Metagenome / Metatranscriptome Family F049969

Basic Information
Family ID	F049969
Family Type	Metagenome / Metatranscriptome
Number of Sequences	146
Average Sequence Length	47 residues
Representative Sequence	VADIQKLNVELDPLPGERVQELIVRTLNVPQAVRERAKLAFGR
Number of Associated Samples	133
Number of Associated Scaffolds	146

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.37 %
% of genes near scaffold ends (potentially truncated)	97.26 %
% of genes from short scaffolds (< 2000 bps)	93.84 %
Associated GOLD sequencing projects	127
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Most Common Taxonomy
Group	Bacteria (84.247 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.384 % of family members)
Environment Ontology (ENVO)	Unclassified (28.082 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.890 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.03% β-sheet: 0.00% Coil/Unstructured: 61.97%
Feature Viewer

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Pfam ID	Name	% Frequency in 146 Family Scaffolds
PF05199	GMC_oxred_C	13.01
PF03401	TctC	8.22
PF03928	HbpS-like	6.85
PF00561	Abhydrolase_1	3.42
PF01436	NHL	2.05
PF01494	FAD_binding_3	1.37
PF02322	Cyt_bd_oxida_II	1.37
PF00398	RrnaAD	0.68
PF00501	AMP-binding	0.68
PF03662	Glyco_hydro_79n	0.68
PF00155	Aminotran_1_2	0.68
PF00440	TetR_N	0.68
PF03480	DctP	0.68
PF15937	PrlF_antitoxin	0.68
PF02371	Transposase_20	0.68
PF10082	BBP2_2	0.68
PF07969	Amidohydro_3	0.68
PF13546	DDE_5	0.68
PF13649	Methyltransf_25	0.68
PF00171	Aldedh	0.68

COG ID	Name	Functional Category	% Frequency in 146 Family Scaffolds
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	13.01
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	8.22
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	2.74
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	1.37
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	1.37
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	1.37
COG1294	Cytochrome bd-type quinol oxidase, subunit 2	Energy production and conversion [C]	1.37
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.68
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	0.68
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.68
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.68
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.68

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.25 %
Unclassified	root	N/A	15.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.25 %
Unclassified	root	N/A	15.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.25 %
Unclassified	root	N/A	15.75 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	54.11 %
Unclassified	root	N/A	15.75 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.42 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.05 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.68 %

Name	Rank	Taxonomy	Distribution
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	25.34 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	17.12 %
Unclassified	root	N/A	15.75 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.74 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.37 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.37 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.68 %

Name	Rank	Taxonomy	Distribution
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	25.34 %
Unclassified	root	N/A	15.75 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.33 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.37 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	1.37 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.68 %

Name	Rank	Taxonomy	Distribution
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	25.34 %
Unclassified	root	N/A	15.75 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	4.11 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.37 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.37 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.37 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.37 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.68 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.68 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.68 %
Kaistiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae	0.68 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.68 %

Name	Rank	Taxonomy	Distribution
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	25.34 %
Unclassified	root	N/A	15.75 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4.11 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.37 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.37 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.37 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.68 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.68 %
