Metagenome / Metatranscriptome Family F050595

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F050595
Family Type	Metagenome / Metatranscriptome
Number of Sequences	145
Average Sequence Length	59 residues
Representative Sequence	MTTRRTWMIAALILAVALVSGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTK
Number of Associated Samples	125
Number of Associated Scaffolds	145

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	95.17 %
% of genes near scaffold ends (potentially truncated)	99.31 %
% of genes from short scaffolds (< 2000 bps)	93.10 %
Associated GOLD sequencing projects	121
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.414 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (12.414 % of family members)
Environment Ontology (ENVO)	Unclassified (29.655 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (37.931 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 21.18% β-sheet: 0.00% Coil/Unstructured: 78.82%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 145 Family Scaffolds
PF02558	ApbA	19.31
PF13561	adh_short_C2	11.72
PF00773	RNB	7.59
PF08546	ApbA_C	4.83
PF04966	OprB	4.14
PF00106	adh_short	3.45
PF00107	ADH_zinc_N	3.45
PF01717	Meth_synt_2	3.45
PF03243	MerB	2.07
PF02515	CoA_transf_3	2.07
PF00300	His_Phos_1	2.07
PF00072	Response_reg	1.38
PF00296	Bac_luciferase	1.38
PF00441	Acyl-CoA_dh_1	1.38
PF00196	GerE	0.69
PF00496	SBP_bac_5	0.69
PF01177	Asp_Glu_race	0.69
PF00696	AA_kinase	0.69
PF06983	3-dmu-9_3-mt	0.69
PF01243	Putative_PNPOx	0.69
PF00528	BPD_transp_1	0.69
PF01654	Cyt_bd_oxida_I	0.69
PF13374	TPR_10	0.69
PF09347	DUF1989	0.69
PF02894	GFO_IDH_MocA_C	0.69
PF00723	Glyco_hydro_15	0.69
PF05685	Uma2	0.69

COG ID	Name	Functional Category	% Frequency in 145 Family Scaffolds
COG0557	Exoribonuclease R	Transcription [K]	7.59
COG4776	Exoribonuclease II	Transcription [K]	7.59
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	4.83
COG3659	Carbohydrate-selective porin OprB	Cell wall/membrane/envelope biogenesis [M]	4.14
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	3.45
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	2.07
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.38
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.38
COG0673	Predicted dehydrogenase	General function prediction only [R]	0.69
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	0.69
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	0.69
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.69
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	0.69
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.69

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.41 %
Unclassified	root	N/A	27.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.41 %
Unclassified	root	N/A	27.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.41 %
Unclassified	root	N/A	27.59 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	30.34 %
Unclassified	root	N/A	27.59 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.55 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.38 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	30.34 %
Unclassified	root	N/A	27.59 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.69 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.69 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.69 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	30.34 %
Unclassified	root	N/A	27.59 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.07 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.69 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.69 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.59 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	25.52 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.07 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.69 %
Halomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae	0.69 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.59 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	25.52 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.07 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.69 %
Halomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	0.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.59 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	25.52 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.07 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.69 %
unclassified Halomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → unclassified Halomonas	0.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.59 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	25.52 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.07 %
Halomonas sp. BC04	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → unclassified Halomonas → Halomonas sp. BC04	0.69 %
