NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F050969

Metagenome / Metatranscriptome Family F050969

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F050969
Family Type Metagenome / Metatranscriptome
Number of Sequences 144
Average Sequence Length 41 residues
Representative Sequence VGLRDVLFGKKKLAGPARERLFALTTAAVTLDTELGLR
Number of Associated Samples 132
Number of Associated Scaffolds 144

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 46.53 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 97.92 %
Associated GOLD sequencing projects 130
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (61.806 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(18.056 % of family members)
Environment Ontology (ENVO) Unclassified
(29.167 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(43.056 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 39.39%    β-sheet: 0.00%    Coil/Unstructured: 60.61%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.43
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 144 Family Scaffolds
PF01435Peptidase_M48 68.75
PF04012PspA_IM30 15.28
PF13442Cytochrome_CBB3 1.39
PF01939NucS 1.39
PF00753Lactamase_B 1.39
PF07883Cupin_2 0.69
PF13231PMT_2 0.69
PF00370FGGY_N 0.69
PF08327AHSA1 0.69
PF00691OmpA 0.69
PF02775TPP_enzyme_C 0.69
PF02403Seryl_tRNA_N 0.69

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 144 Family Scaffolds
COG1842Phage shock protein ATranscription [K] 30.56
COG1637Endonuclease NucS, RecB familyReplication, recombination and repair [L] 1.39
COG0172Seryl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.69

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms61.81 %
UnclassifiedrootN/A38.19 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2124908044|A5_c1_ConsensusfromContig60519All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1028Open in IMG/M
2199352025|deepsgr__Contig_157235All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300000953|JGI11615J12901_11484359All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300001686|C688J18823_10700853All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria644Open in IMG/M
3300002245|JGIcombinedJ26739_101829263All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria508Open in IMG/M
3300004114|Ga0062593_100916805All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria888Open in IMG/M
3300004463|Ga0063356_101646486All Organisms → cellular organisms → Bacteria957Open in IMG/M
3300004479|Ga0062595_101638722All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria602Open in IMG/M
3300004479|Ga0062595_102449550All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales519Open in IMG/M
3300005332|Ga0066388_101716947All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1112Open in IMG/M
3300005437|Ga0070710_10203695All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1251Open in IMG/M
3300005529|Ga0070741_11452241All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium567Open in IMG/M
3300005534|Ga0070735_10665745All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli616Open in IMG/M
3300005538|Ga0070731_10285237All Organisms → cellular organisms → Bacteria1096Open in IMG/M
3300005547|Ga0070693_101059400Not Available616Open in IMG/M
3300005556|Ga0066707_10125885All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1602Open in IMG/M
3300005559|Ga0066700_10706915All Organisms → cellular organisms → Bacteria691Open in IMG/M
3300005560|Ga0066670_10516466Not Available733Open in IMG/M
3300005566|Ga0066693_10017860All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2109Open in IMG/M
3300005568|Ga0066703_10458427All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia763Open in IMG/M
3300005587|Ga0066654_10638704All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300006844|Ga0075428_101855341All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria627Open in IMG/M
3300006953|Ga0074063_14014870All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria832Open in IMG/M
3300007076|Ga0075435_101739379Not Available547Open in IMG/M
3300009012|Ga0066710_102994668All Organisms → cellular organisms → Bacteria658Open in IMG/M
3300009012|Ga0066710_103051915All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium650Open in IMG/M
3300009792|Ga0126374_11345436Not Available579Open in IMG/M
3300009837|Ga0105058_1019776All Organisms → cellular organisms → Bacteria1405Open in IMG/M
3300010043|Ga0126380_10073516All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1950Open in IMG/M
3300010333|Ga0134080_10299280Not Available721Open in IMG/M
3300010362|Ga0126377_12568587Not Available585Open in IMG/M
3300010375|Ga0105239_12410854All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium613Open in IMG/M
3300010396|Ga0134126_11478519Not Available749Open in IMG/M
3300010399|Ga0134127_12564154Not Available590Open in IMG/M
3300011269|Ga0137392_10632056All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei888Open in IMG/M
3300012198|Ga0137364_10917778Not Available663Open in IMG/M
3300012199|Ga0137383_10747713All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria714Open in IMG/M
3300012205|Ga0137362_10480441Not Available1075Open in IMG/M
3300012208|Ga0137376_10377230All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1231Open in IMG/M
3300012208|Ga0137376_11002264All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria715Open in IMG/M
3300012210|Ga0137378_10773631All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria872Open in IMG/M
3300012212|Ga0150985_114829067Not Available593Open in IMG/M
3300012353|Ga0137367_10118437All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1945Open in IMG/M
3300012386|Ga0134046_1043243Not Available516Open in IMG/M
3300012395|Ga0134044_1116532All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1055Open in IMG/M
3300012497|Ga0157319_1038053Not Available551Open in IMG/M
3300012582|Ga0137358_10463230All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales855Open in IMG/M
3300012917|Ga0137395_10209033All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1361Open in IMG/M
3300012924|Ga0137413_11805217Not Available505Open in IMG/M
3300012927|Ga0137416_11817249Not Available557Open in IMG/M
3300012944|Ga0137410_11395597Not Available608Open in IMG/M
3300012948|Ga0126375_11920506Not Available520Open in IMG/M
3300012958|Ga0164299_11436160Not Available535Open in IMG/M
3300012961|Ga0164302_10173095All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1298Open in IMG/M
3300012961|Ga0164302_10302078All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1046Open in IMG/M
3300012975|Ga0134110_10583768All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300012976|Ga0134076_10242325Not Available767Open in IMG/M
3300012976|Ga0134076_10481680Not Available564Open in IMG/M
3300012986|Ga0164304_11589423All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria544Open in IMG/M
3300013307|Ga0157372_11554460All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium762Open in IMG/M
3300013308|Ga0157375_10416655Not Available1509Open in IMG/M
3300013308|Ga0157375_10490148Not Available1394Open in IMG/M
3300013501|Ga0120154_1138849All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia550Open in IMG/M
3300014168|Ga0181534_10387372All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia771Open in IMG/M
3300014654|Ga0181525_10746864All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium550Open in IMG/M
3300014827|Ga0120171_1114182Not Available662Open in IMG/M
3300015371|Ga0132258_10313352All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium3864Open in IMG/M
3300015371|Ga0132258_12800152All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium1215Open in IMG/M
3300015372|Ga0132256_102639842All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei602Open in IMG/M
3300017936|Ga0187821_10493184All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium511Open in IMG/M
3300017944|Ga0187786_10330013Not Available637Open in IMG/M
3300017966|Ga0187776_10565664Not Available787Open in IMG/M
3300017966|Ga0187776_11385358Not Available535Open in IMG/M
3300018064|Ga0187773_11186458Not Available512Open in IMG/M
3300018076|Ga0184609_10444538All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria597Open in IMG/M
3300018433|Ga0066667_10581018Not Available932Open in IMG/M
3300018468|Ga0066662_11456729Not Available711Open in IMG/M
3300018468|Ga0066662_12376891All Organisms → cellular organisms → Bacteria557Open in IMG/M
3300019279|Ga0184642_1668600Not Available1235Open in IMG/M
3300019868|Ga0193720_1046415All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria615Open in IMG/M
3300020012|Ga0193732_1046463All Organisms → cellular organisms → Bacteria743Open in IMG/M
3300020016|Ga0193696_1090052Not Available792Open in IMG/M
3300020022|Ga0193733_1125256Not Available708Open in IMG/M
3300020022|Ga0193733_1184899All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria544Open in IMG/M
3300020070|Ga0206356_10751975Not Available1353Open in IMG/M
3300020080|Ga0206350_10239590Not Available722Open in IMG/M
3300020082|Ga0206353_11957235All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1964Open in IMG/M
3300021363|Ga0193699_10234883All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria763Open in IMG/M
3300021418|Ga0193695_1084164All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria689Open in IMG/M
3300022756|Ga0222622_10401886All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria965Open in IMG/M
3300025544|Ga0208078_1118051All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium529Open in IMG/M
3300025899|Ga0207642_10522614All Organisms → cellular organisms → Bacteria729Open in IMG/M
3300025910|Ga0207684_11581576Not Available531Open in IMG/M
3300025911|Ga0207654_10794862All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium683Open in IMG/M
3300025917|Ga0207660_10305497Not Available1267Open in IMG/M
3300025919|Ga0207657_11490340All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium506Open in IMG/M
3300025929|Ga0207664_10199376All Organisms → cellular organisms → Bacteria1727Open in IMG/M
3300025931|Ga0207644_10380022All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1152Open in IMG/M
3300025937|Ga0207669_11565732All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria562Open in IMG/M
3300025942|Ga0207689_11325369All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales604Open in IMG/M
3300025986|Ga0207658_10607724All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria983Open in IMG/M
3300026041|Ga0207639_12174206All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium516Open in IMG/M
3300026067|Ga0207678_11467783Not Available602Open in IMG/M
3300026300|Ga0209027_1037183All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1835Open in IMG/M
3300026308|Ga0209265_1178541Not Available560Open in IMG/M
3300026310|Ga0209239_1212923All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria683Open in IMG/M
3300026528|Ga0209378_1122127Not Available1115Open in IMG/M
3300026552|Ga0209577_10229684All Organisms → cellular organisms → Bacteria1409Open in IMG/M
3300026552|Ga0209577_10802143All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium526Open in IMG/M
3300028563|Ga0265319_1082102Not Available1023Open in IMG/M
3300028707|Ga0307291_1086646Not Available775Open in IMG/M
3300028718|Ga0307307_10192540All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium644Open in IMG/M
3300028782|Ga0307306_10229763Not Available538Open in IMG/M
3300028787|Ga0307323_10347782All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales531Open in IMG/M
3300028811|Ga0307292_10321422All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria650Open in IMG/M
3300028814|Ga0307302_10258475All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria853Open in IMG/M
3300028876|Ga0307286_10042295All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1530Open in IMG/M
3300028884|Ga0307308_10212323Not Available927Open in IMG/M
3300030336|Ga0247826_10541122All Organisms → cellular organisms → Bacteria886Open in IMG/M
3300030904|Ga0308198_1033838Not Available741Open in IMG/M
3300030989|Ga0308196_1074436Not Available506Open in IMG/M
3300031058|Ga0308189_10418629All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria558Open in IMG/M
3300031099|Ga0308181_1068106Not Available713Open in IMG/M
3300031226|Ga0307497_10307304All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium729Open in IMG/M
3300031239|Ga0265328_10079770All Organisms → cellular organisms → Bacteria1206Open in IMG/M
3300031240|Ga0265320_10300729Not Available709Open in IMG/M
3300031344|Ga0265316_10169009All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1632Open in IMG/M
3300031421|Ga0308194_10123466All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria772Open in IMG/M
3300031421|Ga0308194_10315704All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium546Open in IMG/M
3300031712|Ga0265342_10560554Not Available579Open in IMG/M
3300031753|Ga0307477_10980384Not Available555Open in IMG/M
3300031938|Ga0308175_100777634All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1045Open in IMG/M
3300031943|Ga0310885_10173586Not Available1048Open in IMG/M
3300032008|Ga0318562_10641182Not Available613Open in IMG/M
3300032068|Ga0318553_10082232All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1624Open in IMG/M
3300032090|Ga0318518_10426977Not Available679Open in IMG/M
3300032205|Ga0307472_102609267All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria515Open in IMG/M
3300032261|Ga0306920_100479176All Organisms → cellular organisms → Bacteria1848Open in IMG/M
3300032782|Ga0335082_10102944All Organisms → cellular organisms → Bacteria2828Open in IMG/M
3300032828|Ga0335080_10994913Not Available854Open in IMG/M
3300032829|Ga0335070_10241154All Organisms → cellular organisms → Bacteria1777Open in IMG/M
3300033808|Ga0314867_097541All Organisms → cellular organisms → Bacteria683Open in IMG/M
3300034268|Ga0372943_0286101Not Available1043Open in IMG/M
3300034384|Ga0372946_0400836Not Available666Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil18.06%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil9.03%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil7.64%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil4.86%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil4.17%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.47%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere3.47%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.78%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.78%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.08%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere2.08%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.08%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.08%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.08%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.08%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.39%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.39%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.39%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost1.39%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.39%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.39%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.39%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.39%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.39%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.39%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.39%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.39%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.69%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.69%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.69%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.69%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.69%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Soil0.69%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.69%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland0.69%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.69%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.69%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.69%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.69%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.69%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand0.69%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.69%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.69%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.69%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.69%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.69%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.69%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.69%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2124908044Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5EnvironmentalOpen in IMG/M
2199352025Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOILEnvironmentalOpen in IMG/M
3300000953Soil microbial communities from Great Prairies - Kansas Corn soilEnvironmentalOpen in IMG/M
3300001686Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005566Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005587Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006953Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300009837Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012386Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012395Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012497Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510Host-AssociatedOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012975Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015EnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300013501Permafrost microbial communities from Nunavut, Canada - A35_65cm_0.25MEnvironmentalOpen in IMG/M
3300014168Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaGEnvironmentalOpen in IMG/M
3300014654Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaGEnvironmentalOpen in IMG/M
3300014827Permafrost microbial communities from Nunavut, Canada - A3_80cm_18MEnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300017936Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1EnvironmentalOpen in IMG/M
3300017944Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MGEnvironmentalOpen in IMG/M
3300017966Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MGEnvironmentalOpen in IMG/M
3300018064Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018076Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coexEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019279Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019868Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s1EnvironmentalOpen in IMG/M
3300020012Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1EnvironmentalOpen in IMG/M
3300020016Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1EnvironmentalOpen in IMG/M
3300020022Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2EnvironmentalOpen in IMG/M
3300020070Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020080Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020082Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300021363Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2EnvironmentalOpen in IMG/M
3300021418Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2EnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025544Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026067Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026300Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026308Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026528Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300028563Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaGHost-AssociatedOpen in IMG/M
3300028707Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148EnvironmentalOpen in IMG/M
3300028718Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194EnvironmentalOpen in IMG/M
3300028782Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193EnvironmentalOpen in IMG/M
3300028787Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381EnvironmentalOpen in IMG/M
3300028811Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149EnvironmentalOpen in IMG/M
3300028814Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183EnvironmentalOpen in IMG/M
3300028876Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140EnvironmentalOpen in IMG/M
3300028884Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195EnvironmentalOpen in IMG/M
3300030336Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1EnvironmentalOpen in IMG/M
3300030904Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030989Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031058Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031099Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031226Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_SEnvironmentalOpen in IMG/M
3300031239Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaGHost-AssociatedOpen in IMG/M
3300031240Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaGHost-AssociatedOpen in IMG/M
3300031344Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaGHost-AssociatedOpen in IMG/M
3300031421Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031712Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaGHost-AssociatedOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300032008Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032090Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300033808Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_20EnvironmentalOpen in IMG/M
3300034268Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2EnvironmentalOpen in IMG/M
3300034384Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
A5_c1_008789102124908044SoilVGLSNVLFGRKKLKEPARDRLFALTTAAVTLDVGCGL
deepsgr_025989702199352025SoilLTRFGDILFGRKKLQGPAAEKLFALSTAAVTLDTACSLKTAGVGALIFKPLS
JGI11615J12901_1148435913300000953SoilVGLADILLGRKKLKGPAQDRLFALSTARVTLDTELGLQT
C688J18823_1070085313300001686SoilLGLRDVLFGRKSLAGPAGERLFALTTAAVTLQTELGLRTAG
JGIcombinedJ26739_10182926313300002245Forest SoilVGLRDVLFGKKKLAGPARERLFALTTAAVTLDTELGLRTAGAGGVVFKPLSA
Ga0062593_10091680513300004114SoilLGLRNVLFGRKSLAGPARERLFALTTAAVTLQTELGLRTAGAG
Ga0063356_10164648623300004463Arabidopsis Thaliana RhizosphereVGLRDVLLGKKKLSAPARDRLFALTTAAVTLDTELGLRTAGVGGV
Ga0062595_10163872213300004479SoilVGLRDVLLGKKKLSAPARDRLFALTTAAVTLDTELGLRTA
Ga0062595_10244955013300004479SoilMGLRDALFGRKKLSEPRDDRLFALTTAAVTLEVELGLKTA
Ga0066388_10171694723300005332Tropical Forest SoilVGLTDILFGRKKLKEASRERLFALTTAAVTLDVELGLKTAGAGALVV
Ga0070710_1020369513300005437Corn, Switchgrass And Miscanthus RhizosphereLVLGLRDVLLGKKKLAGPARERLFALTTAAVTLDTELGLRTA
Ga0070741_1145224123300005529Surface SoilVGLRDVLLGRKKLAEPKEDKLFALTTAAVTLDTELQLKTAGIA
Ga0070735_1066574523300005534Surface SoilLGLGDVLFGRKKLKAPASERQFALCTSAVTLDTECSLEPAGV
Ga0070731_1028523723300005538Surface SoilMRIGDVLFGRKKLKEPTGERLFALTTAAVTLDTACGLKPAGK
Ga0070693_10105940023300005547Corn, Switchgrass And Miscanthus RhizosphereMGLRDVLFGRKKLSEPKEDKLFALATATVTLDTELNLKSAGV
Ga0066707_1012588513300005556SoilMGLADVLLGRKKLKSPAQDRLFALSTARVTLDTELGL
Ga0066700_1070691513300005559SoilMGLKDVLFGKKKLAGPARERLFALTTAAVTLDTELGLRTA
Ga0066670_1051646613300005560SoilMGLRDVLFGKKKLAGPAQERLFSLTTAAVTLDTELGLRSAGVGGVVFKPLSAGEF
Ga0066693_1001786033300005566SoilLGLRDVLLGRKKLAGPARERLFALTTAAVTLDTEL
Ga0066703_1045842723300005568SoilLGLRDVLFGRKQLKPPAEERLFALTTAAVTLETEV
Ga0066654_1063870423300005587SoilVGLADVLLGRKKLKGAAGDRLFALSTAAVTLDTELGLR
Ga0075428_10185534123300006844Populus RhizosphereVGLRDVLFGKKKLAAPARERLFALTTAAVTLDTELGLRTAGVGGVVFKPL
Ga0074063_1401487013300006953SoilLGLRDVLLGKKKLAAPARERLFALTTAAVTLDTELGLR
Ga0075435_10173937923300007076Populus RhizosphereMGLRDVLFGRKKLSEPKEDKLFALATATVTLDTELNLKSAGVAAV
Ga0066710_10299466813300009012Grasslands SoilMSLRDVLFGRKKLAEPAAERLFALTTAAVTLETELNLRTAGAGA
Ga0066710_10305191513300009012Grasslands SoilVGLRDVLLGKKKLAGPARERLFALTTAAVTLDTELG
Ga0126374_1134543613300009792Tropical Forest SoilLGLRDVLFGKKKLAEPREDRLFALTTAAVTMETEL
Ga0105058_101977613300009837Groundwater SandMGLRDVLFGKKKLAGPARDRLFALTTAAVTMETEL
Ga0126380_1007351613300010043Tropical Forest SoilVGLSNVLFGRKKLKDSAQERLFALSTARVTLDAELGLKSAGSGGIVFKPLSAG
Ga0134080_1029928013300010333Grasslands SoilLGLRDVLFGKKKLSSPAGERLFALTTAAVTLDTELGLRAAGVGGVVFKPLSAGEFVR
Ga0126377_1256858713300010362Tropical Forest SoilVGIRDVLFGRKKLSDPAADDRLFALTTATVTLETELALKPAGV
Ga0105239_1241085433300010375Corn RhizosphereVGLRDILSGRKKLPGPKDDRLFALTTAAVTLQVDLGLKCAGAAAIT
Ga0134126_1147851913300010396Terrestrial SoilVGLADILLGRKKLKAPAQDRVFALSTARVTLDTELGLKTAGS
Ga0134127_1256415413300010399Terrestrial SoilVGFRDVLFGRKQLKAPAEERLFALTTAAITLETDV
Ga0137392_1063205623300011269Vadose Zone SoilVGLGNVLFGRKKLKGPARDRLFALTTAAVSLDVSCGLKPAGVGA
Ga0137364_1091777823300012198Vadose Zone SoilVGLRDILSGRAKLKEPAGERLFALTTAAVTLDVECGLKPSGAG
Ga0137383_1074771313300012199Vadose Zone SoilVGLRDVLFGKKKLAAPARERLFALTTAAVTLDTELGLRSAGDAGI
Ga0137362_1048044113300012205Vadose Zone SoilLGLRDVLFGRKKLAEPQDDRLFSLTTAAVTMETELGL
Ga0137376_1037723013300012208Vadose Zone SoilVGLRDVLLGKKKLSGPARERLFALTTAAVTLDTELGLRTAGAA
Ga0137376_1100226423300012208Vadose Zone SoilVGLRDVLFGKKKLAGPARERLFALTTAAVTLDTELGLRTAGDAGI
Ga0137378_1077363123300012210Vadose Zone SoilMGLRDVLLGKKKLAGPARERLFALTTAAVTLDTELGLRTAGAGG
Ga0150985_11482906713300012212Avena Fatua RhizosphereLGLRDVLLGKKKLAGPARERLFALTTAAVTLDTELGLRTAGAGGIC
Ga0137367_1011843743300012353Vadose Zone SoilVPFTDILFGRKKLKEPARDRLFALTTAAVTLNVECGLTPAGIGAVVLKPLS
Ga0134046_104324313300012386Grasslands SoilLGLRDVLFGRKKLADPARERLFALTTAAVTLQTEL
Ga0134044_111653213300012395Grasslands SoilVGLADILLGRKKLKGPAQDRLFALSTARVTLDTELGLQTAGSG
Ga0157319_103805313300012497Arabidopsis RhizosphereLGLRDVLFGRKKLAEPREDRLFGLTTAAVTLETEL
Ga0137358_1046323013300012582Vadose Zone SoilLGLGNVLFGRKKLKEPAGDRIFALTTAAVTLDVECGVKPAGAGAVI
Ga0137395_1020903333300012917Vadose Zone SoilVGLGNVLFGRKKLKEPAGDRIFALTTAAVTLDVECGVKPAG
Ga0137413_1180521723300012924Vadose Zone SoilVGLGDVLFGRKKLKEPAADRLFAITTAAVTLDVDCSLKPAGVG
Ga0137416_1181724923300012927Vadose Zone SoilLGLRDVLFGRKKLAEPKDDRLFSLPTAAITLQTELGLKSA
Ga0137410_1139559713300012944Vadose Zone SoilVGLGNVLFGRKKLKEPARDRLFALTTAAVTLDVDCGSKPAGV
Ga0126375_1192050613300012948Tropical Forest SoilVGLRDVLLGKKKLSAPSRERLFALTTAAVTLDTELG
Ga0164299_1143616023300012958SoilMFGRKKLAEPKEDQLFGLTTAAVTLETELGLKPAGVAA
Ga0164302_1017309513300012961SoilVGLRDALFGKQKLAGPARERLFALSTAAVTLDTELGLRPAGA
Ga0164302_1030207823300012961SoilLGLRDALFGKKKLSEPKDDRLFALTTAAVTLDVELGLKTAGVAALAFKP
Ga0134110_1058376823300012975Grasslands SoilLGLRDVLFGKKKLAGPARERLFALTTAAVTLDTELGLRTAGDAG
Ga0134076_1024232513300012976Grasslands SoilVGLRDVLFGKKKLSAPSAERLFALTTAAVTLDTELGLKTSGAGA
Ga0134076_1048168023300012976Grasslands SoilLGLRDVLFGRKQLAAPADERLFALSTARVTLDTELGLKSGGAAA
Ga0164304_1158942313300012986SoilVGLRDVLLGKKKLAGPARERLFALTTAAVTLDAELGLRSA
Ga0157372_1155446013300013307Corn RhizosphereVGLRDILSGRKKLPGPKDDRLFALTTAAVTLQVELG
Ga0157375_1041665513300013308Miscanthus RhizosphereLGLRDALFGKKKLSEPKDDRLFALTTAAVTLDVELGLKTAGVAALAFKPQ
Ga0157375_1049014813300013308Miscanthus RhizosphereVGLRDALFGKQKLAGPARERLFALSTAAVTLDTELGLRS
Ga0120154_113884913300013501PermafrostMGLRDILSGRAKLKEPAGDRLFALTTAAVSLDVECGLKPAGAG
Ga0181534_1038737223300014168BogMGLRDIAFGRKKLPGPRDDRLFALATAAVTLETELGLTT
Ga0181525_1074686413300014654BogMGLRDIAFGRKKLPGPRDDRLFALSTASVTLETEL
Ga0120171_111418223300014827PermafrostVGLSNVLFGRKKLKEPARDRLFALTTAAVTLDIGCGLKPAGVGALVFK
Ga0132258_1031335243300015371Arabidopsis RhizosphereVGIRDVLFGRKKLSDPAADDRLFALTTATVTLETELALKPAGVAAL
Ga0132258_1280015213300015371Arabidopsis RhizosphereVGIRDVLFGRKKLSDPAADDRLFALTTATVTLETELALKPAGVA
Ga0132256_10263984223300015372Arabidopsis RhizosphereVGLGDVLFGRKKLKGPAGDRLFALTTAAVSLDLQCGLKPA
Ga0187821_1049318423300017936Freshwater SedimentMFGRKKLAEPKEDKVFALTTAAVTLQTELGLKTAGVAAV
Ga0187786_1033001313300017944Tropical PeatlandVGLGDVLFGRKKLKEPAGDRLFALTTAAVTLDTGCG
Ga0187776_1056566423300017966Tropical PeatlandLGLNDILFGRKKLRAPAGERLFALTTAAVTLDTECSLKAAGVG
Ga0187776_1138535823300017966Tropical PeatlandLGLRDALFGKKKLSEPRDDRLFALTTAAVTLDTELNLTTAGKAAVTF
Ga0187773_1118645823300018064Tropical PeatlandMGLRDALFGKKKLSEPRDDRLFALTTAAITLDTELGLKTAGK
Ga0184609_1044453813300018076Groundwater SedimentLGLRNVLFGKKKLAAPARDRLFALATAAVTLETELGLRTAGAGAIV
Ga0066667_1058101813300018433Grasslands SoilVGLRDILSGRAKLKEPAGERLFALTTAAVTLDVECGLKP
Ga0066662_1145672913300018468Grasslands SoilVGLRDVLSGRKKLPAPARERLFALTTAAVTLDTELGL
Ga0066662_1237689123300018468Grasslands SoilMGLRDILSGRKKLPPPAAERLFALTTAAITLQTDCNLKTAGVG
Ga0184642_166860023300019279Groundwater SedimentLGLRNVLFGRKKLAAPARDRLFALATAAVTLDTELG
Ga0193720_104641533300019868SoilVGLRDVLFGKKKLAGPARERLFALTTAAVTLDTEL
Ga0193732_104646313300020012SoilVGLRDVLFGKKKLAGPARERLFALTTAAVTLDTELGLRSAGAAGVVF
Ga0193696_109005213300020016SoilVGLRDALFGKQKLAGPARERLFALSTAAVTLDTELGLRPAG
Ga0193733_112525623300020022SoilVGLRDVLLGKKKLAGPARERLFALTTAAVTLDTEL
Ga0193733_118489913300020022SoilVGLRDALFGKQKLAGPARERLFALSTAAVTLDTELGLRSAGAGG
Ga0206356_1075197513300020070Corn, Switchgrass And Miscanthus RhizosphereLGLRDVLLGKKKLGEPREDRLFALTTAAVTLQIELG
Ga0206350_1023959013300020080Corn, Switchgrass And Miscanthus RhizosphereVGLRDILPGRKKRPGPKDDRLFALTTASVTLDTELGLKT
Ga0206353_1195723513300020082Corn, Switchgrass And Miscanthus RhizosphereLGLTDVLFGRKKLKGPARDRLFALTTAAVTLDVECGLKPAGA
Ga0193699_1023488323300021363SoilVGLRDVLLGKKKLAGPARERLFALTTAAVTLDTELGLR
Ga0193695_108416413300021418SoilVGLRDVLLGTKKLAGPARERLFALTTAAVTLDTELGLRSAGAG
Ga0222622_1040188613300022756Groundwater SedimentVGLRDVLLGKKKLSGPARDRLFALTTAAVTLDTELGLRTA
Ga0208078_111805123300025544Arctic Peat SoilVALRDVLFGRKKLSEPSDDRLFALTTAAVTLQAELGLIT
Ga0207642_1052261423300025899Miscanthus RhizosphereVGLADILLGRKKLKGPAQDRLFALSTARVTLDTELGLETAGSG
Ga0207684_1158157613300025910Corn, Switchgrass And Miscanthus RhizosphereMGLTNVLFGRKKLKEPADDRLFALTTAAVTLQTDCNLK
Ga0207654_1079486213300025911Corn RhizosphereVGLGDVLFGRKKLKGPARDRLFALTTAAVSLDVECGLKPAGV
Ga0207660_1030549733300025917Corn RhizosphereVGLRDILSGRKKLPGPKDDRLFALTTAAVTLQVELGLKCAGAAAITFK
Ga0207657_1149034013300025919Corn RhizosphereVGLRDILSGRKKLPGPKDDRLFALTTAAVPLQVELGLTCAGAA
Ga0207664_1019937613300025929Agricultural SoilLKFGDVLFGRKKLKEPAGERLFALTTAAVTLDTSCGLRPAGKGAVIFKP
Ga0207644_1038002213300025931Switchgrass RhizosphereLGLRDVLLGKKKLAAPARERLFALTTAAVTLDTELGLRTAGAAGIVFK
Ga0207669_1156573213300025937Miscanthus RhizosphereVGLRDVLLGKKKLAGPARDRLFALTTAAVTLDVELGLRP
Ga0207689_1132536913300025942Miscanthus RhizosphereMGFRDVLFGRKKLAEPRDDRLFALTTAQVTLDDELKLRP
Ga0207658_1060772413300025986Switchgrass RhizosphereVGLRDALFGKQKLAGPARERLFALSTAAVTLDTELGLRSAG
Ga0207639_1217420623300026041Corn RhizosphereLGLTDVLFGRKKLKGPARDRLFALTTAAVTLNVECGLKP
Ga0207678_1146778323300026067Corn RhizosphereMGLRDVLFGRKKLPGPKEDRLFALSTAAVTLQTECG
Ga0209027_103718343300026300Grasslands SoilMGLTDILFGRKKLKEPAGERLFALTTAAVTLDVQCGLKTAG
Ga0209265_117854123300026308SoilVGLADVLLGRKKLKGAAGDRLFALSTAAVTLDTELGLRTAG
Ga0209239_121292313300026310Grasslands SoilVGLRDVLFGKKKLAGPARERLFALTTAAVTLDTELGLRS
Ga0209378_112212723300026528SoilMGLADVLLGRKKLKSPAQDRLFALSTARVTLDTELGLKTAGA
Ga0209577_1022968413300026552SoilVGLKDVLFGRKQLKAPAEERLFALTTAAITLETDVGLKFAGAGAIVY
Ga0209577_1080214313300026552SoilVGLRDVLFGRKQLKAPAEERLFALTTAAITLETDVGLKFAGAGGIVY
Ga0265319_108210213300028563RhizosphereVGLTDILFGRKKLKEPAADRLFAITTAAVTLDVECGLKPA
Ga0307291_108664613300028707SoilLGLRNVLFGKKKLAAPARDRLFALATAAVTLDTELGLRTAGSGA
Ga0307307_1019254013300028718SoilVGLRDTLFGRKKLKEPAGDRLFALTTAAVTLNIECGLKPAGVGA
Ga0307306_1022976313300028782SoilVGLRDVLFGKKKLAGPARERLFALTTAAVTLDTELGLR
Ga0307323_1034778213300028787SoilVGLSDVLFGRKKLKGPARDRLFALTTAAVSLDMECGLKPAGVGA
Ga0307292_1032142213300028811SoilVGLRDVLFGKKKLAGPARERLFALTTAAVTLDTELGLRSAGAA
Ga0307302_1025847523300028814SoilLGLRNVLFGKKKLAAPARDRLFALATAAVTLDTELGLRTAGAGA
Ga0307286_1004229513300028876SoilVGLADILLGRKKLKGPAQDRLFALSTARVTLDTELGLQ
Ga0307308_1021232313300028884SoilLGLRNVLFGKKKLAAPARDRLFALATAAVTLETELGLR
Ga0247826_1054112223300030336SoilVGLADILLGRKKLKGPAQDRLFALSTARVTLDTELGLETAGSGG
Ga0308198_103383813300030904SoilVGLADILLGRKKLKGPAQDRLFALSTARVTLDTELGLQTA
Ga0308196_107443613300030989SoilVGLRDALFGKKKLAEPARERLFALTTAAVTLDTEL
Ga0308189_1041862923300031058SoilVGLRDVLLGKKKLAGPARERLFALTTAAVTLDTELGLRSAGAGGV
Ga0308181_106810613300031099SoilVGLRDALFGKQKLAGPARERLFALTTAAVTLDTEL
Ga0307497_1030730423300031226SoilVGLGDVLFGRRKLKEPARDRLFALTTAAVTLDVELGL
Ga0265328_1007977033300031239RhizosphereLGLGDILFGRKKLKTPAGERLFALTTAAVTLDTECSLKPAGV
Ga0265320_1030072923300031240RhizosphereVGLTDVLFGRKKLKEPAGDRLFALTTAAVTLDTGC
Ga0265316_1016900913300031344RhizosphereLGLGDVLFGRKKLKSPAGERLFALTTAAVTLDTECSLKPAG
Ga0308194_1012346613300031421SoilVGLRDVLLGKKKLAGPARERLFALTTAAVTLDTELGLRTGGAAGVVFKP
Ga0308194_1031570413300031421SoilVGLRDVLFGRKQLKAPAEERLFALTTAAITLEADVGLKFGGAGAIV
Ga0265342_1056055423300031712RhizosphereVGIGDVLFGRKKLKEPAADRLFALTTAAVTLDTECG
Ga0307477_1098038423300031753Hardwood Forest SoilLGLGDVLFGRKKLKAPASERLFALCTSAVTLDTECSLQTDGVGAVI
Ga0308175_10077763433300031938SoilVGLGDVLFGRKKLKGPAGDRLFALTTAAVSLDISC
Ga0310885_1017358623300031943SoilVGFLDVLFGRKRLPEARRDDLFALATAAVTLEVEL
Ga0318562_1064118223300032008SoilMGLRDVLFGRKKLAEPKADQLFALTTAAVTLDTELNLKTAGVAAVA
Ga0318553_1008223213300032068SoilMGLRDVLFGRKKLAEPKADQLFALTTAAVTLDTELNLK
Ga0318518_1042697723300032090SoilVGIRDVLFGRKKLAEPREDRLFGLTTAAVTLDTDLGLKTAGV
Ga0307472_10260926723300032205Hardwood Forest SoilVGLRDVLFGKKKLAGPARERLFALTTAAVTLDTGLGLR
Ga0306920_10047917633300032261SoilLGLRDALFGRKKLSEPRDDRLFALATAAGTLATELNRTTAGQAAGTFKPRT
Ga0335082_1010294413300032782SoilMGLRDALLGKKKLSEPREDRLFALTTAAVTLKVELGLTTAGVGAI
Ga0335080_1099491313300032828SoilVPLGDIFFGRKKLKEPADDRLFALTTAAVTLDVECGLKPAGVGA
Ga0335070_1024115413300032829SoilVPFTDVFFGRKKLKEPAGDRLFALTTAAVTLDVECGLKPA
Ga0314867_097541_1_1203300033808PeatlandVGLTDVLFGRKKLKEPAGDRLFALTTAAVTLDTGCGLKPA
Ga0372943_0286101_900_10433300034268SoilVGLRDILSGRKKLPGPKDDRLFALTTAAVTLDVELGLKTAGVGAITFK
Ga0372946_0400836_545_6643300034384SoilLGIRDALFGKKKLSEPKTDALFALATAAVTLDTELGLKTA

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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