Bauldia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia	0.68 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.68 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.68 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.68 %

Name	Rank	Taxonomy	Distribution
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	25.34 %
Unclassified	root	N/A	15.75 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4.11 %
Sinosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sinosporangium	1.37 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.37 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.37 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.68 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.68 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.68 %
Bauldia litoralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → Bauldia litoralis	0.68 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.68 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.68 %

Name	Rank	Taxonomy	Distribution
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	25.34 %
Unclassified	root	N/A	15.75 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4.11 %
Sinosporangium siamense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sinosporangium → Sinosporangium siamense	1.37 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.37 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.37 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.68 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.68 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.68 %
Bauldia litoralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → Bauldia litoralis	0.68 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.68 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.68 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2288313	All Organisms → cellular organisms → Bacteria → Proteobacteria	1732	Open in IMG/M
3300001661\|JGI12053J15887_10404929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	655	Open in IMG/M
3300002568\|C688J35102_118859678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	605	Open in IMG/M
3300004145\|Ga0055489_10162458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	681	Open in IMG/M
3300004153\|Ga0063455_100194978	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300004268\|Ga0066398_10230944	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	500	Open in IMG/M
3300005147\|Ga0066821_1026001	Not Available	519	Open in IMG/M
3300005328\|Ga0070676_10770297	Not Available	708	Open in IMG/M
3300005332\|Ga0066388_101624818	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1139	Open in IMG/M
3300005332\|Ga0066388_102334502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	969	Open in IMG/M
3300005332\|Ga0066388_103451124	Not Available	807	Open in IMG/M
3300005356\|Ga0070674_101166954	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	682	Open in IMG/M
3300005366\|Ga0070659_101258046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	655	Open in IMG/M
3300005456\|Ga0070678_100730934	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300005459\|Ga0068867_100742529	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300005545\|Ga0070695_100925143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	705	Open in IMG/M
3300005557\|Ga0066704_10517577	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	783	Open in IMG/M
3300005563\|Ga0068855_100405022	All Organisms → cellular organisms → Bacteria → Proteobacteria	1494	Open in IMG/M
3300005586\|Ga0066691_10944600	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	507	Open in IMG/M
3300005618\|Ga0068864_102395547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → Bauldia litoralis	534	Open in IMG/M
3300005713\|Ga0066905_101822073	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	562	Open in IMG/M
3300005764\|Ga0066903_109012235	All Organisms → cellular organisms → Bacteria → Proteobacteria	505	Open in IMG/M
3300005842\|Ga0068858_100077045	All Organisms → cellular organisms → Bacteria → Proteobacteria	3097	Open in IMG/M
3300006038\|Ga0075365_10097718	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2008	Open in IMG/M
3300006038\|Ga0075365_10504053	Not Available	855	Open in IMG/M
3300006049\|Ga0075417_10443199	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	647	Open in IMG/M
3300006052\|Ga0075029_100768371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	654	Open in IMG/M
3300006163\|Ga0070715_10278661	All Organisms → cellular organisms → Bacteria → Proteobacteria	885	Open in IMG/M
3300006172\|Ga0075018_10819500	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	512	Open in IMG/M
3300006845\|Ga0075421_102135529	All Organisms → cellular organisms → Bacteria → Proteobacteria	593	Open in IMG/M
3300006854\|Ga0075425_102145707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	623	Open in IMG/M
3300006854\|Ga0075425_102863147	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300006871\|Ga0075434_101315499	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300006914\|Ga0075436_100411110	All Organisms → cellular organisms → Bacteria → Proteobacteria	981	Open in IMG/M
3300007004\|Ga0079218_13996873	All Organisms → cellular organisms → Bacteria → Proteobacteria	501	Open in IMG/M
3300009098\|Ga0105245_12286199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594	Open in IMG/M
3300009100\|Ga0075418_10302506	All Organisms → cellular organisms → Bacteria	1705	Open in IMG/M
3300009100\|Ga0075418_10497853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1308	Open in IMG/M
3300009100\|Ga0075418_12541932	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300009137\|Ga0066709_101847234	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300009143\|Ga0099792_11128175	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	529	Open in IMG/M
3300009147\|Ga0114129_13085086	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	545	Open in IMG/M
3300009153\|Ga0105094_10696107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	595	Open in IMG/M
3300009156\|Ga0111538_12974663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	592	Open in IMG/M
3300009162\|Ga0075423_11822839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	656	Open in IMG/M
3300009174\|Ga0105241_10658307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	952	Open in IMG/M
3300009176\|Ga0105242_11163311	All Organisms → cellular organisms → Bacteria → Proteobacteria	789	Open in IMG/M
3300009545\|Ga0105237_10374464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1428	Open in IMG/M
3300009792\|Ga0126374_11374648	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	574	Open in IMG/M
3300010046\|Ga0126384_10736370	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	877	Open in IMG/M
3300010047\|Ga0126382_10113535	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1780	Open in IMG/M
3300010047\|Ga0126382_12279442	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	523	Open in IMG/M
3300010048\|Ga0126373_12701687	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300010061\|Ga0127462_188030	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	547	Open in IMG/M
3300010071\|Ga0127477_131485	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	605	Open in IMG/M
3300010360\|Ga0126372_13010205	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	523	Open in IMG/M
3300010362\|Ga0126377_10124402	All Organisms → cellular organisms → Bacteria	2387	Open in IMG/M
3300010362\|Ga0126377_10285978	All Organisms → cellular organisms → Bacteria	1620	Open in IMG/M
3300010362\|Ga0126377_10330834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1513	Open in IMG/M
3300010376\|Ga0126381_101699963	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	911	Open in IMG/M
3300010398\|Ga0126383_10120987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2385	Open in IMG/M
3300010400\|Ga0134122_10266585	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1454	Open in IMG/M
3300010401\|Ga0134121_10378317	Not Available	1273	Open in IMG/M
3300011270\|Ga0137391_10620377	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300012205\|Ga0137362_11424611	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	579	Open in IMG/M
3300012206\|Ga0137380_10330261	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1362	Open in IMG/M
3300012208\|Ga0137376_11026247	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	706	Open in IMG/M
3300012376\|Ga0134032_1022511	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	530	Open in IMG/M
3300012507\|Ga0157342_1034556	Not Available	652	Open in IMG/M
3300012582\|Ga0137358_10970123	Not Available	552	Open in IMG/M
3300012906\|Ga0157295_10399451	Not Available	512	Open in IMG/M
3300012917\|Ga0137395_10855403	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300012924\|Ga0137413_10240325	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1238	Open in IMG/M
3300012925\|Ga0137419_11164152	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	644	Open in IMG/M
3300012930\|Ga0137407_10806414	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	887	Open in IMG/M
3300012944\|Ga0137410_11675694	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300012948\|Ga0126375_10172532	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1389	Open in IMG/M
3300012957\|Ga0164303_10670809	Not Available	694	Open in IMG/M
3300012971\|Ga0126369_10639697	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1137	Open in IMG/M
3300012971\|Ga0126369_10758035	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1051	Open in IMG/M
3300012985\|Ga0164308_11900144	Not Available	555	Open in IMG/M
3300012988\|Ga0164306_11338080	Not Available	607	Open in IMG/M
3300012989\|Ga0164305_10450819	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	999	Open in IMG/M
3300014272\|Ga0075327_1055003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1181	Open in IMG/M
3300015077\|Ga0173483_10796163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	545	Open in IMG/M
3300015245\|Ga0137409_10151183	All Organisms → cellular organisms → Bacteria → Proteobacteria	2124	Open in IMG/M
3300015264\|Ga0137403_10398028	All Organisms → cellular organisms → Bacteria → Acidobacteria	1258	Open in IMG/M
3300015372\|Ga0132256_101724604	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	735	Open in IMG/M
3300016294\|Ga0182041_10938358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	780	Open in IMG/M
3300016404\|Ga0182037_12033795	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300018073\|Ga0184624_10015830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2729	Open in IMG/M
3300018078\|Ga0184612_10035462	All Organisms → cellular organisms → Bacteria	2586	Open in IMG/M
3300018432\|Ga0190275_12605422	All Organisms → cellular organisms → Bacteria → Proteobacteria	583	Open in IMG/M
3300018433\|Ga0066667_10234428	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
3300018433\|Ga0066667_11057259	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300018469\|Ga0190270_11720238	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300021067\|Ga0196978_1055001	Not Available	749	Open in IMG/M
3300021363\|Ga0193699_10264699	Not Available	716	Open in IMG/M
3300021404\|Ga0210389_11028963	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300021432\|Ga0210384_10202590	All Organisms → cellular organisms → Bacteria	1784	Open in IMG/M
3300021475\|Ga0210392_10646900	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300021559\|Ga0210409_10875719	All Organisms → cellular organisms → Bacteria → Proteobacteria	772	Open in IMG/M
3300025905\|Ga0207685_10681224	All Organisms → cellular organisms → Bacteria → Proteobacteria	558	Open in IMG/M
3300025908\|Ga0207643_10516391	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300025937\|Ga0207669_11037267	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	690	Open in IMG/M
3300025944\|Ga0207661_11569278	Not Available	603	Open in IMG/M
3300025945\|Ga0207679_11593909	Not Available	598	Open in IMG/M
3300026111\|Ga0208291_1025936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1076	Open in IMG/M
3300026467\|Ga0257154_1078164	Not Available	527	Open in IMG/M
3300027288\|Ga0208525_1005857	All Organisms → cellular organisms → Bacteria → Proteobacteria	1291	Open in IMG/M
3300027324\|Ga0209845_1043539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	711	Open in IMG/M
3300027862\|Ga0209701_10510207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	652	Open in IMG/M
3300027873\|Ga0209814_10335883	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	660	Open in IMG/M
3300027882\|Ga0209590_10995992	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300027907\|Ga0207428_11018161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	581	Open in IMG/M
3300028047\|Ga0209526_10604954	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300028379\|Ga0268266_11382715	Not Available	679	Open in IMG/M
3300028380\|Ga0268265_10572505	Not Available	1075	Open in IMG/M
3300028712\|Ga0307285_10007881	All Organisms → cellular organisms → Bacteria	2232	Open in IMG/M
3300028715\|Ga0307313_10216232	Not Available	595	Open in IMG/M
3300028720\|Ga0307317_10067739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1161	Open in IMG/M
3300028755\|Ga0307316_10009091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sinosporangium → Sinosporangium siamense	3069	Open in IMG/M
3300028782\|Ga0307306_10028276	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300028790\|Ga0307283_10129854	Not Available	682	Open in IMG/M
3300028802\|Ga0307503_10286001	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300028810\|Ga0307294_10050686	All Organisms → cellular organisms → Bacteria	1207	Open in IMG/M
3300028885\|Ga0307304_10037120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sinosporangium → Sinosporangium siamense	1746	Open in IMG/M
3300028885\|Ga0307304_10120979	All Organisms → cellular organisms → Bacteria	1066	Open in IMG/M
3300028889\|Ga0247827_10210066	Not Available	1082	Open in IMG/M
3300030829\|Ga0308203_1047280	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	644	Open in IMG/M
3300031152\|Ga0307501_10252756	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	525	Open in IMG/M
3300031538\|Ga0310888_10858586	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	565	Open in IMG/M
3300031720\|Ga0307469_11868374	Not Available	581	Open in IMG/M
3300031769\|Ga0318526_10054137	All Organisms → cellular organisms → Bacteria	1537	Open in IMG/M
3300031778\|Ga0318498_10088732	Not Available	1398	Open in IMG/M
3300031858\|Ga0310892_10317686	All Organisms → cellular organisms → Bacteria → Proteobacteria	988	Open in IMG/M
3300031896\|Ga0318551_10236691	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300031912\|Ga0306921_12571848	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300031942\|Ga0310916_10393638	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
3300031954\|Ga0306926_12658593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	545	Open in IMG/M
3300032059\|Ga0318533_11452958	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	501	Open in IMG/M
3300032075\|Ga0310890_11742429	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	517	Open in IMG/M
3300032091\|Ga0318577_10475672	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300032174\|Ga0307470_11457317	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	567	Open in IMG/M
3300032261\|Ga0306920_102539897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	704	Open in IMG/M
3300032261\|Ga0306920_102585641	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.03%
Host-Associated	Host-Associated	23.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.92%
Plants	Host-Associated → Plants	23.97%
Aquatic	Environmental → Aquatic	4.11%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.12%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.48%
Sediment	Environmental → Aquatic → Sediment	2.74%
Roots	Host-Associated → Plants → Roots	1.37%
Freshwater	Environmental → Aquatic → Freshwater	0.68%
Marine	Environmental → Aquatic → Marine	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.33%
Loam	Environmental → Terrestrial → Soil → Loam	9.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.37%
Sand	Environmental → Terrestrial → Soil → Sand	1.37%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.37%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.68%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.68%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.04%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.74%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.74%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.37%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.37%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.37%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.68%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.68%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.68%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.38%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.59%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.11%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.05%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.05%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.05%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.05%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.05%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.37%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.37%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.37%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.37%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.37%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.37%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.37%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.37%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.37%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.37%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.37%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.37%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.37%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.68%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.68%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.68%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.68%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.68%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.68%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.68%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004145	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005147	Soil and rhizosphere microbial communities from Laval, Canada - mgLMC	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010061	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010071	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012376	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014272	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300021067	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20-13C	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026111	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1 (SPAdes)	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental	Open in IMG/M
3300027324	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F049969

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_22883131	3300000033	Soil	IRKVDVELEPLPGERVQELITRTLAXPASVRERAKVAFGR*
JGI12053J15887_104049292	3300001661	Forest Soil	GFDAMVKDPEFLADIQKINVELDPLPGAAVAQMVAQTLNVPAAVRERALNAFGR*
C688J35102_1188596781	3300002568	Soil	RVGMLRDAFQKMVKDPEFVAELQRTNVELDPLPGAQVEELVVRTLNVPATVRDRAKLAFGR*
Ga0055489_101624581	3300004145	Natural And Restored Wetlands	DSDFVADIKKVNVELDPLPGEGVQALTTKTLNVPASVRERARVAFGR*
Ga0063455_1001949781	3300004153	Soil	GALRDAFQKMVKDPEFVAELQRTNVELDPLPGAQVEELVVRTLNVPATVRDRAKLAFGR*
Ga0066398_102309442	3300004268	Tropical Forest Soil	MVNDANFIADIRRLEVELDPLPGERVQELVVRTLNVPSAVRERAKLAFGR*
Ga0066821_10260011	3300005147	Soil	DFIADLQRTNVELEPLPGAEVEQLVVRTLNVPATVRDRAKLAFGR*
Ga0070676_107702971	3300005328	Miscanthus Rhizosphere	AALRDAFQKMVRDPEFVADLQRTDVELDPLPGAQVEALVVRTLNVPAAVRDRAKLAFGR*
Ga0066388_1016248183	3300005332	Tropical Forest Soil	VADINKVNVELDPLPGERVQELITRTLAVPASVRERAKVAFGR*
Ga0066388_1023345021	3300005332	Tropical Forest Soil	DIQKLNVELDPLPGAALAQLVEKALSVPASVRQRAVEAFGR*
Ga0066388_1034511242	3300005332	Tropical Forest Soil	DPEFVADLQRTDVELSPLSGEQVAQLVARTLAVPAAIRERAKLAFGR*
Ga0070674_1011669542	3300005356	Miscanthus Rhizosphere	ADIKKVNVELDPLPGERVQELITRTLAVPASVRERAKVAFGR*
Ga0070659_1012580462	3300005366	Corn Rhizosphere	LQRTNVELDPLPGAEVEQMVIRTLSVPATVRDRAKLAFGR*
Ga0070678_1007309341	3300005456	Miscanthus Rhizosphere	RVGALRDAFQKMVKDPDFVADLQRTNVELDPLPGTQVEELVIRTLNVPATVRDRAKLAFGR*
Ga0068867_1007425292	3300005459	Miscanthus Rhizosphere	FIADLQRTNVELEPLPGAEVEQLVVRTLNVPATVRDRAKLAFGR*
Ga0070695_1009251432	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VLREAFNAMVKDPDFVADIKKVNVELDPLPGERVQELITRTLAVPASVRERAKVAFGR*
Ga0066704_105175773	3300005557	Soil	KTNVELDPLPGERVQELIVRTLNVPAAVRERAKLGFGR*
Ga0068855_1004050222	3300005563	Corn Rhizosphere	DAFQKTVKDPEFVAELQRTNVELDPLPGAAVEQLVVRTLNVPATVRDRAKLAFGR*
Ga0066691_109446001	3300005586	Soil	EAFNAMVRDPEFIADIQKTNVELDPLPGERLQELTVHTLNVPEAVRERAKLAFGR*
Ga0068864_1023955471	3300005618	Switchgrass Rhizosphere	VDALRDAFQNMVKDPEFVADLRRTNVELDPLPGAEVERMVVRTLNVPAAVRDRAKLAFGR
Ga0066905_1018220731	3300005713	Tropical Forest Soil	AFQAMVKDPEFVADIQRLNVELDPLPGEQVGELVIRTLNVPAAVRKRAKLAFGR*
Ga0066903_1090122352	3300005764	Tropical Forest Soil	REGFDAMVKDPDFVADIARLNVELDPLSGAELAQRIAHTLALPAAVRERAKHAFGR*
Ga0068858_1000770453	3300005842	Switchgrass Rhizosphere	VKDPEFVAELQRTNVELDPLPGAAVEQLVVRTLNVPATVRDRAKLAFGR*
Ga0075365_100977181	3300006038	Populus Endosphere	NVELEPLSGEAVQEMIVRTLNVPQAVRDRAKLAFGR*
Ga0075365_105040533	3300006038	Populus Endosphere	DPEFVADLQRTNVELDPLPGAQVQELVVRTLNVPATVRDRAKLAFGR*
Ga0075417_104431991	3300006049	Populus Rhizosphere	LNVELEPLAGEQVGELVIRTLNVPAAVRERAKLAFGR*
Ga0075029_1007683712	3300006052	Watersheds	GFDAMVKDPDFVADIRKINVELDPLPGAAVAQLVERTLNVPAAVRERAINAFGR*
Ga0070715_102786612	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	TVKDPEFVAELQRTNVELDPLPGAAVEQLVVRTLNVPATVRDRAKLAFGR*
Ga0075018_108195002	3300006172	Watersheds	DPDFVADIQKLNVELDPLPGAAVAQLVARTLDVPAAVRERAIHAFGR*
Ga0075421_1021355291	3300006845	Populus Rhizosphere	FVADIRKLNVELDPMPGERLQELITRTLNVPVSVRERAKVAFGR*
Ga0075425_1021457072	3300006854	Populus Rhizosphere	LMIKDPEFLADIQKLNVELDPLPGEAVQELIVRTLNVPQAVRERAKLAFGR*
Ga0075425_1028631472	3300006854	Populus Rhizosphere	VDLEPLSGEQLEGLVDRALNVPPAVRERAKLAFGR*
Ga0075434_1013154991	3300006871	Populus Rhizosphere	DLQRTNVELDPLPGAEVERLVVRTLNVPATVRDRAKLAFGR*
Ga0075436_1004111101	3300006914	Populus Rhizosphere	KDPEFIADIQKTNVELEPLPGDKLQDFVVRTLNVPPAVRERAKNAFGR*
Ga0079218_139968731	3300007004	Agricultural Soil	ELDPMPGERLQELIVRTLNAPASVRERAQVAFGR*
Ga0105245_122861992	3300009098	Miscanthus Rhizosphere	ELDPLPGAQVQELVVGTLNVPATVRDRAKLAFGR*
Ga0075418_103025063	3300009100	Populus Rhizosphere	ERVQALRSAFVTMVKDPEFVADIQRLNVELDPLPGEQVGELVIRTLNVPAAVRERAKLAFGR*
Ga0075418_104978532	3300009100	Populus Rhizosphere	LRTAFQAMAKDPDFVAEIQRLSVELDPLPGEHLERLVAQTLNTPAAVRERAKAAFGR*
Ga0075418_125419322	3300009100	Populus Rhizosphere	RALCDAFEAMVRDPEFVGDARRLNLELDPLPGERVAELIAQTLNIPVAVRERAKRAFGR*
Ga0066709_1018472342	3300009137	Grasslands Soil	MRNLDVELDPLSGDEVAKLVARTLDVSPSVRERAKLAFGR*
Ga0099792_111281752	3300009143	Vadose Zone Soil	EAFNLMVKDPEFLADIAKLNVELDPLTGEAVQDLIVRTLNVPPAVRERAKLAFGR*
Ga0114129_130850862	3300009147	Populus Rhizosphere	AFDAMVRDPEFVADIQKTNVELDPLPGDKLQQFVERTLNVPAAVRERAKVAFGR*
Ga0105094_106961071	3300009153	Freshwater Sediment	VKDPEFVADIKKLNVELDPLPGDGVQALIARTLNVPASVKERAKVAFGR*
Ga0111538_129746631	3300009156	Populus Rhizosphere	NVELDPLSGTQLAERIARTLAVPAAVRERAKLAFGR*
Ga0075423_118228391	3300009162	Populus Rhizosphere	LRDAFKAMVKDPDFVADINKLNIELDPLPGERVQELITRTLAVPASVRERAKVAFGR*
Ga0105241_106583071	3300009174	Corn Rhizosphere	ELQRTNVELDPLPGAAVEQLVVRTLNVPATVRDRAKLAFGR*
Ga0105242_111633112	3300009176	Miscanthus Rhizosphere	DPDFIADLQRTNVELEPLPGAEVEQLVVRTLNVPATVRDRAKLAFGR*
Ga0105237_103744641	3300009545	Corn Rhizosphere	RTNVDLEPLPGAEVEQMVIRTLSVPATVRDRAKLAFGR*
Ga0126374_113746481	3300009792	Tropical Forest Soil	QRLNVELDPLPGERVGELVVRTLNVPAAVRERAKLAFGR*
Ga0126384_107363701	3300010046	Tropical Forest Soil	VELDPLPGERVQELVVRTLNVPPAVRERAKLAFGR*
Ga0126382_101135354	3300010047	Tropical Forest Soil	VADIQKLNVELDPLPGERVQELIVRTLNVPQAVRERAKLAFGR*
Ga0126382_122794422	3300010047	Tropical Forest Soil	DVQKLNVELDPLPGERVQELIVRTLNVPPAVRERAKLAFGR*
Ga0126373_127016872	3300010048	Tropical Forest Soil	ALCEGFDAMVKDADFLADVRKLDVELDPLPGAAVAQLIEKTLSVPAAVRERAINAFGR*
Ga0127462_1880301	3300010061	Grasslands Soil	DIQKLNVELEPLPGERVQELIVRTLNVPQAVRERAKLAFGR*
Ga0127477_1314851	3300010071	Grasslands Soil	QRLNVELEPLPGERVHELIVRTLNVPQAVRERAKLAFGR*
Ga0126372_130102051	3300010360	Tropical Forest Soil	EFLADIQKLNVELDPLPGEAVQELIVRTLNVPQAVRERAKLAFGR*
Ga0126377_101244021	3300010362	Tropical Forest Soil	RDAFNAMVKDTDFIADIQKLNVELDPLPGQRVQELIARTLNVPRAVRERARVAFGR*
Ga0126377_102859784	3300010362	Tropical Forest Soil	LEVELDPLPGERVQELVVRTLNVPPAVRERAKLAFGR*
Ga0126377_103308344	3300010362	Tropical Forest Soil	VLRDAFDAMVRDSDFVADIRKLNVELEPLSGDKVQALVVRTLNIPDTVRERAKVAFGR*
Ga0126381_1016999631	3300010376	Tropical Forest Soil	AFNEMVKDADFIADIRKLEVELDPLPGERVQELVVRTLKVPPAVRERAKLAFGR*
Ga0126383_101209872	3300010398	Tropical Forest Soil	VELEPLSGEQLEQLVRRALNIPAAVRERAKLAFGR*
Ga0134122_102665853	3300010400	Terrestrial Soil	AMVKDPDFIADIQKLNVELEPMPGERVQELIVRTLNVPQAVRERAKLAFGR*
Ga0134121_103783171	3300010401	Terrestrial Soil	KDPEFVAELQRTNVELDPLPGAAVEQLVVRTLNVPATVRDRAKLAFGR*
Ga0137391_106203771	3300011270	Vadose Zone Soil	DVELDPLSGDEVAKLVARTLDVSPSVRERAKLAFGR*
Ga0137362_114246111	3300012205	Vadose Zone Soil	MVKDPDFIADIQKLNVELEPLPGERVQELIVQTLNVPPAVRERAKLAFGR*
Ga0137380_103302614	3300012206	Vadose Zone Soil	IADIQKTNVELDPLPGERLQELTVHTLNVPEAVRERAKLAFGR*
Ga0137376_110262473	3300012208	Vadose Zone Soil	AMVRDREFIADVHKTNVELDPLPGERVQELIVRTLDVPAAVRERAKLAFGR*
Ga0134032_10225111	3300012376	Grasslands Soil	KDPDFLADIQKLNVELEPLPGERVQELIVRTLNVPQAVRERAKLAFGR*
Ga0157342_10345562	3300012507	Arabidopsis Rhizosphere	VAELQRTNVELDPLPGAAVEQLVVRTLNVPATVRDRAKLAFGR*
Ga0137358_109701232	3300012582	Vadose Zone Soil	ELEPLPGERVQELIVQTLNVPPAVRERAKLAFGR*
Ga0157295_103994512	3300012906	Soil	FQAMVRDPEFVADLQRTNVELDPLPGAEVERLVIRTLNVPATVRDRAKLAFGR*
Ga0137395_108554031	3300012917	Vadose Zone Soil	KALRDAFNLMVRDREFIADIQKLNVELDPLPGQAVQDLILRTLSVPQSVRERAKLAFGR*
Ga0137413_102403251	3300012924	Vadose Zone Soil	IAKLNVELDPLTGEAVQDLIVRTLNVPPAVRERAKLAFGR*
Ga0137419_111641522	3300012925	Vadose Zone Soil	AFNAMVKDPDFIADIQKLNVELEPLPGERVQELIVRTLNVPQAVRERAKLAFGR*
Ga0137407_108064141	3300012930	Vadose Zone Soil	ELDPLPGERVQELIARTLSVPQAVRERAKLAFGR*
Ga0137410_116756942	3300012944	Vadose Zone Soil	QRLNVELDPLPGQAVQDLIVRTLNAPQSVRDRAKLAFGR*
Ga0126375_101725321	3300012948	Tropical Forest Soil	TDFIADIQKLNVELDPLPGERVHDLIVRTLNVPQAVRDRAKLAFGR*
Ga0164303_106708091	3300012957	Soil	TNVELDPLPGAQVEQLVIRTLSVPATVRDRAKLAFGR*
Ga0126369_106396971	3300012971	Tropical Forest Soil	KLNVELEPLPGERVQELIVRTLNVPQAVRERAKLAFGR*
Ga0126369_107580351	3300012971	Tropical Forest Soil	MNVELDPLPGEQVTQLAVRALAVPTAVRERAKSAFGR*
Ga0164308_119001441	3300012985	Soil	DLQRTNVELDPLPGAQVEQMVIRTLSVPATVRDRAKLAFGR*
Ga0164306_113380802	3300012988	Soil	DLQRTNVELEPLPGAEVEQLVVRTLNVPATVRDRAKLAFGR*
Ga0164305_104508191	3300012989	Soil	ELDPLPGAAVEQLVIRTLNVPATVRDRAKLAFGR*
Ga0075327_10550031	3300014272	Natural And Restored Wetlands	NVELDPLPGDGVQALITQTLNVPASVRERARVAFGR*
Ga0173483_107961632	3300015077	Soil	FQKMVRDPEFVADLQRTDVELDPLPGAQVEALVVRTLNVPAAVRDRAKLAFGR*
Ga0137409_101511833	3300015245	Vadose Zone Soil	FNLMVRDREFIADIQKLNVELDPLPGQAVQDLILRTLSVPQSVRERAKLAFGR*
Ga0137403_103980282	3300015264	Vadose Zone Soil	ADIQKLNVELDPLPGQAVQDLILRTLSVPQSVRERAKLAFGR*
Ga0132256_1017246041	3300015372	Arabidopsis Rhizosphere	LADIQKLNVELDPLPGEAVQELIVRTLNVPQAVRERAKLAFGR*
Ga0182041_109383581	3300016294	Soil	KLDIDLEPLPGEALAELIVRTLNVPQAVRERAKLAFGR
Ga0182037_120337952	3300016404	Soil	LADIRKLDIDLEPLPGAALAELIVRTLNVPQAVRERAKLAFGR
Ga0184624_100158304	3300018073	Groundwater Sediment	LQRTNVELEPLPGAEVEQLVVRTLNVPATVRDRAKLAFGR
Ga0184612_100354621	3300018078	Groundwater Sediment	IADIQKLNVELDPLPGERVQDLIVRTLNVPQAVRERAKLAFGR
Ga0190275_126054221	3300018432	Soil	NVELDPLSGERVQELITRTLAVPAAVRERAKVAFGR
Ga0066667_102344282	3300018433	Grasslands Soil	LMVRDPEFIADIQKLNVELDPLSGEAVQELIARTLNVPQSVRERAKLAFGR
Ga0066667_110572593	3300018433	Grasslands Soil	DPEFLADVHKLDVELDPLPGEAVAEMIVRTLNVPQAVRERAKLAFGR
Ga0190270_117202382	3300018469	Soil	NVELDPLTGERLQDLIATTLDVPASVRERAKVAFGR
Ga0196978_10550011	3300021067	Soil	DIKKLNVELAPLSGAKVQELISRTLAVPASVRERAMVAFGR
Ga0193699_102646991	3300021363	Soil	MSPLGLADLQRTNVELEPLPGAELEQLVIRTLNVPATVRDRAKLAFGR
Ga0210389_110289631	3300021404	Soil	VQDPEFIADVRKLDIELDPLPGATVAQLVAQTLAVPAAVRERALNAFGR
Ga0210384_102025904	3300021432	Soil	QKINVELDPLPGAAVAQLVARTLDVPAAVRERAIAAFGR
Ga0210392_106469002	3300021475	Soil	INVELDPLPGAGVAQLVAQTLDVPPAVRERAVNAFGR
Ga0210409_108757192	3300021559	Soil	AMVKDAEFVADVRKIDVELDPLPGAAVAQLVAQTLAVPAAVRERAVNAFGR
Ga0207685_106812241	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	TVKDPEFVAELQRTNVELDPLPGAAVEQLVVRTLNVPATVRDRAKLAFGR
Ga0207643_105163911	3300025908	Miscanthus Rhizosphere	QQHLHAVAHRQGERVGALRDAFQKMVKDPEFVADLQRTDVELDSLPGAQVEALVVRTLNVPAAVRDRAKLAFGR
Ga0207669_110372672	3300025937	Miscanthus Rhizosphere	FVADIKKVNVELDPLPGERVQELITRTLAVPASVRERAKVAFGR
Ga0207661_115692782	3300025944	Corn Rhizosphere	DLQRTNVELDPLPGAQVEALVVRTLNVPAAVRDRAKLAFGR
Ga0207679_115939091	3300025945	Corn Rhizosphere	VKDPEFVADLQRTNVELDPLPGAEVERLVIRTLNVPATVRDRAKLAFGR
Ga0208291_10259361	3300026111	Natural And Restored Wetlands	NVELDPLPGDGVQALITQTLNVPASVRERARVAFGR
Ga0257154_10781641	3300026467	Soil	RVQALREGFDAMVKDAEFVADIRKINVELEPLSGAAIAQLVAQTLNVPAAVRERAISAFG
Ga0208525_10058572	3300027288	Soil	FQKTVKDPEFVAELQRTNVELDPLPGAAVEQLVVRTLNVPATVRDRAKLAFGR
Ga0209845_10435392	3300027324	Groundwater Sand	AFDAMVKDPEFVADIRKLNVELEPLSGDKVQELAVRTLNIPDAVRERAKVAFGR
Ga0209701_105102071	3300027862	Vadose Zone Soil	MIKDPDFLSDLQKLDVELDPLPGEQVAKLVAQTLDVPPAVRERAKLAFGR
Ga0209814_103358831	3300027873	Populus Rhizosphere	LNVELEPLAGEQVGELVIRTLNVPAAVRERAKLAFGR
Ga0209590_109959921	3300027882	Vadose Zone Soil	ADMRNLDVELDPLSGDEVAKLVARTLDVSPSVRERAKLAFGR
Ga0207428_110181612	3300027907	Populus Rhizosphere	DAFQAMVKDPEFTADIGRLNVELDPLSGTQLAERIARTLAVPAAVRDRAKLAFGR
Ga0209526_106049542	3300028047	Forest Soil	GIAAARVQALREGFDAMVKDAEFVADVRKIDVELDPLPGAAVARLVEQTLTVPAAVRERAINAFGR
Ga0268266_113827151	3300028379	Switchgrass Rhizosphere	PEFVADLQRTDVELDSLPGAQVEALVVRTLNVPAAVRDRAKLAFGR
Ga0268265_105725051	3300028380	Switchgrass Rhizosphere	RTNVELEPLPGAEVEQLVIRTLSVPATVRDRAKLAFGR
Ga0307285_100078811	3300028712	Soil	VELEPLPGTEVEQLVIRTLNVPATVRDRAKLAFGR
Ga0307313_102162321	3300028715	Soil	QAMVKDPEFIADLQRTNVELEPLPGAEVEQLVIRTLNVPATVRDRAKLAFGR
Ga0307317_100677392	3300028720	Soil	GALRDAFQKMVKDPEFVAELQRTNVELDPLPGAQVEELVVRTLNVPATVRDRAKLAFGR
Ga0307316_100090913	3300028755	Soil	ALRDAFQKMVKDPEFVAELQRTNVELDPLPGAQVEELVVRTLNVPATVRDRAKLAFGR
Ga0307306_100282761	3300028782	Soil	DAFQAMVKDPEFVAELQRTDVELDPLPGAAVEQLVVRTLNVPATVRDRAKLAFGR
Ga0307283_101298542	3300028790	Soil	MVKDPEFIADLQRTNVELEPLPGTEVEQLVIRTLNVPATVRDRAKLAFGR
Ga0307503_102860012	3300028802	Soil	MNVDLEPLPGEAVAQLAARALAVPAAVRERAKAAFGR
Ga0307294_100506862	3300028810	Soil	TDPEFVAELQRTDVELDPLPGAAVEQLVVRTLNVPATVRDRAKLAFGR
Ga0307304_100371201	3300028885	Soil	VGALRDAFQKMVKDPEFVAELQRTNVELDPLPGAQVEELVVRTLNVPATVRDRAKLAFGR
Ga0307304_101209792	3300028885	Soil	NVELEPLPGTEVEQLVIRTLNVPATVRDRAKLAFGR
Ga0247827_102100661	3300028889	Soil	ADLQRTNVELDPLPGAQVQELVVRTLNVPATVRDRAKLAFGR
Ga0308203_10472801	3300030829	Soil	PDFIADIQKLNVDLEPLPGERVQELIARTLNVPPAVRERAKLAFGR
Ga0307501_102527561	3300031152	Soil	LNVDLEPLPGERVQELIVRTLNVPQAVRERAKLAFGR
Ga0310888_108585861	3300031538	Soil	VELDPLPGERVQELITRTLAVPDSVRERAKVAFGR
Ga0307469_118683742	3300031720	Hardwood Forest Soil	VVDPEFVADLQRTDVELSPLPGEQVAELAARTLSVPAAVRERAKLAFGR
Ga0318526_100541372	3300031769	Soil	VKDADFLADVRKLDVELDPLPGAAVAQLIERTLSVPAAVRERAINAFGR
Ga0318498_100887321	3300031778	Soil	LDVELDPLPGAAVAQLIEKTLSVPAAVRERAINAFGR
Ga0310892_103176863	3300031858	Soil	LNIELDPLPGERVQELITRTLAAPASVRERAKVAFGR
Ga0318551_102366912	3300031896	Soil	NRVAMLREALRAMVADPEFLADIHKLDVDLEPLPGEALAELIVRTLNVPQAVRERAKLAFGR
Ga0306921_125718481	3300031912	Soil	RLAALRAGFDAMVKDADFIADVGKLDVELDPLPGAAVAQLIEKTLSVPAAVRERAINAFG
Ga0310916_103936381	3300031942	Soil	EALRATVADPEFLADIRKLDIDLEPLPGEALAELIVRTLNVPQAVRERAKLAFGR
Ga0306926_126585931	3300031954	Soil	LDVELDPLPGAAVAQLIERTLSVPAAVRERAINAFGR
Ga0318533_114529581	3300032059	Soil	RKLDIDLEPLPGEALAELIVRTLNVPQAVRERAKLAFGR
Ga0310890_117424291	3300032075	Soil	NAMVKDPEFVGDIKKVNVELDPLPGERVQELITRTLAVPDSVRERAKVAFGR
Ga0318577_104756721	3300032091	Soil	AMLREALRATVADPEFLADIRKLDIDLEPLPGEALAELIVRTLNVPQAVRERAKLAFGR
Ga0307470_114573172	3300032174	Hardwood Forest Soil	KLNVELEPLPGERVQELIVRTLNVPQAVRERAKLAFGR
Ga0306920_1025398972	3300032261	Soil	PEFIADVRKINVELDPLPGAAVAQLVAEALDVPRAVRERAIGAFGR
Ga0306920_1025856411	3300032261	Soil	IHKLNVELDPLPGQAVQNLIVSTLNIPQAVRERAKLAFGR

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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