Streptomyces xanthii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces xanthii	0.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.69 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004020\|Ga0055440_10185184	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300004024\|Ga0055436_10063700	All Organisms → cellular organisms → Bacteria → Proteobacteria	1025	Open in IMG/M
3300004024\|Ga0055436_10099972	All Organisms → cellular organisms → Bacteria → Proteobacteria	848	Open in IMG/M
3300004114\|Ga0062593_101783059	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300004480\|Ga0062592_102410313	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	528	Open in IMG/M
3300004643\|Ga0062591_100370363	All Organisms → cellular organisms → Bacteria → Proteobacteria	1168	Open in IMG/M
3300004643\|Ga0062591_102943743	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	505	Open in IMG/M
3300005093\|Ga0062594_102629739	All Organisms → cellular organisms → Bacteria → Proteobacteria	556	Open in IMG/M
3300005176\|Ga0066679_10371086	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	936	Open in IMG/M
3300005181\|Ga0066678_10542317	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	772	Open in IMG/M
3300005187\|Ga0066675_10814061	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	706	Open in IMG/M
3300005204\|Ga0068997_10071637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	706	Open in IMG/M
3300005332\|Ga0066388_104172571	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	737	Open in IMG/M
3300005445\|Ga0070708_100050057	All Organisms → cellular organisms → Bacteria	3698	Open in IMG/M
3300005456\|Ga0070678_101204954	All Organisms → cellular organisms → Bacteria → Proteobacteria	702	Open in IMG/M
3300005468\|Ga0070707_100886238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	857	Open in IMG/M
3300005471\|Ga0070698_101441254	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	640	Open in IMG/M
3300005526\|Ga0073909_10466770	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300005536\|Ga0070697_100376313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1229	Open in IMG/M
3300005540\|Ga0066697_10477869	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	712	Open in IMG/M
3300005546\|Ga0070696_101197452	All Organisms → cellular organisms → Bacteria → Proteobacteria	642	Open in IMG/M
3300005549\|Ga0070704_100664798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	921	Open in IMG/M
3300005554\|Ga0066661_10853029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → unclassified Halomonas → Halomonas sp. BC04	533	Open in IMG/M
3300005559\|Ga0066700_10016065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4053	Open in IMG/M
3300005615\|Ga0070702_100004424	All Organisms → cellular organisms → Bacteria → Proteobacteria	6417	Open in IMG/M
3300005713\|Ga0066905_100135593	All Organisms → cellular organisms → Bacteria	1746	Open in IMG/M
3300005764\|Ga0066903_102116898	All Organisms → cellular organisms → Bacteria → Proteobacteria	1083	Open in IMG/M
3300005764\|Ga0066903_102255088	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300005764\|Ga0066903_106773506	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300005829\|Ga0074479_11026944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1147	Open in IMG/M
3300005834\|Ga0068851_10446528	All Organisms → cellular organisms → Bacteria → Proteobacteria	768	Open in IMG/M
3300006047\|Ga0075024_100279802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	811	Open in IMG/M
3300006173\|Ga0070716_101080477	All Organisms → cellular organisms → Bacteria → Proteobacteria	639	Open in IMG/M
3300006196\|Ga0075422_10281253	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	708	Open in IMG/M
3300006572\|Ga0074051_10674659	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	572	Open in IMG/M
3300006579\|Ga0074054_11781651	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300006606\|Ga0074062_12328650	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	632	Open in IMG/M
3300006844\|Ga0075428_102697132	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300006846\|Ga0075430_101173705	All Organisms → cellular organisms → Bacteria → Proteobacteria	632	Open in IMG/M
3300006847\|Ga0075431_101233341	All Organisms → cellular organisms → Bacteria → Proteobacteria	710	Open in IMG/M
3300006904\|Ga0075424_101294651	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300006904\|Ga0075424_102048444	All Organisms → cellular organisms → Bacteria → Proteobacteria	604	Open in IMG/M
3300006904\|Ga0075424_102858634	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300006954\|Ga0079219_10402723	All Organisms → cellular organisms → Bacteria → Proteobacteria	908	Open in IMG/M
3300006969\|Ga0075419_10773861	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300006969\|Ga0075419_11279159	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	544	Open in IMG/M
3300009012\|Ga0066710_104164649	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300009012\|Ga0066710_104847761	Not Available	503	Open in IMG/M
3300009089\|Ga0099828_11450983	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	606	Open in IMG/M
3300009090\|Ga0099827_10607639	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	943	Open in IMG/M
3300009090\|Ga0099827_11445236	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300009090\|Ga0099827_11979156	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	506	Open in IMG/M
3300009092\|Ga0105250_10558709	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300009100\|Ga0075418_10262102	All Organisms → cellular organisms → Bacteria	1841	Open in IMG/M
3300009137\|Ga0066709_101222046	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300009147\|Ga0114129_10713221	Not Available	1288	Open in IMG/M
3300009176\|Ga0105242_12585332	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	557	Open in IMG/M
3300010047\|Ga0126382_10881571	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300010047\|Ga0126382_11516685	Not Available	617	Open in IMG/M
3300010326\|Ga0134065_10115889	Not Available	905	Open in IMG/M
3300010335\|Ga0134063_10166532	All Organisms → cellular organisms → Bacteria → Proteobacteria	1028	Open in IMG/M
3300010359\|Ga0126376_10120679	All Organisms → cellular organisms → Bacteria	2044	Open in IMG/M
3300010360\|Ga0126372_10519972	Not Available	1123	Open in IMG/M
3300010360\|Ga0126372_11375399	Not Available	737	Open in IMG/M
3300010361\|Ga0126378_12388995	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	604	Open in IMG/M
3300010391\|Ga0136847_10799522	All Organisms → cellular organisms → Bacteria	2085	Open in IMG/M
3300010397\|Ga0134124_12812604	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	530	Open in IMG/M
3300010399\|Ga0134127_12889585	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	559	Open in IMG/M
3300010400\|Ga0134122_13267917	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	509	Open in IMG/M
3300012040\|Ga0137461_1085098	Not Available	893	Open in IMG/M
3300012189\|Ga0137388_11838835	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	537	Open in IMG/M
3300012203\|Ga0137399_11693349	Not Available	521	Open in IMG/M
3300012210\|Ga0137378_11455592	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	597	Open in IMG/M
3300012353\|Ga0137367_10048484	All Organisms → cellular organisms → Bacteria → Proteobacteria	3204	Open in IMG/M
3300012358\|Ga0137368_10736130	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	616	Open in IMG/M
3300012532\|Ga0137373_10155558	All Organisms → cellular organisms → Bacteria	1924	Open in IMG/M
3300012582\|Ga0137358_10405049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces xanthii	922	Open in IMG/M
3300012922\|Ga0137394_11019521	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	687	Open in IMG/M
3300012923\|Ga0137359_10614513	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	952	Open in IMG/M
3300012927\|Ga0137416_11490796	Not Available	614	Open in IMG/M
3300012930\|Ga0137407_10144996	All Organisms → cellular organisms → Bacteria	2092	Open in IMG/M
3300012971\|Ga0126369_11888908	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	686	Open in IMG/M
3300012977\|Ga0134087_10372102	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300013297\|Ga0157378_12418840	Not Available	577	Open in IMG/M
3300014318\|Ga0075351_1044046	Not Available	804	Open in IMG/M
3300014326\|Ga0157380_10469898	Not Available	1213	Open in IMG/M
3300015359\|Ga0134085_10098764	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300017792\|Ga0163161_10035703	All Organisms → cellular organisms → Bacteria	3558	Open in IMG/M
3300017939\|Ga0187775_10420481	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	557	Open in IMG/M
3300018053\|Ga0184626_10037143	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2017	Open in IMG/M
3300018064\|Ga0187773_10067950	All Organisms → cellular organisms → Bacteria	1685	Open in IMG/M
3300018074\|Ga0184640_10412257	Not Available	606	Open in IMG/M
3300018433\|Ga0066667_10256912	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1328	Open in IMG/M
3300019998\|Ga0193710_1003462	Not Available	1587	Open in IMG/M
3300020001\|Ga0193731_1158438	Not Available	551	Open in IMG/M
3300020150\|Ga0187768_1075927	Not Available	757	Open in IMG/M
3300021560\|Ga0126371_10360990	All Organisms → cellular organisms → Bacteria	1589	Open in IMG/M
3300025885\|Ga0207653_10147835	Not Available	863	Open in IMG/M
3300025898\|Ga0207692_10491461	Not Available	778	Open in IMG/M
3300025910\|Ga0207684_10058715	All Organisms → cellular organisms → Bacteria	3265	Open in IMG/M
3300025916\|Ga0207663_10102765	Not Available	1923	Open in IMG/M
3300025933\|Ga0207706_11453383	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	561	Open in IMG/M
3300025939\|Ga0207665_11413507	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	554	Open in IMG/M
3300025940\|Ga0207691_10645325	Not Available	895	Open in IMG/M
3300025941\|Ga0207711_10741232	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	916	Open in IMG/M
3300026075\|Ga0207708_11718561	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	551	Open in IMG/M
3300026118\|Ga0207675_100215436	Not Available	1849	Open in IMG/M
3300026142\|Ga0207698_12391806	Not Available	539	Open in IMG/M
3300026318\|Ga0209471_1075199	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1501	Open in IMG/M
3300026326\|Ga0209801_1116955	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1144	Open in IMG/M
3300026354\|Ga0257180_1063616	Not Available	533	Open in IMG/M
3300026359\|Ga0257163_1050497	Not Available	663	Open in IMG/M
3300026360\|Ga0257173_1017800	Not Available	871	Open in IMG/M
3300027765\|Ga0209073_10231581	Not Available	712	Open in IMG/M
3300027787\|Ga0209074_10016726	Not Available	1922	Open in IMG/M
3300027874\|Ga0209465_10108633	Not Available	1363	Open in IMG/M
3300027874\|Ga0209465_10479554	Not Available	621	Open in IMG/M
3300027882\|Ga0209590_10623277	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	693	Open in IMG/M
3300027882\|Ga0209590_10700063	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	648	Open in IMG/M
3300027882\|Ga0209590_10840425	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	581	Open in IMG/M
3300028673\|Ga0257175_1108686	Not Available	547	Open in IMG/M
3300028792\|Ga0307504_10024249	Not Available	1543	Open in IMG/M
3300031474\|Ga0170818_101029343	Not Available	536	Open in IMG/M
3300031538\|Ga0310888_11005394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	524	Open in IMG/M
3300031720\|Ga0307469_11067250	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300031731\|Ga0307405_10742144	Not Available	817	Open in IMG/M
3300031731\|Ga0307405_10969506	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	724	Open in IMG/M
3300031740\|Ga0307468_101081209	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300031740\|Ga0307468_101566090	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300031740\|Ga0307468_101772808	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	583	Open in IMG/M
3300031740\|Ga0307468_102475509	Not Available	508	Open in IMG/M
3300031754\|Ga0307475_11142195	Not Available	608	Open in IMG/M
3300031820\|Ga0307473_11409330	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	525	Open in IMG/M
3300031908\|Ga0310900_11152408	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	643	Open in IMG/M
3300031911\|Ga0307412_10904051	Not Available	774	Open in IMG/M
3300031946\|Ga0310910_10397326	Not Available	1092	Open in IMG/M
3300031995\|Ga0307409_100405661	Not Available	1303	Open in IMG/M
3300032003\|Ga0310897_10541540	Not Available	569	Open in IMG/M
3300032143\|Ga0315292_10810066	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300032174\|Ga0307470_11650625	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	538	Open in IMG/M
3300032180\|Ga0307471_101088665	Not Available	965	Open in IMG/M
3300032180\|Ga0307471_101322609	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300032828\|Ga0335080_11409787	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	692	Open in IMG/M
3300033289\|Ga0310914_10197476	All Organisms → cellular organisms → Bacteria	1795	Open in IMG/M
3300034354\|Ga0364943_0063224	All Organisms → cellular organisms → Bacteria	1244	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.38%
Host-Associated	Host-Associated	18.62%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.79%
Plants	Host-Associated → Plants	18.62%
Aquatic	Environmental → Aquatic	7.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.10%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.17%
Sediment	Environmental → Aquatic → Sediment	3.45%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.45%
Marine	Environmental → Aquatic → Marine	2.76%
Freshwater	Environmental → Aquatic → Freshwater	1.38%
Floodplain	Environmental → Terrestrial → Floodplain	0.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.17%
Loam	Environmental → Terrestrial → Soil → Loam	14.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.45%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.45%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.76%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.76%
Lake	Environmental → Aquatic → Freshwater → Lake	1.38%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.38%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.69%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.66%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.28%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.52%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.45%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.45%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.76%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.07%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.38%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.69%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.41%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.66%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.45%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.07%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.07%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.07%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.07%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.38%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.38%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.38%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.69%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.69%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.69%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.69%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.69%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.69%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.69%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.69%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.69%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004020	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2	Environmental	Open in IMG/M
3300004024	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005204	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012040	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT746_2	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014318	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019998	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m1	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026354	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028673	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-B	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0055440_101851842	3300004020	Natural And Restored Wetlands	MTTRRAWMFALVILAVALASGADAAPPKDAIVIGLLAEPVTMDPAQVTDLNSARVTKRIF
Ga0055436_100637001	3300004024	Natural And Restored Wetlands	MTTRRAWMFALVILAVALASGADAAPPKDAIVIGLLAEPVTMDPAQVTDLNSARV
Ga0055436_100999722	3300004024	Natural And Restored Wetlands	MTTRRSWMIALVILAVAMASGAAAAPPKDAMVIGLLAEPVTMDPAQVTDLNSARV
Ga0062593_1017830592	3300004114	Soil	MTIRRAWMMVSLVILTLVLASGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTKRIFEGLVAQEL
Ga0062592_1024103132	3300004480	Soil	MRGRIGIALAVVLALALIVPASAAPPRDTMVIGLVAEPVTMDPPQITDLNSSRVAKRIFEGLVAQEVGSYK
Ga0062591_1003703632	3300004643	Soil	MRTRRSLLAALVVVALSLVTAASAAPPRDAMVIGLLAEPVTMDPPQITDLNSTRVIKRMFEG
Ga0062591_1029437431	3300004643	Soil	MLIRRLAALALLLAFCLATGAAAAPPKDAMVVGLLAEPVTMDPPQITDLNSARITKRIF
Ga0062594_1026297391	3300005093	Soil	MSIRRLAALALLAVALSLVTGADAAPPKDAMVIGLLAEPVTMDPPQITDLNS
Ga0066679_103710862	3300005176	Soil	MRIHSIGLAALLLVLAGLAGGAAGAPPKDAIVIGLVAEPVTMDPPQITDLNSARVTKRIFEGLV
Ga0066678_105423172	3300005181	Soil	MTTRRTWMIAALILAIALVSGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTKRIFEGLVA
Ga0066675_108140612	3300005187	Soil	MTTRRTWMIAALILAIALVSGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTKRIFEGLVAQE
Ga0068997_100716372	3300005204	Natural And Restored Wetlands	MSRRRVWGIGLVLLAVVAASTATAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVIKRMFEGLTAQEL
Ga0066388_1041725712	3300005332	Tropical Forest Soil	MRTRRFVVAVLIGLGLVSAASAAPPKDAIVIGLVAEPVTMDPPQITDLNSARVTKRIFE
Ga0070708_1000500571	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTTRRTWMIAALILAIALVSDAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARITKRIFEGLVAQELGSYKLVPGL
Ga0070678_1012049542	3300005456	Miscanthus Rhizosphere	MSRRRAWGMGLGLVAVLLVSVAVAAPPKDAMVIGLLAEPVTMDPPQITDLN
Ga0070707_1008862382	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRRAWGIGLVLLAVVAVSTATAAPPKDAMVIGLLAEPVTMDPPQITDLNSARVTKRIFEGLV
Ga0070698_1014412542	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTTRRTWMIAALILAIALVSGAGAAPPKDAIVIGLLAEPVTMDPPQI
Ga0073909_104667702	3300005526	Surface Soil	MTIRRAWMIPLAILTAVVLASGAGAAPPKDAIVIGLLAEPVTMDPPQITDL
Ga0070697_1003763131	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRRAWGIGLVLLAVVLVSAAVAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVIKRMFEGLTAQE
Ga0066697_104778691	3300005540	Soil	MTIRRTWKIALAILAVALTSGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTKRIFEGLVAQE
Ga0070696_1011974521	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRRTWGIGLVLLAVALVSSATAAPPKDAIVIGLLAEPVTMDPPQITDL
Ga0070704_1006647982	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRRAWGMGLGLVAVLLVSVAVAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVIKRMFEGLTAQE
Ga0066661_108530291	3300005554	Soil	MTTRRTWMIAALILAIALVSGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTKRIFEGLVAQELGSYKLVP
Ga0066700_100160651	3300005559	Soil	MRRHPIALGVVLALVVISSASAAPPRDTMVIGLVAEPVTMDPPQITDLNSPRVAKRIFEG
Ga0070702_1000044241	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRRAWGIAVLLLMAVLAGSVAVAAPPKDAMVIGLLAEPVTMDPPQITDLNST
Ga0066905_1001355933	3300005713	Tropical Forest Soil	MTIRRVATLSLVILAVVFASGAVAAPPKDAIVIGLLAEPVTMDPAQVTDL
Ga0066903_1021168982	3300005764	Tropical Forest Soil	MTIRRVATLSLVILAMVFASGAVAAPPKDAIVIGLLAEPVTMDPAQVTDLNSARITK
Ga0066903_1022550881	3300005764	Tropical Forest Soil	MTIRRAFVSALVILAVALASGATAAPPKDAIVIGLLAEPVTMDPPQITDLNSARITKRIF
Ga0066903_1067735062	3300005764	Tropical Forest Soil	MTIRRVATLSLVILAVVFASGAVAAPPKDAIVIGLLAEPVTMDPAQ
Ga0074479_110269441	3300005829	Sediment (Intertidal)	MSRRRAWGIGLVLLAVVAVSTATAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVIKRIFEGLTAQEL
Ga0068851_104465282	3300005834	Corn Rhizosphere	MSRRRAWGIAVLLLMAVLAGSVAVAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRV
Ga0075024_1002798021	3300006047	Watersheds	MSRRRAWGMGWGLVAVLLVSVAIAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVI
Ga0070716_1010804771	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRRAWGIAVLLLMAVLAGSVAVAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVIKRMFEGLTAQELGTYKI
Ga0075422_102812531	3300006196	Populus Rhizosphere	MRTRHLAALALLVAFILVTGAAAAPPKDAMVVGLLAEPVTMDPPQITDLNSARITK
Ga0074051_106746592	3300006572	Soil	MTIRRAWMISLAILTAVVLASGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTKRIFEGLVAQELGSYKL
Ga0074054_117816511	3300006579	Soil	MTIRRAWMIPLAILTAVVLASGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTKRIFEGLVAQ
Ga0074062_123286501	3300006606	Soil	MTIRRAWMIPLAILTAVVLASGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTKRIFEGLVAQEL
Ga0075428_1026971321	3300006844	Populus Rhizosphere	MSRRTWIVAAVVVLSALASGVAAAPPKDAIVIGLLAEPVTMDPPQV
Ga0075430_1011737051	3300006846	Populus Rhizosphere	MSRRTWIVAAVVVLFALASGVAAAPPKDAIVIGLLAEPVTMDPPQVTDLNSARV
Ga0075431_1012333412	3300006847	Populus Rhizosphere	MSRRTWIVAAVVVLFALASGVAAAPPKDAIIIGLLAEPVTMDPPQVTDLNSARVT
Ga0075424_1012946511	3300006904	Populus Rhizosphere	MLTRRVMLAALALVAAAFVSVSPAAPPKDAIVVGLLAEPVTMDPPQISDLNSTRVIKRMFEGLTAQELGTYKI
Ga0075424_1020484442	3300006904	Populus Rhizosphere	MRTRRLVVAVLVAVGLVTAASAAPPKDAIVIGLVAEPVTMDPPQITDLNSARVT
Ga0075424_1028586341	3300006904	Populus Rhizosphere	MLTRRVALVALALIAAALVSVAPAAPPKDAMVIGLLAEPVTMDPPQISDLNST
Ga0079219_104027231	3300006954	Agricultural Soil	MSRRRAWGIGVLLLLAVLVGSVAVAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVIKRMFEG
Ga0075419_107738612	3300006969	Populus Rhizosphere	MGTRRFVVAVLVVLGLVTAASAAPPKDAIVIGLVAEPVTMDPPQITDLNSARVTKRIF
Ga0075419_112791591	3300006969	Populus Rhizosphere	MMLRRLTVLALLALGLVSGADAAPPKDAIVVGLLAEPVTMDPPQITDLNSARTTKRIFEGLVAQEL
Ga0066710_1041646491	3300009012	Grasslands Soil	MRRHAGIALVLVLLLAALVPADAAPPRDAIVIGLVAAPVTMDPPQITDPNSTRVAKRIFEGL
Ga0066710_1048477612	3300009012	Grasslands Soil	MRIHSIRLAALLLVLAGLAGGAAGAPPKDAIVIGLVAEPVTMDPPQITDLNSARVTKRIFEGLV
Ga0099828_114509831	3300009089	Vadose Zone Soil	MTRRTWMIAALILAIALVTGAGAAPPKDAMVIGLLAEPVTMDPPQITDLN
Ga0099827_106076391	3300009090	Vadose Zone Soil	MIVALILAIALVSGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTKRI
Ga0099827_114452361	3300009090	Vadose Zone Soil	MRRHLGIVLGVVLVLAAIIPADAAPPRDAIVIGLVAEPVTMDPPQITDLNSTRVAKRIFEGLVAQELGSYK
Ga0099827_119791561	3300009090	Vadose Zone Soil	MIAALILAIALVTGAGAAPPKDAMVIGLLAEPVTMDPPQITDLNSARVTKR
Ga0105250_105587092	3300009092	Switchgrass Rhizosphere	MAVLAGSVAVAAPPKDAMVTGLLAEPVTMDPPQITDLNSTRVIKRMFEGLTAQELGTY
Ga0075418_102621021	3300009100	Populus Rhizosphere	MRIRRLAGLALLAVALTLVAGADAAPPKDAMVIGLLAEPVTMDPPQITDLNSARITKRIFEGLVAQEVGSYKL
Ga0066709_1012220461	3300009137	Grasslands Soil	MRRHLGIVLGVVLALAAIIPADAAPPRDAIVIGLVAEPVTMDPPQITDLNSTRVAKRIFE
Ga0114129_107132211	3300009147	Populus Rhizosphere	MTIRRVVTLSFVILAGALASGADATPPKDAVVIGLLAEPVTMDPPQITDLNSTRVIKRMFEGLTAQELGTYKIVP
Ga0105242_125853322	3300009176	Miscanthus Rhizosphere	MTIRRAWMMVSLVILTLVLASGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTKRIFEGLVA
Ga0126382_108815711	3300010047	Tropical Forest Soil	MTIRRVVTLSLVILAVALASGAGAAPPKDAIVIGLLAEPVTMDPAQVTDLNSARITKRIF
Ga0126382_115166852	3300010047	Tropical Forest Soil	MRIRRLAALALLVAFSLVTGAAAAPPKDAMVVGLLAEPVTMDPPQITDLNSARIT
Ga0134065_101158891	3300010326	Grasslands Soil	MRIHPIRLAALLLVLVLAGLVGGAAGAPPRDAIVIGLVAEPVTMDPPQITDLNSARVTKRIFEGLVGQELGSYKLVP
Ga0134063_101665323	3300010335	Grasslands Soil	MRTRLAVLAVLAALGLVTSASAAPPKDAIVIGLVAEPVTMDPPQITDLNSA
Ga0126376_101206793	3300010359	Tropical Forest Soil	MRTRRFVVAVLVVLGQVTAASAAPPKDAIVIGLVAEPVTMDPPQITDLNSARVTKRIF
Ga0126372_105199722	3300010360	Tropical Forest Soil	MTIRRVATLSLVILAVVLASGAVAAPPKDAIVIGLLAEPVTMDPAQVT
Ga0126372_113753991	3300010360	Tropical Forest Soil	MTIRRVATLSLVILAVVLASGAVAAPPKDAIVIGLLAEPVTMDPAQVTDLNS
Ga0126378_123889951	3300010361	Tropical Forest Soil	MTIRRIATLSLVILAIALASGAGAAPPKDAIVIGLLAEPVTMDPAQVTDLNSA
Ga0136847_107995221	3300010391	Freshwater Sediment	MIAVLVLAVAVVSGASAAPPKDSIVIGLLAEPVTMDPPQITDLNSARVTKRIFE
Ga0134124_128126041	3300010397	Terrestrial Soil	MTIRRAWMIALVSLAVVLASGAGAAPPKDDIVIGLLAEPVTMDPPQITDLNSARVTKRIF
Ga0134127_128895851	3300010399	Terrestrial Soil	MTLRRLTVLALLVLGLVTGADAAPPKDAIVVGLLAEPVTMDPPQITDLNSARITKRIFEGLVAQE
Ga0134122_132679171	3300010400	Terrestrial Soil	MGLGLVAVLLVSVAVAAPPKDAMVVGLLAEPVTMDPPQITDLNSTRVIKRMFEGLTAQELGTYKI
Ga0137461_10850982	3300012040	Soil	MSRRRAWGIGLGLLAVALVSTATAAPPKDAIVIGLLAEPVTMDPPQVTDLNSTRVIKRMFEGLTAQE
Ga0137388_118388351	3300012189	Vadose Zone Soil	MRTRRLVLAVLAALAFVTGASAAPPKDAIVIGLVAEPVTMDPPQITDLNS
Ga0137399_116933492	3300012203	Vadose Zone Soil	MRTRRLVLAVLAALAFVTSASAAPPKDAIVIGLLAEPVTMDPPQITDL
Ga0137378_114555921	3300012210	Vadose Zone Soil	MIAALILAIALVSGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTKRIFEGLVAQELGSYK
Ga0137367_100484845	3300012353	Vadose Zone Soil	MTTRRTWLIALVILAVTLVSGAGAAPPKDAIVIGLLAEPVTMDPAQVTDLNSARVTK
Ga0137368_107361303	3300012358	Vadose Zone Soil	MTIRRTWKIALAILAVALTSGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTKRIFEGLVAQEL
Ga0137373_101555581	3300012532	Vadose Zone Soil	MTTRRTWLIALVILAVTLVSGAGAAPPKDAIVIGLLAEPVTMDPAQVTDLNSARVTKRIF
Ga0137358_104050491	3300012582	Vadose Zone Soil	MTTRRTWMIALVILALALASGASAAPPKDAIVIGLLAEPVTMDPAQVTDLNSA
Ga0137394_110195212	3300012922	Vadose Zone Soil	MPTRRLAALALLIAFSLVTGAAAAPPKDAMVVGLLAEPVTMDPPQITDLNS
Ga0137359_106145131	3300012923	Vadose Zone Soil	MRIHPIRLAALLLVLVLAGLVGGAAGAPPRDAIVIGLVAEPVTMDPPQITDLNSARVTKRIFEGLV
Ga0137416_114907962	3300012927	Vadose Zone Soil	MRTRRLVLAVLAALAFVTGASAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTKRIF
Ga0137407_101449961	3300012930	Vadose Zone Soil	MVTLVILAVALASGAVAAPPKDAIVIGLLAEPVTMDPAQVTDLNSARVTK
Ga0126369_118889081	3300012971	Tropical Forest Soil	MLNRRVALVAMVLIAAALVSVAPAAPPKDAMVIGLLAEPVTMDPPQISDLNSTRVIKRMFEGLTTQELGTYKIV
Ga0134087_103721021	3300012977	Grasslands Soil	MRTRLAVLAVLAALGLVTSASAAPPKDAIVIGLVAEPVTMDPPQITDLN
Ga0157378_124188402	3300013297	Miscanthus Rhizosphere	MGLALVAVLLVSVAVAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVI
Ga0075351_10440462	3300014318	Natural And Restored Wetlands	MSRRRVWGIGLVLLAVALVSTATAASPKDAMVIGLLAEPVTMDPPQITDLNSTRVIKRMF
Ga0157380_104698982	3300014326	Switchgrass Rhizosphere	MAVLAGSVAVAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRV
Ga0134085_100987641	3300015359	Grasslands Soil	MRTRLAVLAVLAVLAALGLVTSASAAPPKDAIVIGLVAEPVTMDPPQITDLNSARVTKRI
Ga0163161_100357031	3300017792	Switchgrass Rhizosphere	MRTRHLAALVLLVAFSLVTGAAAAPPKDAMVVGLLAEPVTMDPPQI
Ga0187775_104204811	3300017939	Tropical Peatland	MMTRRFAMVALVLMAAGLASHASAAPPRDAIVIGLLAEPVTMDP
Ga0184626_100371433	3300018053	Groundwater Sediment	MSRRRAWGIGLGLLAVALVSTATAAPPKDAIVIGLLAEPVTMDPPQITDLNSTRVI
Ga0187773_100679501	3300018064	Tropical Peatland	MMTRRFALVALVLMAAGLASHASAAPPRDAIVIGLLAEPVTMDPPQVTDLNSTRVIKRMFEGLTAQEL
Ga0184640_104122571	3300018074	Groundwater Sediment	MSRRRAWGIGLVLLAVALVSVATAAPPKDAIVIGLLAEPVTMDPPQITDLNSTR
Ga0066667_102569121	3300018433	Grasslands Soil	MRTRRLVLAVLAALAFVTGASAAPPKDPIVIGLVAEPVTMDRPQITDL
Ga0193710_10034623	3300019998	Soil	MSRRRAWGIGLVLLAVGVVSPATAAPPKDAMVIGLLAEPVTMDPPQITGSA
Ga0193731_11584382	3300020001	Soil	MSRRRAWGIGLVLLAVVAVSTATAAPPKDAMVIGLLAEPVTMDPPQITDLNSARVTKRIFEGLVAQELGSYKLI
Ga0187768_10759271	3300020150	Tropical Peatland	MSRRRAWGIGLLLVAGALVSTAVAAPPKDAIVIGLLAEPVTMDPPQGTDLN
Ga0126371_103609903	3300021560	Tropical Forest Soil	MTIRRIATLSLVILAVSFASGAGAAPPKDAIVIGLLAEPVTMDPAQVTDLNSARITKRIF
Ga0207653_101478352	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRRAWGIGLVLLAVVAVSTATAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVIKRMFEGLTAQEL
Ga0207692_104914611	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRRAWTMGLALVAVLLVSVAVAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVIK
Ga0207684_100587154	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTTRRTWMIAALILAIALVSDAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARITKRIFEGLVAQE
Ga0207663_101027653	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRRAWTMGLALVAVLLVSVAVAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVIKRMFEGLT
Ga0207706_114533831	3300025933	Corn Rhizosphere	MSRRRAWGIGLVLLAVVAVSTATAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVIKRMFEGLTAQELGTYK
Ga0207665_114135072	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRRAWGIAVLLLMAVLAGSVAVAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVIKRMFEGLTAQELGTYKIIP
Ga0207691_106453252	3300025940	Miscanthus Rhizosphere	MSRRRAWGIAVLLLMAVLAGSVAVAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVIK
Ga0207711_107412321	3300025941	Switchgrass Rhizosphere	MTIRRAGMIAFVMLVVVLASGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTKRIS
Ga0207708_117185611	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MSTRRLAALVLIVALSLVTGAAAAPPKDAMVIGLLAEPVTMDPPQITDLNSARITKRI
Ga0207675_1002154361	3300026118	Switchgrass Rhizosphere	MLIRRLAALALLVAFCLVTGAAAAPPKDAMVVGLLAEPVTMDPPQITDLNSARITKRIFEGLVAQE
Ga0207698_123918061	3300026142	Corn Rhizosphere	MSRRRAWGIAVLLLMAVLAGSVAVAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVIKRMFEGLTA
Ga0209471_10751992	3300026318	Soil	MTTRRTWMIAALILAIALVSGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNS
Ga0209801_11169551	3300026326	Soil	MRIHPIRLAALLLVLVLAGLVGGAAGAPPRDAIVIGLVAEPVTMDPPQITDLNSARVTKRIFEGLVGQELG
Ga0257180_10636162	3300026354	Soil	MKTRRAWMVTLVILAVALASGAVAAPPKDAIVIGLLAEPVTMDPAQVTDLNSAR
Ga0257163_10504971	3300026359	Soil	MSRRRAWGMGLGLVAVLLVSVAVAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVIKRMFEGLTAQ
Ga0257173_10178001	3300026360	Soil	MSRRRAWGMGLGLVAVLLVSVAVAAPPKDAMVIGLLAEPVTMDPPQITDLNSTR
Ga0209073_102315812	3300027765	Agricultural Soil	MSRRRAWTMGLALVAVLLVSVAVAAPPKDAMVIGLLAEPVTMDPPQITDLNSTR
Ga0209074_100167263	3300027787	Agricultural Soil	MSRRRAWGIAVLLLMAVLAGSAAVAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVIKRMFEGLTA
Ga0209465_101086331	3300027874	Tropical Forest Soil	MTIRRVATLSLVILAVVLASGAVAAPPKDAIVIGLLAEPVTMDPAQVTDL
Ga0209465_104795541	3300027874	Tropical Forest Soil	MTIRRVATLSLVILAMVFASGAVAAPPKDAIVIGLLAEPVTMDPAQVTDL
Ga0209590_106232771	3300027882	Vadose Zone Soil	MTTRRTWMIVALILAIALVSGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTKRIF
Ga0209590_107000631	3300027882	Vadose Zone Soil	MTTRRTWMIAALILAVALVSGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTKRIFEGLVAQELGSYK
Ga0209590_108404251	3300027882	Vadose Zone Soil	MTTRRTWMIAALILAIAFVTGAGAAPPKDAMVIGLLAEPVTMDPPQITDLNSARVTK
Ga0257175_11086861	3300028673	Soil	MTTRRTWMIAALILAVALVSGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTK
Ga0307504_100242491	3300028792	Soil	MSRRRAWGIGLGLLAMALVSVATAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVIKRLF
Ga0170818_1010293432	3300031474	Forest Soil	MTTRRTWMIALVILAVALVSGADAAPPKDAIVIGLLAEPVTMDPAQVTDL
Ga0310888_110053942	3300031538	Soil	MSIRRLAALALFALVLSLVTGADAAPPKDAIVVGLLAEPVTMDPPQITDLNSARITKRIFEGLVAQELGSYK
Ga0307469_110672501	3300031720	Hardwood Forest Soil	MTRRTWILALVILAVALVSGADAAPPKDAIVIGLLAEPVTMDPAQVT
Ga0307405_107421442	3300031731	Rhizosphere	MRTRRSALTALALVLLALVTSASAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVIKRMFEGLTAQELGSYKIVPGL
Ga0307405_109695062	3300031731	Rhizosphere	MRTRRSVLAVLVALTLVTVASAAPPKDALVIGLLAEPVTMDPPQITDLNSTRVIKRMFEGLTAQELGSYKIV
Ga0307468_1010812091	3300031740	Hardwood Forest Soil	MRIRRLAALALLVAFSLVTGAAAAPPKDAMVVGLLAEPVTMDPPQITDLNSARITK
Ga0307468_1015660902	3300031740	Hardwood Forest Soil	MRTRRVILAVLAALSLVTAASAAPPKDAIVIGLVAEPVTMDPPQITDLNSARVTKRIFE
Ga0307468_1017728083	3300031740	Hardwood Forest Soil	MTIRRAWMIALVIVAVVSASGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTKRI
Ga0307468_1024755091	3300031740	Hardwood Forest Soil	MTTRRTWMIALVILAVALASGADAAPPKDAIVIGLLAEPVTMDPAQVTDLNS
Ga0307475_111421952	3300031754	Hardwood Forest Soil	MSRRRAWGIGLVLLAVALGSTAVAAPPKDAIVIGLLAEPVTMDPPQITDLNSTRVIKRMF
Ga0307473_114093302	3300031820	Hardwood Forest Soil	MLTRRVALVALALVAAALVSVSLAAPPKDAIVIGLLAEPVTMDPPQISDLNSTRVIKRMFEGLTAQELGTYKIIPGL
Ga0310900_111524081	3300031908	Soil	MRTRHLAALALLVAFSLVTGAVAAPPKDAMVVGLLAEPVTMDPPQITDLNSARIT
Ga0307412_109040512	3300031911	Rhizosphere	MRTRRSVLAVLVALTLVTVASAAPPKDALVIGLLAEPVTMDPPQITDLNSTRVIKRMFEGLT
Ga0310910_103973261	3300031946	Soil	MTIRRIATLSLVILAVSFASGAGAAPPKDAIVIGLLAEPVTMDPAQVTDLYSAR
Ga0307409_1004056611	3300031995	Rhizosphere	MRTRRSALTALVLVLLALVTAASAAPPKDAMVIGLLAEPVTMDPPQITDLNSTRVIKR
Ga0310897_105415401	3300032003	Soil	MSRRHVWGIGLVFLAVAVASVAVAAPPKDAMVVGLLAEPVTMDPPQITDLNSTRVIKRMFEGLTAQELGTYK
Ga0315292_108100662	3300032143	Sediment	MTIRRTWMIALVIVAVALASGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSARVTKRIFEGLVAQELGS
Ga0307470_116506251	3300032174	Hardwood Forest Soil	MLIRRLAALALLVAFCLVTGAAAAPPKDAMVVGLLAEPVTMDPPQITDLNSARITKRIFE
Ga0307471_1010886651	3300032180	Hardwood Forest Soil	MSRRRTWGVGLVLLAVALVSTATAAPPKDAIVIGLLAEPVTMDPPQITDLNSTRVIKRMFEGLTAQ
Ga0307471_1013226092	3300032180	Hardwood Forest Soil	MRRHFGIVLAVVLALAAVIPADAAPPRDTMVIGLVAEPVTMDPPQITDLNSTRVAKRIFEGLVAQELGSY
Ga0335080_114097871	3300032828	Soil	MQRYATWPTLVLLIGLAALPAAHGAPPKDAMVIGLLAEPVTMDPPQVTDLNS
Ga0310914_101974763	3300033289	Soil	MTIRRIATLSLVILAVSFASGAGAAPPKDAIVIGLLAEPVTMDPAQ
Ga0364943_0063224_1_144	3300034354	Sediment	MMSLAILTAVVLASGAGAAPPKDAIVIGLLAEPVTMDPPQITDLNSAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F050595

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences