242	3300028782	Soil	MSVGLRSAMPTMPARQPAFRARRDQLVTRLATCITVLTAAIAVLIVAVTAV
Ga0307287_103130571	3300028796	Soil	PAMPTIPPRQAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT
Ga0307284_103473171	3300028799	Soil	MLVGLRSAIPTMPARQPAFRARRDQLVTRLATCITVLTAAIAVLIVAAAAVAFTIT
Ga0307503_105289091	3300028802	Soil	SAIPTMPARQPAFRVRRDQLVTRLATCITVLTAAIAVLIVAVTAVAFTIT
Ga0307302_100833821	3300028814	Soil	HPMSVGLRSAIPTMPARQPAFRARRDQLVTRLATCITVLTAAIAVLIVAAAAVAFTIT
Ga0307296_101273701	3300028819	Soil	RQAAFRTRRAWLLAKLATSVTVLTAATAVVIVAAAAVAFTIT
Ga0307312_111225231	3300028828	Soil	LRTPLMPALPARRRAFRALRDWLERGLATCVTVLAATVAVLIVAAAAVTFTIT
Ga0307289_101931021	3300028875	Soil	MPVDPRPAMPIVPPRQVAFRTRRTWLLAKLATCVTVLTAATAVLIVAAAAVAFTM
Ga0307304_100133543	3300028885	Soil	VVIDWLLLAKLATCVTALTAATAVLIVAAAAVAFTMT
Ga0307304_104437432	3300028885	Soil	MPVDPRPAMPIIPPRQAAFRTRRTGLLAKLATSVTVLTAATAVLIVAAAAVAFTIT
Ga0138296_16340851	3300030923	Soil	MPVDPRPAMPIVPPKQVAFRTRRTWLLAKLATCVTVLTAATAVLIVAAAAVAFTMT
Ga0308187_104134142	3300031114	Soil	MPVDPRPAMPIVPPRQVAFRTRRTWLLAKLATCVTVLTAAAAVLIVAAAAVAFTMT
Ga0307495_101033212	3300031199	Soil	RPAMPIVPPRQVAFRTRRTWLLAKLATCVTVLTAATAVLIVAAAAVAFTMT
Ga0170824_1062079672	3300031231	Forest Soil	MPVDPRPAMPIVPPRQVAFRTRRTWLLAKLATCVTVLSAATAVLIVAAAAVAFTMT
Ga0307473_109308552	3300031820	Hardwood Forest Soil	MSSASRPAMPIVPPRQGAFRARRDWLLRRVATWISVFTAAFAVLIVAAAAVAFAIT
Ga0310900_107445742	3300031908	Soil	MPVDPRPAMPIIPPRQAAFRTRRTWLLAKLATSVTVLTAATAVVIVAAAAVAFTIT
Ga0310906_106928881	3300032013	Soil	QAAFRTRRTWLLAKLATSVTVLTAATAVLIVAAAAVAFTIT
Ga0307470_113001172	3300032174	Hardwood Forest Soil	MPTMPARQPAFRARRDRLVTSLATFVTVLTAAVAVLIVAAAAVAFTIT
Ga0307471_1042708402	3300032180	Hardwood Forest Soil	AMPALPARRGAFRARRDWLVSGLATCVTVLAATVAILIVAAAAVTFTIT
Ga0307472_1002368112	3300032205	Hardwood Forest Soil	MSVGSRSAMPTMPAQQPAFRARRDQLVTRLATCITVLTAAIAVLIVAAAAVAFAIT
Ga0370545_091210_503_649	3300034643	Soil	MPIIPPRQAAFRTRRTGLLAKLATSVTVLTAATAVLIVAAAAVAFTIT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F052030

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences