Metagenome / Metatranscriptome Family F050355

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F050355
Family Type	Metagenome / Metatranscriptome
Number of Sequences	145
Average Sequence Length	69 residues
Representative Sequence	MVNRTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS
Number of Associated Samples	121
Number of Associated Scaffolds	145

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.08 %
% of genes near scaffold ends (potentially truncated)	95.86 %
% of genes from short scaffolds (< 2000 bps)	87.59 %
Associated GOLD sequencing projects	119
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.172 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.345 % of family members)
Environment Ontology (ENVO)	Unclassified (37.241 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.448 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.14
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.14
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 145 Family Scaffolds
PF08448	PAS_4	31.72
PF13185	GAF_2	3.45
PF07536	HWE_HK	2.76
PF08447	PAS_3	2.07
PF00072	Response_reg	0.69
PF13565	HTH_32	0.69
PF13458	Peripla_BP_6	0.69
PF11716	MDMPI_N	0.69
PF01590	GAF	0.69

COG ID	Name	Functional Category	% Frequency in 145 Family Scaffolds
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	2.76
COG4251	Bacteriophytochrome (light-regulated signal transduction histidine kinase)	Signal transduction mechanisms [T]	2.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.17 %
Unclassified	root	N/A	4.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.17 %
Unclassified	root	N/A	4.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.17 %
Unclassified	root	N/A	4.83 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	94.48 %
Unclassified	root	N/A	4.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.69 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	64.83 %
Unclassified	root	N/A	4.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.69 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	14.48 %
Unclassified	root	N/A	4.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.76 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.69 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.48 %
Unclassified	root	N/A	4.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.76 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.69 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.48 %
Unclassified	root	N/A	4.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.76 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.69 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10029175	All Organisms → cellular organisms → Bacteria → Proteobacteria	1494	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1009022	All Organisms → cellular organisms → Bacteria → Proteobacteria	1911	Open in IMG/M
3300001867\|JGI12627J18819_10050330	All Organisms → cellular organisms → Bacteria → Proteobacteria	1739	Open in IMG/M
3300002244\|JGI24742J22300_10007534	All Organisms → cellular organisms → Bacteria → Proteobacteria	1796	Open in IMG/M
3300002568\|C688J35102_120654608	Not Available	1301	Open in IMG/M
3300004479\|Ga0062595_100519954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	900	Open in IMG/M
3300005093\|Ga0062594_102225952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594	Open in IMG/M
3300005332\|Ga0066388_108324693	Not Available	517	Open in IMG/M
3300005354\|Ga0070675_100131840	All Organisms → cellular organisms → Bacteria → Proteobacteria	2130	Open in IMG/M
3300005363\|Ga0008090_10239435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1108	Open in IMG/M
3300005454\|Ga0066687_10106019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1426	Open in IMG/M
3300005471\|Ga0070698_100223931	All Organisms → cellular organisms → Bacteria → Proteobacteria	1814	Open in IMG/M
3300005615\|Ga0070702_100016492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3791	Open in IMG/M
3300005713\|Ga0066905_101591895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	597	Open in IMG/M
3300005713\|Ga0066905_101796458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	565	Open in IMG/M
3300005764\|Ga0066903_101086309	All Organisms → cellular organisms → Bacteria → Proteobacteria	1473	Open in IMG/M
3300005764\|Ga0066903_102068075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1095	Open in IMG/M
3300005764\|Ga0066903_107254654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	573	Open in IMG/M
3300005981\|Ga0081538_10098681	All Organisms → cellular organisms → Bacteria → Proteobacteria	1479	Open in IMG/M
3300006574\|Ga0074056_11138045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	655	Open in IMG/M
3300006800\|Ga0066660_10282932	All Organisms → cellular organisms → Bacteria → Proteobacteria	1315	Open in IMG/M
3300006871\|Ga0075434_100676282	All Organisms → cellular organisms → Bacteria → Proteobacteria	1050	Open in IMG/M
3300006953\|Ga0074063_10111227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	682	Open in IMG/M
3300009089\|Ga0099828_10031968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4245	Open in IMG/M
3300009090\|Ga0099827_10334048	All Organisms → cellular organisms → Bacteria → Proteobacteria	1287	Open in IMG/M
3300009100\|Ga0075418_11384774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	763	Open in IMG/M
3300009100\|Ga0075418_12974114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	517	Open in IMG/M
3300009792\|Ga0126374_10083166	All Organisms → cellular organisms → Bacteria → Proteobacteria	1757	Open in IMG/M
3300009792\|Ga0126374_10226644	All Organisms → cellular organisms → Bacteria → Proteobacteria	1203	Open in IMG/M
3300009792\|Ga0126374_10987683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	659	Open in IMG/M
3300010043\|Ga0126380_10869051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	746	Open in IMG/M
3300010046\|Ga0126384_10466596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1081	Open in IMG/M
3300010047\|Ga0126382_10189673	All Organisms → cellular organisms → Bacteria → Proteobacteria	1452	Open in IMG/M
3300010047\|Ga0126382_10554989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	936	Open in IMG/M
3300010159\|Ga0099796_10474727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	558	Open in IMG/M
3300010360\|Ga0126372_10366332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1300	Open in IMG/M
3300010361\|Ga0126378_13113203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	528	Open in IMG/M
3300010361\|Ga0126378_13406582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	505	Open in IMG/M
3300010362\|Ga0126377_10784942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1010	Open in IMG/M
3300010373\|Ga0134128_12691551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	548	Open in IMG/M
3300010398\|Ga0126383_10370057	All Organisms → cellular organisms → Bacteria → Proteobacteria	1460	Open in IMG/M
3300010398\|Ga0126383_13138086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	540	Open in IMG/M
3300011119\|Ga0105246_10236815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1441	Open in IMG/M
3300012205\|Ga0137362_11226811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	634	Open in IMG/M
3300012208\|Ga0137376_11531857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	558	Open in IMG/M
3300012908\|Ga0157286_10148461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	744	Open in IMG/M
3300012929\|Ga0137404_10714531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	907	Open in IMG/M
3300012957\|Ga0164303_10333415	Not Available	909	Open in IMG/M
3300012957\|Ga0164303_11163875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	561	Open in IMG/M
3300012971\|Ga0126369_12546387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	597	Open in IMG/M
3300012986\|Ga0164304_11026027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	655	Open in IMG/M
3300015371\|Ga0132258_10911064	All Organisms → cellular organisms → Bacteria → Proteobacteria	2220	Open in IMG/M
3300015371\|Ga0132258_11355087	All Organisms → cellular organisms → Bacteria → Proteobacteria	1798	Open in IMG/M
3300015372\|Ga0132256_100344450	All Organisms → cellular organisms → Bacteria → Proteobacteria	1583	Open in IMG/M
3300015372\|Ga0132256_101819652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	717	Open in IMG/M
3300015372\|Ga0132256_102916744	Not Available	575	Open in IMG/M
3300016371\|Ga0182034_12015131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	510	Open in IMG/M
3300016387\|Ga0182040_11198347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	639	Open in IMG/M
3300016404\|Ga0182037_10466865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1052	Open in IMG/M
3300018476\|Ga0190274_10801754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	999	Open in IMG/M
3300019259\|Ga0184646_1638961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594	Open in IMG/M
3300019362\|Ga0173479_10815970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300020579\|Ga0210407_11440264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	510	Open in IMG/M
3300021078\|Ga0210381_10260659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	618	Open in IMG/M
3300025910\|Ga0207684_10844693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	772	Open in IMG/M
3300025916\|Ga0207663_11685675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	510	Open in IMG/M
3300025924\|Ga0207694_10510145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1007	Open in IMG/M
3300025927\|Ga0207687_11556636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	568	Open in IMG/M
3300025928\|Ga0207700_11794965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	539	Open in IMG/M
3300025934\|Ga0207686_11382995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	579	Open in IMG/M
3300025981\|Ga0207640_10282578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1304	Open in IMG/M
3300026095\|Ga0207676_11326980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	714	Open in IMG/M
3300026121\|Ga0207683_10834805	Not Available	855	Open in IMG/M
3300027388\|Ga0208995_1008538	All Organisms → cellular organisms → Bacteria → Proteobacteria	1725	Open in IMG/M
3300027546\|Ga0208984_1021122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1320	Open in IMG/M
3300027633\|Ga0208988_1089131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	770	Open in IMG/M
3300027654\|Ga0209799_1036487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1094	Open in IMG/M
3300027748\|Ga0209689_1208235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	849	Open in IMG/M
3300027875\|Ga0209283_10208614	All Organisms → cellular organisms → Bacteria → Proteobacteria	1297	Open in IMG/M
3300027882\|Ga0209590_10556963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	739	Open in IMG/M
3300028587\|Ga0247828_10093149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1411	Open in IMG/M
3300028744\|Ga0307318_10166573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	758	Open in IMG/M
3300028754\|Ga0307297_10009399	All Organisms → cellular organisms → Bacteria → Proteobacteria	2548	Open in IMG/M
3300028784\|Ga0307282_10333008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	733	Open in IMG/M
3300028793\|Ga0307299_10005125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4538	Open in IMG/M
3300028828\|Ga0307312_10721067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	660	Open in IMG/M
3300028872\|Ga0307314_10216807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	582	Open in IMG/M
3300028906\|Ga0308309_11338634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	615	Open in IMG/M
3300030829\|Ga0308203_1030237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	752	Open in IMG/M
3300031545\|Ga0318541_10422265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	745	Open in IMG/M
3300031545\|Ga0318541_10517601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	667	Open in IMG/M
3300031546\|Ga0318538_10028110	All Organisms → cellular organisms → Bacteria → Proteobacteria	2594	Open in IMG/M
3300031546\|Ga0318538_10475042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300031546\|Ga0318538_10727288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	538	Open in IMG/M
3300031561\|Ga0318528_10286289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	884	Open in IMG/M
3300031564\|Ga0318573_10024703	All Organisms → cellular organisms → Bacteria → Proteobacteria	2747	Open in IMG/M
3300031573\|Ga0310915_10225835	All Organisms → cellular organisms → Bacteria → Proteobacteria	1314	Open in IMG/M
3300031573\|Ga0310915_10924640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	610	Open in IMG/M
3300031640\|Ga0318555_10151272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1242	Open in IMG/M
3300031668\|Ga0318542_10016357	All Organisms → cellular organisms → Bacteria → Proteobacteria	2954	Open in IMG/M
3300031668\|Ga0318542_10154087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1143	Open in IMG/M
3300031681\|Ga0318572_10122115	All Organisms → cellular organisms → Bacteria → Proteobacteria	1488	Open in IMG/M
3300031713\|Ga0318496_10524264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	655	Open in IMG/M
3300031719\|Ga0306917_11092296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	621	Open in IMG/M
3300031720\|Ga0307469_12176317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	540	Open in IMG/M
3300031723\|Ga0318493_10630957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	598	Open in IMG/M
3300031744\|Ga0306918_10043450	All Organisms → cellular organisms → Bacteria → Proteobacteria	2938	Open in IMG/M
3300031751\|Ga0318494_10102431	All Organisms → cellular organisms → Bacteria → Proteobacteria	1579	Open in IMG/M
3300031763\|Ga0318537_10014716	All Organisms → cellular organisms → Bacteria → Proteobacteria	2677	Open in IMG/M
3300031765\|Ga0318554_10337481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	857	Open in IMG/M
3300031777\|Ga0318543_10460444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	570	Open in IMG/M
3300031777\|Ga0318543_10555718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300031778\|Ga0318498_10074942	All Organisms → cellular organisms → Bacteria → Proteobacteria	1522	Open in IMG/M
3300031793\|Ga0318548_10197655	All Organisms → cellular organisms → Bacteria → Proteobacteria	986	Open in IMG/M
3300031793\|Ga0318548_10492029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	600	Open in IMG/M
3300031798\|Ga0318523_10569416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	558	Open in IMG/M
3300031805\|Ga0318497_10428991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	740	Open in IMG/M
3300031819\|Ga0318568_10030978	All Organisms → cellular organisms → Bacteria → Proteobacteria	2985	Open in IMG/M
3300031845\|Ga0318511_10064037	All Organisms → cellular organisms → Bacteria → Proteobacteria	1505	Open in IMG/M
3300031860\|Ga0318495_10125444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1157	Open in IMG/M
3300031897\|Ga0318520_10046897	All Organisms → cellular organisms → Bacteria → Proteobacteria	2254	Open in IMG/M
3300031908\|Ga0310900_11210734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	629	Open in IMG/M
3300031912\|Ga0306921_10332845	All Organisms → cellular organisms → Bacteria → Proteobacteria	1777	Open in IMG/M
3300031941\|Ga0310912_10136270	All Organisms → cellular organisms → Bacteria → Proteobacteria	1841	Open in IMG/M
3300031954\|Ga0306926_10102976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3502	Open in IMG/M
3300031954\|Ga0306926_10243268	All Organisms → cellular organisms → Bacteria → Proteobacteria	2230	Open in IMG/M
3300031981\|Ga0318531_10060961	All Organisms → cellular organisms → Bacteria → Proteobacteria	1617	Open in IMG/M
3300032013\|Ga0310906_11466933	Not Available	502	Open in IMG/M
3300032025\|Ga0318507_10037050	All Organisms → cellular organisms → Bacteria → Proteobacteria	1857	Open in IMG/M
3300032039\|Ga0318559_10119329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1181	Open in IMG/M
3300032041\|Ga0318549_10198053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	901	Open in IMG/M
3300032043\|Ga0318556_10082323	All Organisms → cellular organisms → Bacteria → Proteobacteria	1608	Open in IMG/M
3300032052\|Ga0318506_10101695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1228	Open in IMG/M
3300032063\|Ga0318504_10409893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	646	Open in IMG/M
3300032065\|Ga0318513_10040343	All Organisms → cellular organisms → Bacteria → Proteobacteria	2056	Open in IMG/M
3300032066\|Ga0318514_10519253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	634	Open in IMG/M
3300032068\|Ga0318553_10338431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	788	Open in IMG/M
3300032076\|Ga0306924_11431281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	736	Open in IMG/M
3300032261\|Ga0306920_100397438	All Organisms → cellular organisms → Bacteria → Proteobacteria	2049	Open in IMG/M
3300032261\|Ga0306920_101289341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1051	Open in IMG/M
3300033289\|Ga0310914_10173638	All Organisms → cellular organisms → Bacteria → Proteobacteria	1914	Open in IMG/M
3300033289\|Ga0310914_10548218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1045	Open in IMG/M
3300033290\|Ga0318519_10313868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	920	Open in IMG/M
3300033475\|Ga0310811_10857325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	832	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.59%
Host-Associated	Host-Associated	12.41%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.21%
Plants	Host-Associated → Plants	12.41%
Aquatic	Environmental → Aquatic	1.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.14%
Freshwater	Environmental → Aquatic → Freshwater	1.38%
Roots	Host-Associated → Plants → Roots	0.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.10%
Loam	Environmental → Terrestrial → Soil → Loam	13.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.76%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.07%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.38%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.69%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.69%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.07%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.07%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.07%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.38%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.38%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.69%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.69%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.66%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.59%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.52%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.07%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.07%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.07%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.07%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.38%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.38%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.38%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.69%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.69%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.69%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.69%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.69%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.69%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.69%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002244	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006574	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027546	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100291752	3300000597	Forest Soil	AAPSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAETIVPPAPAPKPRLLDGCEPVVSAIGHSPLSQVPGRCVS*
AF_2010_repII_A100DRAFT_10090221	3300000655	Forest Soil	TTAAPSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAETIVPPAPAPKPRLLDGCEPVVSAIGHSPLSQVPGRCVS*
JGI12627J18819_100503302	3300001867	Forest Soil	SDRMPLASTKSRNAVNGPAETIVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS*
JGI24742J22300_100075343	3300002244	Corn, Switchgrass And Miscanthus Rhizosphere	EVSATTAAPSAGQTTLTINRALKSDRMPLVPVKSHNAVNSPAETNAPTGTPAPKPRLLDGCEPMVSAIGQSPLAQIAGRCVS*
C688J35102_1206546083	3300002568	Soil	NRTLKSDRMPLVPAITRNAVNGPVETNAPTATPGPKPLLLDGCEPMVSAIGQSPLAQIAGRCVS*
Ga0062595_1005199542	3300004479	Soil	TTAAPSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAEITVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS*
Ga0062594_1022259521	3300005093	Soil	MPVVPVKSHNAVNGPAETNAPTGTPVPKPRLLDGCEPMVSAIGQSPLAQIAGRCVS*
Ga0066388_1083246931	3300005332	Tropical Forest Soil	TATTAAPSVEQTTVNRALKGDRLQVSPSMSRNAVNGPFEIKAPKAPAAAPELLEGCEPVVSSIGQTPLAKIAGRCVS*
Ga0070675_1001318401	3300005354	Miscanthus Rhizosphere	LEVSATTAAPSAGQTTLTINRALKSDRMPLVPVKSHNAVNSPAETNAPTGTPAPKPRLLDGCEPMVSAIGQSPLAQIAGRCVS*
Ga0008090_102394352	3300005363	Tropical Rainforest Soil	STTAAPSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAEITVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS*
Ga0066687_101060191	3300005454	Soil	LKSDRLPVVLNKSRNAVNGPTETQAPPAPTPKPKLLDGCEPMVSAIGHSPLAQIAGRCVS
Ga0070698_1002239312	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	TTAAPSTDRTATSVNRTLKGDRLPLVPGKSRNAVNGPIELKAPAASRPELLDGCEPVVSSIGQSPLAQIAGRCVS*
Ga0070702_1000164923	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	AGQTTLTINRALKSDRMPLIPVKSHNAVNSPAETNAPTATPAPRPRLLDGCEPMVSAIGQSPLAQIAGRCVS*
Ga0066905_1015918952	3300005713	Tropical Forest Soil	IARSAPMVNRTLKSDRMPLVSTKSRNAVNGPAEMTPAPAPTPKPKLLDGCEPVVSQIGHSPLAQIAGRCVS*
Ga0066905_1017964582	3300005713	Tropical Forest Soil	VTRTAPMVNRTLKSDRMPLVSTKSRNAVNGPTEIKVPPAPAPKPKLLDGCEPVVSAIGHSPLAQIAGRCVS*
Ga0066903_1000354517	3300005764	Tropical Forest Soil	NRALKGDRLQVAPGMSRNAVNGPFEIKAPKAPAPAPELLDGCEPVVSSIGQTPLAKIAGRCVS*
Ga0066903_1010863092	3300005764	Tropical Forest Soil	TAPMVNRNLKSDRMPLASAKSRNAVNGPAETIVPPAPAPKPKLLDGCEPVVSAIGHSPLSQVAGRCVS*
Ga0066903_1020680752	3300005764	Tropical Forest Soil	STTAAPSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAETIVPPAPAPKPRLLDGCEPVVSAIGHSPLSQVPGRCVS*
Ga0066903_1072546542	3300005764	Tropical Forest Soil	MVNRTLKSDRMPLVSTKSRNAVNGPAEMTPAPAPTPKPKLLDGCEPVVSQIGHSPLAQIAGRCVS*
Ga0081538_100986813	3300005981	Tabebuia Heterophylla Rhizosphere	TTVNRMLKSDRMQVTPTNSRNAVNGPIQIKAPPAPAPKPRLLDGCEPMVSAIGQSPLAQVPGRCVS*
Ga0074056_111380451	3300006574	Soil	LKSDRMPLVPVKSHNAVNSPAETNAPTGTPAPKPRLLDGCEPMVSAIGQSPLAQIAGRCVS*
Ga0066660_102829321	3300006800	Soil	KSDRLPLVSIKSRNAVNGPAEMQPAPAPAPKPRLLDGCEPIVSAIGQTPLAQVAGRCVS*
Ga0075434_1006762822	3300006871	Populus Rhizosphere	RALKGDRLQTLPGMSRNAVNGPIELKAPAPVARPQLLDGCEPVVSAIGQSPLAQIPGRCVS*
Ga0074063_101112271	3300006953	Soil	LTINRALKSDRMPLVPVKSHNAVNSPAETNAPTGTPAPKPRLLDGCEPMVSAIGQSPLAQIAGRCVS*
Ga0099828_100319684	3300009089	Vadose Zone Soil	PSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS*
Ga0099827_103340482	3300009090	Vadose Zone Soil	IARTAPMVNRTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS*
Ga0075418_113847741	3300009100	Populus Rhizosphere	VSATTAAPSLGQSATTVNRALKSDRMQVTPANSRNAVNGPIEIKAPPAPKPRLLDGCEPMVSAIGQSPLAQIPGRCVS*
Ga0075418_129741141	3300009100	Populus Rhizosphere	AAPSAGQTTLTINRALKSDRMPLVPVKSHNAVNSPAETNAPTGTPAPKPRLLDGCEPMVSAIGQSPLAQIAGRCVS*
Ga0126374_100831662	3300009792	Tropical Forest Soil	APMVNRTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS*
Ga0126374_102266441	3300009792	Tropical Forest Soil	TAPMVNRTLKSDRMPLASTKSRNAVNGPAEITVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS*
Ga0126374_109876831	3300009792	Tropical Forest Soil	ARTAPMVNRTLKSDRMPLASTKSRNAVNGPAETIVPPAPAPKPRLLDGCEAVVSAIGHSPLSQVPGRCVS*
Ga0126380_108690511	3300010043	Tropical Forest Soil	PMVNRTLKSDRMPLASTKSRNAVNGPAEMTAPPAPAPKPKLLDGCEPVVSAIGHSPLAQIPGRCVS*
Ga0126384_104665962	3300010046	Tropical Forest Soil	MPLASTKSRNAVNGPAEMTIPPAPAPKPKLLDGCEPVVSAIGHSPLAQVPGRCVS*
Ga0126382_101896731	3300010047	Tropical Forest Soil	SIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAEITVPPAPAPKPRLLDGCEPVVSAIGHSPLAQIPGRCVS*
Ga0126382_105549891	3300010047	Tropical Forest Soil	ARSAPMVNRTLKSDRMPLVSTKSRNAVNGPAEMTPAPAPAPKPKLLDGCEPVVSAIGHSPLAQIPGRCVS*
Ga0099796_104747272	3300010159	Vadose Zone Soil	ATSVNRTLKGDRLPLTPGKSRNAVNGPFELKAPPASRPELLDGCEPVVSSIGQSPLAQIAGRCVS*
Ga0126372_103663321	3300010360	Tropical Forest Soil	TLKSDRMPLVSTKSRNAVNGPAEMTAPPAPAPKPKLLDGCEPVVSQIGHSPLAQIPGRCVS*
Ga0126378_131132031	3300010361	Tropical Forest Soil	PSADRSAAMVNRALKGDRLPLIPGKSRNAVNGPFELKAPVAAKPKLLDGCEPVVSAIGQSPLAQIPGRCVS*
Ga0126378_134065822	3300010361	Tropical Forest Soil	RTAPMVNRTLKSDRMPLASTKSRNAVNGPAETIVPPAPAPKPRLLDGCEPVVSAIGHSPLSQVPGRCVS*
Ga0126377_107849422	3300010362	Tropical Forest Soil	DRLPLIPGKSRNAVNGPFELKAPPVAKPRLLEGCEPVVSAIGQSPLAQIPGRCVS*
Ga0134128_126915511	3300010373	Terrestrial Soil	KSDRLPVVLSKSRNAVNGPAETQAPPAPAPKPKLLDGCEPMVSAIGHSPLAQIAGRCVS*
Ga0126383_103700572	3300010398	Tropical Forest Soil	NRTLKSDRMPLASTKSRNAVNGPAEITVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS*
Ga0126383_131380861	3300010398	Tropical Forest Soil	SLTRTAPMVNRTLKSDRMPLASTKSRNAVNGPAEIIVPPAPAPKPRLLDGCEPVVSAIGHSPLAQIPGRCVS*
Ga0105246_102368151	3300011119	Miscanthus Rhizosphere	GQTSLTINRTLKSDRMPLVPAITRNAVNGPVETNAPTATPDPKPLLLDGCEPMVSAIGQSPLAQIAGRCVS*
Ga0137362_112268112	3300012205	Vadose Zone Soil	PSTDRSATSVNRTLKGDRLPLLPGRSRNAVNGPVELKAPAARPELLDGCEPVVSAIGQSPLAQIAGRCVS*
Ga0137376_115318571	3300012208	Vadose Zone Soil	VSATTAAPSLGQTAPMVNRVLKGDRMPVVSTKSLNAVNGPIEIKAPAPTPKPRLPDGCEPVISQIGQSPLAQIPGRCIS*
Ga0157286_101484611	3300012908	Soil	GLEVSATTAAPSAGQTTLTINRALKSDRMPLVPVKSHNAVNSPAETNAPTGTPAPRPRLLDGCEPMVSAIGQSPLAQIAGRCVS*
Ga0137404_107145311	3300012929	Vadose Zone Soil	LEVSSTATTAAPSVEQTTVNRTLKGDRMQTVPSKSRNAVNGPLEIKAPQSPAALPELLDGCEPVISSIGQTPLAKIAGRCVS*
Ga0164303_103334151	3300012957	Soil	NRTLKSDRMPLVPAITRNAVNGAVETNAPTATPGPKPLLLDGCEPMVSAIGQSPLAQIAGRCVS*
Ga0164303_111638751	3300012957	Soil	PAAPMVERALKSDRLPLVPVKSRNAIKGPIETNAPAATPAPKPRLLDGCEPMVSAIGQSPLAQVAGRCVS*
Ga0126369_125463871	3300012971	Tropical Forest Soil	PSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAEITVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS*
Ga0164304_110260271	3300012986	Soil	RTLKSDRAPVVLSKSRNAVNGPSETQAPPAPAPKPKLLDGCEPMVSAIGHSPLAQIAGRCVS*
Ga0132258_109110642	3300015371	Arabidopsis Rhizosphere	PMVNRTLKSDRMPLASTKSRNAVTGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS*
Ga0132258_113550871	3300015371	Arabidopsis Rhizosphere	ATTAAPSLGQNATTVNRTLKSDRMQVTPANSRNAVNGPIEIKAPAAPAPQPRLLDGCEPMVSAIGQSPLAQIAGRCVS*
Ga0132256_1003444501	3300015372	Arabidopsis Rhizosphere	AGQTTLTINRALKSDRMPLVPVKSHNAVNIPAETNAPTGTPAPKPRLLDGCEPMVSAIGQSPLAQIAGRCVS*
Ga0132256_1018196521	3300015372	Arabidopsis Rhizosphere	SDRMPLASTKSRNAVNGPAEITVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS*
Ga0132256_1029167441	3300015372	Arabidopsis Rhizosphere	KSDRMPLVPATTRNAVNGPAETNAPTATPGPEPLLLDGCEPMVSAIGQSPLAQIAGRCVS
Ga0182034_120151311	3300016371	Soil	PSGARTAPMVNRTLKSDRMPLVSTKSRNAVNGPAETNAPPAPAPKPKLLDGCEPVVSAIGHSPLAQIAGRCVS
Ga0182040_111983471	3300016387	Soil	VGLEVSSTTAAPSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVAGRCVS
Ga0182037_104668652	3300016404	Soil	RTAPMVNRTLKSDRMPLASTKSRNAVNGPAETIVPPAPAPKPRLLDGCEPVVSAIGHSPLSQVPGRCVS
Ga0190274_108017541	3300018476	Soil	SATTAAPSAGQTSLTINRTLKSDRMPLVPAITRNAVNGPVETNAPTATPDPKPLLLDGCEPMVSAIGQSPLAQIAGRCVS
Ga0184646_16389612	3300019259	Groundwater Sediment	GLEVSATTAAPSASQTSLTINRTLKSDRMPLVPMNGRNAVNSPVETNAPAVVPASKPRLLDGCEPMVSAIGQSPLAQIAGRCVS
Ga0173479_108159701	3300019362	Soil	NRALKSDRMPLVPVKSHNAVNSPAETNAPTGTPAPKPRLLDGCEPMVSAIGQSPLAQIAGRCVS
Ga0210407_114402641	3300020579	Soil	STTAAPSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0210381_102606591	3300021078	Groundwater Sediment	AGQTTLTINRALKSDRMPLVPVKSHNAVNSPAETTAPTGTPAPKPRLLDGCEPMVSAIGQSPLAQIAGRCVS
Ga0207684_108446931	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MVNRTLKSDRMPLVSTKSRNAVNGPAEMKAPPAPAPKPKLLDGCEPVVSAIGHSPLSQIPGRCVS
Ga0207663_116856751	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	PMVERALKSDRLPLVPMKSRNAIKGPIETNAPAATPAPKPRLLDGCEPMVSAIGQSPLAQVAGRCVS
Ga0207694_105101451	3300025924	Corn Rhizosphere	SDRMPLVPVKSHNAVNSPAETNAPTGTPAPKPRLLDGCEPMVSAIGQSPLAQIAGRCVS
Ga0207687_115566361	3300025927	Miscanthus Rhizosphere	AGQTTLTINRALKSDRMPLVPVKSHNAVNSPAETNAPTGTPAPKPRLLDGCEPMVSAIGQSPLAQIAGRCVS
Ga0207700_117949651	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LKSDRMPLASTKSRNAVNGPAEITVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0207686_113829951	3300025934	Miscanthus Rhizosphere	LTINRTLKSDRMPLVPATTRNAVNGPVETNAPTAAPDPKPLLLDGCEPMVSAIGQSPLAQIAGRCVS
Ga0207640_102825782	3300025981	Corn Rhizosphere	APSAGQTTLTINRALKSDRMPLVPVKSHNAVNSPAETNAPTGTPAPKPRLLDGCEPMVSAIGQSPLAQIAGRCVS
Ga0207676_113269801	3300026095	Switchgrass Rhizosphere	ATTAAPSAGQTTLTINRALKSDRMPLVPVKSHNAVNSPAETNAPTGTPAPKPRLLDGCEPMVSAIGQSPLAQIAGRCVS
Ga0207683_108348052	3300026121	Miscanthus Rhizosphere	LTINRTLKSDRMTLVPAITRNSVNGPVETNAPAATPGPKPLLLDGCEPMVSAIGQSPLAQIAGRCVS
Ga0208995_10085382	3300027388	Forest Soil	TLKSDRMPLAPLKSRNAVNGPVETNAPAATPTSKPRLLDGCEPMVSAIGQSPLAQIAGRCVS
Ga0208984_10211221	3300027546	Forest Soil	SQTSLTINRTLKSDRMPLAPLKSRNAVNGPVETNAPAATPTSKPRLLDGCEPMVSAIGQSPLAQIAGRCVS
Ga0208988_10891311	3300027633	Forest Soil	PSASQTSLTINRTLKSDRMPLAPLKSRNAVNGPVETNAPAATPTSKPRLLDGCEPMVSAIGQSPLAQIAGRCVS
Ga0209799_10364872	3300027654	Tropical Forest Soil	RSAPMVNRTLKSDRMPLVSTKSRNAVNGPAEMTPAPAPAPKPKLLDGCEPVVSAIGHSPLAQIPGRCVS
Ga0209689_12082351	3300027748	Soil	RLPLVSIKSRNAVNGPAEMQPAPAPAPKPRLLDGCEPIVSAIGQTPLAQVAGRCVS
Ga0209283_102086141	3300027875	Vadose Zone Soil	TAPMVNRTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0209590_105569631	3300027882	Vadose Zone Soil	EVSATTAAPSLQRSDPVVNRTLKGDRLPLTPAKSRNAVNGPFEIKAPPKLLDGCEPMVSAIGQSPLAQIAGRCVS
Ga0247828_100931491	3300028587	Soil	LEVSATTAAPSAGQTTLTINRALKSDRMPLVPVKSHNAVNSPAETNAPTGTPAPKPRLLDGCEPMVSAIGQSPLAQIAGRCVS
Ga0307318_101665731	3300028744	Soil	TINRTLKSDRMPLVPMNGRNAVNSPVETNAPAVVPASKPRLLDGCEPMVSAIGQPPLAQIAGRCVS
Ga0307297_100093992	3300028754	Soil	NRTLKSDRMPLIPMNGRNAVNTPVETNAPAVVPASKPRLLDGCEPMVSAIGQPPLAQIAGRCVS
Ga0307282_103330082	3300028784	Soil	GLEFSATTAAPSTDRTATSVNRALKGDRLPLTPGRSRNAVNGPFELKTPPASRPELLDGCEPVVSSIGQSPLAQIAGRCVS
Ga0307299_100051251	3300028793	Soil	RTLKSDRMPLIPMNGRNAVNTPVETNAPAVVPASKPRLLDGCEPMVSAIGQPPLAQIAGRCVS
Ga0307312_107210672	3300028828	Soil	NRTLKSDRMPLVPMNGRNAVNSPVETNAPAVVPASKPRLLDGCEPMVSAIGQSPLAQIAGRCVS
Ga0307314_102168071	3300028872	Soil	TTAAPSTDRTATSVNRALKGDRLPLTPGRSRNAVNGPFELKTPPASRPELLDGCEPVVSSIGQSPLAQIAGRCVS
Ga0308309_113386341	3300028906	Soil	SDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0308203_10302372	3300030829	Soil	ALKSDRMPVVPVKSHNAVNGPAETNAPTGTPVPKPRLLDGCEPMVSAIGQSPLAQIAGRCVS
Ga0318541_104222651	3300031545	Soil	RTAPMVNRTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPKLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0318541_105176011	3300031545	Soil	MVNRTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0318538_100281102	3300031546	Soil	MVNRTLKSDRMPLASTKSRNAVNGPAEITVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0318538_104750421	3300031546	Soil	AAPSLARTAPMVNRTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPKLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0318538_107272881	3300031546	Soil	KSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEAVVSAIGHSPLAQVPGRCVS
Ga0318528_102862892	3300031561	Soil	RTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVAGRCVS
Ga0318573_100247033	3300031564	Soil	IARTAPMVNRTLKSDRMPLASTKSRNAVNGPAEITVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0310915_102258352	3300031573	Soil	KSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0310915_109246402	3300031573	Soil	MVNRTLKSDRMPLVSTKSRNAVNGPAEMTPAPAPAPKPKLLDGCEPVVSAIGHSPLAQIPGRCVS
Ga0318555_101512722	3300031640	Soil	VNRTLKSDRMPLVSTKSRNAVNGPAEMTPAPAPAPKPKLLDGCEPVVSAIGHSPLAQIPGRCVS
Ga0318542_100163571	3300031668	Soil	MVNRTLKSDRMPLVATKSRNAVNGPAEMTPAPAPAPKPKLLDGCEPVVSAIGHSPLAQIPGRCVS
Ga0318542_101540871	3300031668	Soil	KSDRMPLASTKSRNAVNGPAETTVPPAPAPKPKLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0318572_101221152	3300031681	Soil	GLEVSSTTAAPSIARTAPMVNRNLKSDRMPLASAKSRNAVNGPAETIVPPAPAPKPKLLDGCEPVVSAIGHSPLSQVAGRCVS
Ga0318496_105242641	3300031713	Soil	PMVNRALKSDRLPLVSSKSRNAVNGPSGTQIPPAPAPKPRLLDGCEPMVSAIGQSPLAQIPGRCVS
Ga0306917_110922961	3300031719	Soil	LKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0307469_121763172	3300031720	Hardwood Forest Soil	IGLEVSATTAAPSVESAAPVINRAHKGDRLPLIPAKSRNAVNGPVEKAPAPKPRLLDGCEPVVSAIGQSPLAQIPGRCVS
Ga0318493_106309571	3300031723	Soil	LEVSSTTAAPSLARTAPMVNRTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPKLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0306918_100434501	3300031744	Soil	STTAAPSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVAGRCVS
Ga0318494_101024312	3300031751	Soil	KSDRMPLVSTKSRNAVNGPAEMTPAPAPAPKPKLLDGCEPVVSAIGHSPLAQIPGRCVS
Ga0318537_100147163	3300031763	Soil	SDRMPLASTKSRNAVNGPAEITVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0318554_103374811	3300031765	Soil	VGSYLSRGAPMVNRALKSDRLPLVSSKSRNAVNGPSGTQIPPAPAPKPRLLDGCEPMVSAIGQSPLAQIPGRCVS
Ga0318543_104604441	3300031777	Soil	MVNRTLKSDRLPLVSSKSRNAVNGPSGTQIPPAPAPKPRLLDGCEPMVSAIGQSPLAQIPGRCVS
Ga0318543_105557181	3300031777	Soil	LEVSSTTAAPSIARSAPMVNRTLKSDRMPLVSTKSRNAVNGPAEMTPAPAPAPKPKLLDGCEPVVSAIGHSPLAQIPGRCVS
Ga0318498_100749422	3300031778	Soil	SSTTAAPSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAEITVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0318548_101976551	3300031793	Soil	APSGARTAPMVNRTLKSDRMPLVSTKSRNAVNGPAETNAPPAPAPKPKLLDGCEPVVSAIGHSPLAQIAGRCVS
Ga0318548_104920291	3300031793	Soil	RMPLASTKSRNAVNGPAEITIPPAPAPKPRLLDGCEPVVSAIGHSPLAQVAGRCVS
Ga0318523_105694161	3300031798	Soil	GLEVSSTTAAPSIARTAPMVNRTLKSDRMPLASAKSRNAVNGPAETIVPPAPAPKPKLLDGCEPVVSAIGHSPLSQVAGRCVS
Ga0318497_104289911	3300031805	Soil	LEVSSTTAAPSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVAGRCVS
Ga0318568_100309783	3300031819	Soil	NRTLKSDRMPLVSTKSRNAVNGPAEMTPAPAPAPKPKLLDGCEPVVSAIGHSPLAQIPGRCVS
Ga0318511_100640371	3300031845	Soil	AAPSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAEITVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0318495_101254442	3300031860	Soil	TTAAPSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAEITVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0318520_100468972	3300031897	Soil	TLKSDRMPLASTKSRNAVNGPAEITVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCV
Ga0310900_112107341	3300031908	Soil	DRALKSDRLPLVPVKSRNAIKGPIETNAPAATPAPKPRLLDGCEPMVSAIGQSPLAQVAGRCVS
Ga0306921_103328451	3300031912	Soil	KSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVAGRCVS
Ga0310912_101362702	3300031941	Soil	VGLEVSSTTAAPSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0306926_101029761	3300031954	Soil	LKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVAGRCVS
Ga0306926_102432681	3300031954	Soil	LEVSSTTAAPSGARTAPMVNRTLKSDRMPLVSTKSRNAVNGPAETNAPPAPAPKPKLLDGCEPVVSAIGHSPLAQIAGRCVS
Ga0318531_100609611	3300031981	Soil	LEVSSTTAAPSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAEITVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0310906_114669331	3300032013	Soil	LQVSATTAAPSAGQTSLTINRTLKSDRMPLVPATTRNAVNGPVETNAPTATPGPEPLLLDGCEPMVSAIGQSPLAQIAGRCVS
Ga0318507_100370502	3300032025	Soil	LVNRTLKSDRMPLASTKSRNAVNGPAETIVPPAPAPKPRLLDGCEPVVSAIGHSPLSQVPGRCVS
Ga0318559_101193291	3300032039	Soil	MVNRTLKSDRMPLVSTKSRNAVNGPAETNAPPAPAPKPKLLDGCEPVVSAIGHSPLAQIAGRCVS
Ga0318549_101980531	3300032041	Soil	RMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVAGRCVS
Ga0318556_100823231	3300032043	Soil	IAPTAPMVNRNLKSDRMPLASAKSRNAVNGPAETIVPPAPAPKPKLLDGCEPVVSAIGHSPLSQVAGRCVS
Ga0318506_101016951	3300032052	Soil	STTAAPSIARTAPMVNRNLKSDRMPLASAKSRNAVNGPAETIVPPAPAPKPKLLDGCEPVVSAIGHSPLSQVAGRCVS
Ga0318504_104098931	3300032063	Soil	TLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCV
Ga0318513_100403431	3300032065	Soil	RMPLVSTKSRNAVNGPAEMTPAPAPAPKPKLLDGCEPVVSAIGHSPLAQIPGRCVS
Ga0318514_105192531	3300032066	Soil	VNRTLKSDRLPLVSSKSRNAVNGPSGTQIPPAPAPKPRLLDGCEPMVSAIGQSPLAQIPGRCVS
Ga0318553_103384311	3300032068	Soil	VSSTTAAPSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPKLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0306924_114312811	3300032076	Soil	DRMPLASTKSRNAVNGPAEITIPPAPAPKPRLLDGCEPVVSAIGHSPLAQVAGRCVS
Ga0306920_1003974382	3300032261	Soil	RTAPMVNRTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVPGRCVS
Ga0306920_1012893412	3300032261	Soil	TTAAPSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVAGRCVS
Ga0310914_101736382	3300033289	Soil	ALKSDRLPLVSSKSRNAVNGPSGTQIPPAPAPKPRLLDGCEPMVSAIGQSPLAQIPGRCV
Ga0310914_105482182	3300033289	Soil	GLEVSSTTAAPSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVAGRCVS
Ga0318519_103138681	3300033290	Soil	AAPSIARTAPMVNRTLKSDRMPLASTKSRNAVNGPAETTVPPAPAPKPRLLDGCEPVVSAIGHSPLAQVAGRCVS
Ga0310811_108573251	3300033475	Soil	ATTAAPSVGPAAPMVERALKSDRLPLVPVKSRNAIKGPIETNAPAATPAPKPRLLDGCEPMVSAIGQSPLAQVAGRCVS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F050355

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences