Metagenome / Metatranscriptome Family F049480

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F049480
Family Type	Metagenome / Metatranscriptome
Number of Sequences	146
Average Sequence Length	39 residues
Representative Sequence	MRKIFILFALVFALVTTATATVVTTAVTSDAAFALATR
Number of Associated Samples	97
Number of Associated Scaffolds	146

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	52.74 %
% of genes near scaffold ends (potentially truncated)	48.63 %
% of genes from short scaffolds (< 2000 bps)	94.52 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.699 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (41.781 % of family members)
Environment Ontology (ENVO)	Unclassified (39.726 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (85.616 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 54.55% β-sheet: 0.00% Coil/Unstructured: 45.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 146 Family Scaffolds
PF03734	YkuD	36.99
PF00753	Lactamase_B	2.05
PF04116	FA_hydroxylase	1.37
PF08714	Fae	1.37
PF00085	Thioredoxin	1.37
PF02653	BPD_transp_2	1.37
PF00440	TetR_N	1.37
PF05036	SPOR	1.37
PF02683	DsbD	0.68
PF00313	CSD	0.68
PF12697	Abhydrolase_6	0.68
PF13561	adh_short_C2	0.68
PF00561	Abhydrolase_1	0.68
PF02517	Rce1-like	0.68
PF02175	7TM_GPCR_Srb	0.68
PF13899	Thioredoxin_7	0.68

COG ID	Name	Functional Category	% Frequency in 146 Family Scaffolds
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	36.99
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	36.99
COG1795	Formaldehyde-activating enzyme (5,6,7,8-tetrahydromethanopterin hydrolyase)	Energy production and conversion [C]	1.37
COG3000	Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily	Lipid transport and metabolism [I]	1.37
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.68
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.68

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.70 %
Unclassified	root	N/A	36.30 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.70 %
Unclassified	root	N/A	36.30 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.70 %
Unclassified	root	N/A	36.30 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.30 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	19.18 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.37 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.30 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15.07 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.37 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.68 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.30 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.96 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	1.37 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.68 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.68 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.30 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	3.42 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.42 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.37 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.68 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.68 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.30 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	3.42 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.05 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.37 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.68 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.68 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.30 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	3.42 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.37 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.68 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.68 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.68 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.68 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.30 %
Mesorhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	3.42 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.37 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.68 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.68 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.68 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.68 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.68 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig51774	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300001471\|JGI12712J15308_10153248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	596	Open in IMG/M
3300001867\|JGI12627J18819_10018052	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2857	Open in IMG/M
3300001867\|JGI12627J18819_10029341	All Organisms → cellular organisms → Bacteria	2270	Open in IMG/M
3300004121\|Ga0058882_1592664	Not Available	620	Open in IMG/M
3300005332\|Ga0066388_100014500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6464	Open in IMG/M
3300005518\|Ga0070699_101564761	Not Available	604	Open in IMG/M
3300005764\|Ga0066903_100455726	All Organisms → cellular organisms → Bacteria	2140	Open in IMG/M
3300005764\|Ga0066903_100929708	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300005764\|Ga0066903_102239484	Not Available	1054	Open in IMG/M
3300005764\|Ga0066903_102276576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1046	Open in IMG/M
3300005764\|Ga0066903_102518036	Not Available	996	Open in IMG/M
3300005764\|Ga0066903_102739357	Not Available	956	Open in IMG/M
3300005764\|Ga0066903_103683359	Not Available	824	Open in IMG/M
3300005764\|Ga0066903_105023295	Not Available	702	Open in IMG/M
3300005764\|Ga0066903_105799005	Not Available	649	Open in IMG/M
3300005764\|Ga0066903_108935602	Not Available	508	Open in IMG/M
3300005921\|Ga0070766_10255782	Not Available	1113	Open in IMG/M
3300006052\|Ga0075029_100085409	Not Available	1875	Open in IMG/M
3300006059\|Ga0075017_100617734	Not Available	829	Open in IMG/M
3300006806\|Ga0079220_10792167	All Organisms → cellular organisms → Bacteria → Proteobacteria	715	Open in IMG/M
3300009520\|Ga0116214_1210902	Not Available	732	Open in IMG/M
3300009698\|Ga0116216_10268003	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300009700\|Ga0116217_10157620	Not Available	1513	Open in IMG/M
3300010046\|Ga0126384_10510147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1038	Open in IMG/M
3300010048\|Ga0126373_12229947	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300010358\|Ga0126370_10335906	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300010358\|Ga0126370_12623722	Not Available	504	Open in IMG/M
3300010366\|Ga0126379_11577506	Not Available	762	Open in IMG/M
3300010371\|Ga0134125_11969267	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300010379\|Ga0136449_103446356	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300010396\|Ga0134126_10717387	All Organisms → cellular organisms → Bacteria → Proteobacteria	1135	Open in IMG/M
3300010398\|Ga0126383_12942199	Not Available	556	Open in IMG/M
3300011120\|Ga0150983_10619813	Not Available	535	Open in IMG/M
3300011120\|Ga0150983_10665035	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300011120\|Ga0150983_15629670	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300012177\|Ga0153943_1137099	Not Available	533	Open in IMG/M
3300012951\|Ga0164300_10035677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1865	Open in IMG/M
3300012955\|Ga0164298_10393183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	893	Open in IMG/M
3300012960\|Ga0164301_10473684	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300015371\|Ga0132258_10929862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	2196	Open in IMG/M
3300016270\|Ga0182036_11417562	Not Available	582	Open in IMG/M
3300016270\|Ga0182036_11667644	Not Available	538	Open in IMG/M
3300016341\|Ga0182035_11738358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	564	Open in IMG/M
3300016357\|Ga0182032_10954510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	731	Open in IMG/M
3300016371\|Ga0182034_11152400	All Organisms → cellular organisms → Bacteria → Proteobacteria	673	Open in IMG/M
3300016404\|Ga0182037_11297285	All Organisms → cellular organisms → Bacteria → Proteobacteria	642	Open in IMG/M
3300016422\|Ga0182039_11453527	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300016445\|Ga0182038_11209648	Not Available	674	Open in IMG/M
3300016445\|Ga0182038_11419543	Not Available	622	Open in IMG/M
3300017822\|Ga0187802_10054306	Not Available	1468	Open in IMG/M
3300017822\|Ga0187802_10083347	Not Available	1193	Open in IMG/M
3300017970\|Ga0187783_10027185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4239	Open in IMG/M
3300017970\|Ga0187783_10181291	All Organisms → cellular organisms → Bacteria	1550	Open in IMG/M
3300017970\|Ga0187783_10655787	Not Available	758	Open in IMG/M
3300017970\|Ga0187783_10754448	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300017975\|Ga0187782_10561215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	876	Open in IMG/M
3300018060\|Ga0187765_10846912	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300020581\|Ga0210399_10146202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1954	Open in IMG/M
3300020582\|Ga0210395_10048024	All Organisms → cellular organisms → Bacteria	3124	Open in IMG/M
3300020582\|Ga0210395_10332655	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300020582\|Ga0210395_11290207	Not Available	535	Open in IMG/M
3300020583\|Ga0210401_10319460	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1414	Open in IMG/M
3300021088\|Ga0210404_10192325	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300021171\|Ga0210405_10701266	Not Available	782	Open in IMG/M
3300021178\|Ga0210408_11425933	Not Available	521	Open in IMG/M
3300021404\|Ga0210389_10265706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1343	Open in IMG/M
3300021404\|Ga0210389_10909076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	685	Open in IMG/M
3300021405\|Ga0210387_10734349	Not Available	874	Open in IMG/M
3300021405\|Ga0210387_10958875	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300021405\|Ga0210387_11687350	Not Available	537	Open in IMG/M
3300021406\|Ga0210386_10396928	Not Available	1188	Open in IMG/M
3300021406\|Ga0210386_11074805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	684	Open in IMG/M
3300021433\|Ga0210391_10431843	Not Available	1034	Open in IMG/M
3300021433\|Ga0210391_11244501	Not Available	575	Open in IMG/M
3300021560\|Ga0126371_12940314	Not Available	577	Open in IMG/M
3300021860\|Ga0213851_1781571	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300022498\|Ga0242644_1016198	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300022499\|Ga0242641_1017911	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300022499\|Ga0242641_1033911	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300022505\|Ga0242647_1032214	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300022506\|Ga0242648_1035810	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300022506\|Ga0242648_1054854	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300022506\|Ga0242648_1080718	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300022509\|Ga0242649_1047788	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300022510\|Ga0242652_1019193	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300022512\|Ga0242676_1012972	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300022513\|Ga0242667_1039918	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300022522\|Ga0242659_1060062	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300022523\|Ga0242663_1093685	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300022523\|Ga0242663_1106269	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300022523\|Ga0242663_1131977	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300022523\|Ga0242663_1138981	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300022523\|Ga0242663_1146140	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300022525\|Ga0242656_1068253	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300022527\|Ga0242664_1133526	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300022528\|Ga0242669_1126201	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300022530\|Ga0242658_1010427	All Organisms → cellular organisms → Bacteria	1488	Open in IMG/M
3300022530\|Ga0242658_1040266	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300022530\|Ga0242658_1120039	Not Available	650	Open in IMG/M
3300022530\|Ga0242658_1181677	Not Available	561	Open in IMG/M
3300022530\|Ga0242658_1208022	Not Available	535	Open in IMG/M
3300022531\|Ga0242660_1050335	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300022533\|Ga0242662_10227047	Not Available	597	Open in IMG/M
3300022533\|Ga0242662_10232116	Not Available	592	Open in IMG/M
3300022709\|Ga0222756_1017646	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300022714\|Ga0242671_1040793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	739	Open in IMG/M
3300022714\|Ga0242671_1128946	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300022715\|Ga0242678_1085717	Not Available	507	Open in IMG/M
3300022716\|Ga0242673_1081676	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300022717\|Ga0242661_1108789	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	587	Open in IMG/M
3300022717\|Ga0242661_1151278	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300022724\|Ga0242665_10104028	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300022726\|Ga0242654_10108551	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300022726\|Ga0242654_10123878	Not Available	837	Open in IMG/M
3300022726\|Ga0242654_10314961	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300022726\|Ga0242654_10318491	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300027497\|Ga0208199_1057050	Not Available	830	Open in IMG/M
3300027505\|Ga0209218_1051060	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300027545\|Ga0209008_1076576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	752	Open in IMG/M
3300027545\|Ga0209008_1103079	Not Available	637	Open in IMG/M
3300027817\|Ga0209112_10168864	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300027817\|Ga0209112_10230832	All Organisms → cellular organisms → Bacteria → Proteobacteria	643	Open in IMG/M
3300027895\|Ga0209624_10249302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1181	Open in IMG/M
3300027895\|Ga0209624_10406762	Not Available	907	Open in IMG/M
3300027898\|Ga0209067_10292363	Not Available	894	Open in IMG/M
3300029701\|Ga0222748_1126867	Not Available	519	Open in IMG/M
3300030969\|Ga0075394_11886452	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300031128\|Ga0170823_14401222	Not Available	503	Open in IMG/M
3300031231\|Ga0170824_103562721	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300031231\|Ga0170824_109912375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	723	Open in IMG/M
3300031446\|Ga0170820_16807435	Not Available	552	Open in IMG/M
3300031640\|Ga0318555_10506851	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300031708\|Ga0310686_112131943	Not Available	1423	Open in IMG/M
3300031719\|Ga0306917_10672966	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300031719\|Ga0306917_11082379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	625	Open in IMG/M
3300031910\|Ga0306923_12474658	Not Available	513	Open in IMG/M
3300031954\|Ga0306926_12905034	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300031962\|Ga0307479_10624749	Not Available	1059	Open in IMG/M
3300031962\|Ga0307479_11905162	Not Available	545	Open in IMG/M
3300032059\|Ga0318533_10748928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	717	Open in IMG/M
3300032076\|Ga0306924_10812629	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300032261\|Ga0306920_101000124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	1218	Open in IMG/M
3300032515\|Ga0348332_12613011	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300032828\|Ga0335080_12023356	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300032898\|Ga0335072_10087582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4022	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.95%
Host-Associated	Host-Associated	1.37%
Engineered	Engineered	0.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.84%
Aquatic	Environmental → Aquatic	4.11%
Plants	Host-Associated → Plants	0.68%
Fungi	Host-Associated → Fungi	0.68%
Modeled	Engineered → Modeled	0.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.15%
Freshwater	Environmental → Aquatic → Freshwater	2.05%
Sediment	Environmental → Aquatic → Sediment	2.05%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.68%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.68%
Mycelium	Host-Associated → Fungi → Mycelium	0.68%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.18%
Loam	Environmental → Terrestrial → Soil → Loam	18.49%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.05%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.37%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.68%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.68%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.68%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	56.16%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.33%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.05%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.37%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.68%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.68%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.68%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	41.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.53%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.79%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.11%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.74%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.05%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.37%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.37%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.37%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.37%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.68%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.68%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.68%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.68%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.68%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004121	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF109 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012177	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ027 MetaG	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022498	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022499	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022505	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022506	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022509	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022510	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022512	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022513	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022523	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022709	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022714	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022715	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027817	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030969	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0774.00003680	2166559005	Simulated	VRKIFILFALVFALVTTATATVVTTAVTSDAALALATR
JGI12712J15308_101532482	3300001471	Forest Soil	MRRLFILFAIVFALVSTGTATVVTTALTSDTAMALAVR*
JGI12627J18819_100180524	3300001867	Forest Soil	MRKLFILVAIVFALVSAGAATVVTTALTSDAAMALAAR*
JGI12627J18819_100293414	3300001867	Forest Soil	MRKLFILVAVVFALVTTGAATVVTTALTSDAAMALAVR*
Ga0058882_15926642	3300004121	Forest Soil	EPPPIRTTGNGGSIMRNLFILVAVVFALVSVGAATVVTTALTSDAAIALGVR*
Ga0066388_1000145008	3300005332	Tropical Forest Soil	VQWKWGIIMRKLFILFAVVFALVSGATVTVVTTAMTSDAAFAWATR*
Ga0070699_1015647611	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MTIMRKLFILFALVFALVTTATAVAVTTAVTSDAAIAQAVR*
Ga0066903_1004557262	3300005764	Tropical Forest Soil	MRKLFILFAVVFALVSGATATVVTTALTSDAALALATR*
Ga0066903_1009297084	3300005764	Tropical Forest Soil	MRKLFILFAVVFALVSGATVTVVTTAMTSDAAFAWATR*
Ga0066903_1022394842	3300005764	Tropical Forest Soil	MRKIFILFALVFALVTAGTAAVVTTAMTSDAAFALATR*
Ga0066903_1022765763	3300005764	Tropical Forest Soil	MRNLFILFAVVFALVSGTTATVVTTAMTSDAAFARATR*
Ga0066903_1025180362	3300005764	Tropical Forest Soil	MRKIFILFALVFALVTATTATVVTTAMTSDAAFAQATR*
Ga0066903_1027393572	3300005764	Tropical Forest Soil	MSKIFILFALVFALVTTATATVVTTAMTSDAAFALATR*
Ga0066903_1036833591	3300005764	Tropical Forest Soil	MRKIFILFALVFALVTTATATVVTTAMTSDAAFALATR*
Ga0066903_1050232951	3300005764	Tropical Forest Soil	MRKIFILFASVFALVTTATATVVTTAMTSDAAFALATLR*
Ga0066903_1057990052	3300005764	Tropical Forest Soil	MRQLFILFALVFALVTTATATVVTTDVISDSAIAQQASR*
Ga0066903_1089356021	3300005764	Tropical Forest Soil	QGKRGTIMRKIFILFALVLALVTTALATVVATAMTSDAAFALATR*
Ga0070766_102557821	3300005921	Soil	MRKLFILVAVTFALVSTGAATVVTTALTSDAAMALALR*
Ga0075029_1000854093	3300006052	Watersheds	MRKIFILFALVFALVTGATATMVTTAVTSDAALALATR*
Ga0075017_1006177342	3300006059	Watersheds	MRKIFILFALVFALVSGATATVVTTAVTSDAALALATR*
Ga0079220_107921672	3300006806	Agricultural Soil	MRKLFILFAVVFALVSGATATVVTAALTSDAALALATR*
Ga0116214_12109021	3300009520	Peatlands Soil	MRKIFILFAIVFALVTTGTATVVVTAVSSDAAMTYVQGTV*
Ga0116216_102680032	3300009698	Peatlands Soil	MRKIFVLFALVFALVTTATATVVTTAVTSDAALALATR*
Ga0116217_101576202	3300009700	Peatlands Soil	MRKIFILFAIVFALVTTGTATVVVTAVPSDAAMTYVQGTV*
Ga0126384_105101472	3300010046	Tropical Forest Soil	MRQLFILFALVFALVTTATATVVTTDVISDSTIAQQASR*
Ga0126373_122299472	3300010048	Tropical Forest Soil	MRQLFILFALVFALVTTAAATVVTSDVISDSAIAQQVSR*
Ga0126370_103359062	3300010358	Tropical Forest Soil	VQWKWGIIMRKLFIMFAVVFALVSGATVTVVTTAMTSDAAFAWATR*
Ga0126370_126237221	3300010358	Tropical Forest Soil	MRKIFILFALVFALVTTATATVATTAMTSDAAFALATR*
Ga0126379_115775061	3300010366	Tropical Forest Soil	MRKIFILFALVFALVTTATATVVTTAMTSDAAFAQATR*
Ga0134125_119692672	3300010371	Terrestrial Soil	KWGTIMRKLFILFAVVFALVSGATATVVTTALTSDAALALATR*
Ga0136449_1034463562	3300010379	Peatlands Soil	MRKIFILFALVFALVTTATATVVTMAVTSDAALALATR*
Ga0134126_107173873	3300010396	Terrestrial Soil	MRKLFILFAIVFALVSGATATVVTTAVTSDAALALATR*
Ga0126383_129421991	3300010398	Tropical Forest Soil	MIMRKIFILFALVFALVTTATATVVTTAMTSDAAFALATR*
Ga0150983_106198131	3300011120	Forest Soil	FILVAVAFALVSTGAATVVTTALTSDAAMALALR*
Ga0150983_106650352	3300011120	Forest Soil	SIMRKLFILFAIVFALVSTGTATVVTTALTSDTAMALAVR*
Ga0150983_156296702	3300011120	Forest Soil	MRKIFILFALVFALVTAATATVVTTAVTSDAAQALATR*
Ga0153943_11370991	3300012177	Attine Ant Fungus Gardens	MRKIFILFALVFALVTGATANVVATAVTSDDVLALATR*
Ga0164300_100356772	3300012951	Soil	VRKIFILFALVFALVTTATATVVTTAVTSDAALALATR*
Ga0164298_103931832	3300012955	Soil	VRKIFILFALVFALVTTATATVGTTAVTSDAAPALATR*
Ga0164301_104736841	3300012960	Soil	VRKIFVLFALVFALVTTATATVVTTAVTSDAAALATR*
Ga0132258_109298622	3300015371	Arabidopsis Rhizosphere	MRTLFILVTVVFALVSIGTATVVTTALTSNAAMAQAIR*
Ga0182036_114175622	3300016270	Soil	MRKLFILFAVVFALVSGATVTVVTTEMTSDAAFAWATR
Ga0182036_116676441	3300016270	Soil	MRKIFILFALVFALVTTATATVVTTAVTSDAAFALAT
Ga0182035_117383582	3300016341	Soil	MRKIFILFALVFALVTTATATVVTTAVTSDAAIALQVSR
Ga0182032_109545101	3300016357	Soil	DDDMRQLFILFALVFALVTTATATVVTTDVISDSAIAQQASR
Ga0182034_111524001	3300016371	Soil	MRKIFVLFALVFALVMTATATVVTTAVTSDTAVALATR
Ga0182037_112972852	3300016404	Soil	VMRKIFILFALVFALVMTATATVVTTAVTSDTAVALATR
Ga0182039_114535273	3300016422	Soil	VQWKWGIIMRKLFILFAVVFALVSGATVTVVTTAMTSDAAFAWATR
Ga0182038_112096481	3300016445	Soil	MRQLFILFALVFALVTTATATVVTTDVISDSEIAQQASR
Ga0182038_114195431	3300016445	Soil	MRKIFILFALVFALVTTATATAVTTAMTSDAAFALATR
Ga0187802_100543064	3300017822	Freshwater Sediment	MRKIFILFALVFALVTTATATVVTTAMTSDAAFALATR
Ga0187802_100833471	3300017822	Freshwater Sediment	MRKIFILFALVFALVTGATATMVTTAVTSDAALALATR
Ga0187783_100271854	3300017970	Tropical Peatland	MRQLFILFALVFALVTTATATVVTTDVISDGTIAQQASR
Ga0187783_101812913	3300017970	Tropical Peatland	MRKIFILFAIVFALVTTATATVVVTAVSSDAAMALATR
Ga0187783_106557872	3300017970	Tropical Peatland	MRKIFILFTIVFTLVTAVTGTVVVTAVSSDAAMALATR
Ga0187783_107544482	3300017970	Tropical Peatland	MGDDMRKIFILFALVFALVSGATATVVTTALTSDAALALATR
Ga0187782_105612151	3300017975	Tropical Peatland	MRKIFILFAIVFALVTTATATVVVTAVSSDSAMALATR
Ga0187765_108469121	3300018060	Tropical Peatland	MRKLFILFAVVFALVSGATATVVTTALTSDAALALATR
Ga0210399_101462021	3300020581	Soil	WGTNVRKIFVLFALVFALVTTATATVVTTAVTSDAALALATR
Ga0210395_100480243	3300020582	Soil	MRKLFILVAVTFALVSTGAATVVTTALTSDAAMALALR
Ga0210395_103326551	3300020582	Soil	MRKLFILFAIVFALVSTGTATVVTTALTSDTAMALAVR
Ga0210395_112902071	3300020582	Soil	MRKLFILVAVVFALVSTGTATVVTTALTSDAAMALAVR
Ga0210401_103194602	3300020583	Soil	MRNLFILVAVVFALVSVGAATVVTTALTSDAAIALGVR
Ga0210404_101923252	3300021088	Soil	VRKIFVLFALVFALVTTATATVVTTAVTSDAALALATR
Ga0210405_107012661	3300021171	Soil	MRKIFILFALVFALVTGATANVVATAVTSDAVLALATR
Ga0210408_114259331	3300021178	Soil	MRKIFILFALVFALVTTATATVVTTAVTSDAAIAQQAAR
Ga0210389_102657063	3300021404	Soil	MRKIFILFALVFASVTTATATVVTTAVTSDAALALATR
Ga0210389_109090761	3300021404	Soil	MRRLFILFAIVFALVSTGTATVVTAALTSDTAMALAVR
Ga0210387_107343492	3300021405	Soil	GKGVQIMRKLFILVAVTFALVSTGAATVVTTALTSDAAMALALR
Ga0210387_109588752	3300021405	Soil	MRKIFILFALVFALVTTATATVVTTAVTSDAAFALATR
Ga0210387_116873502	3300021405	Soil	MRKLFILFALVFALVTTATATVVTTAVTSDAAMALASAKL
Ga0210386_103969281	3300021406	Soil	IMRKLFIFVAVVFALVSIGAGTVVTTALTSDGALAQAIR
Ga0210386_110748051	3300021406	Soil	MRKLFILFAIAFALVSTGAATVVTTALTSDAAMALAVR
Ga0210391_104318431	3300021433	Soil	TRGTGKGVQIMRKLFILVAVTFALVSTGAATVVTTALTSDAAMALALR
Ga0210391_112445011	3300021433	Soil	PIRTTGNGGSIMRNLFILVAVVFALVSVGAATVVTTALTSDAAIALGVR
Ga0126371_129403142	3300021560	Tropical Forest Soil	MRKIFILFALVFALVTTATAAVVTTAMTSDAAFALATR
Ga0213851_17815711	3300021860	Watersheds	IMRKIFIFFALVFALVTTATATVVTTAVTSDAALALATR
Ga0242644_10161982	3300022498	Soil	GTNVRKIFVLFALVFALVTTATATVVTTAVTSDAALALATR
Ga0242641_10179112	3300022499	Soil	DMRKGFIRFARVVALVSGATATVVTTALTSDAALALATR
Ga0242641_10339112	3300022499	Soil	MREILVLFALVFALVTTATATVVTTAVTSDAALALATR
Ga0242647_10322142	3300022505	Soil	GTNVRKIFILFALVFALVTTATATVVTTAVTSDAAPALATR
Ga0242648_10358101	3300022506	Soil	VMRKIFVLFALVFALVTTATATVVTTAVTSDAAFALATR
Ga0242648_10548541	3300022506	Soil	SIMRRLFILFAIVFALVSTGTATVVTTALTSDTAMALAVR
Ga0242648_10807182	3300022506	Soil	GDDMRKIFILFALVFALVSGGTATVVTTALTSDAALALATR
Ga0242649_10477881	3300022509	Soil	GDDMRKIFILFALVFALVSGATATVVTTALTSDAALALATR
Ga0242652_10191932	3300022510	Soil	VRKIFILFALVFALVTTATATVVTTAVTSDAGLALATR
Ga0242676_10129722	3300022512	Soil	GTIVRKIFILFALVFALVTTATATVVTTAVTSDAALALATR
Ga0242667_10399182	3300022513	Soil	GINMRKIFILFALVFGLVTTATATVVTTAVTSDAALALATR
Ga0242659_10600622	3300022522	Soil	DDMRRIFILFALVFALVSGATATVVTTALTSDAALALATR
Ga0242663_10936852	3300022523	Soil	RKIFILFALVFALVSGATATVVTTALTSDAALALATR
Ga0242663_11062691	3300022523	Soil	MRKIFVLFALVFALVTTATATVVTTAVTSDAAFALATR
Ga0242663_11319771	3300022523	Soil	IFILFALVFAFVTTATATVVTTAVTSDAAIAQQAAR
Ga0242663_11389812	3300022523	Soil	GSIMRKLFILFAIVFALVSTGTATVVTTALTSDTAMALAVR
Ga0242663_11461402	3300022523	Soil	REIFILFALVFAFVTAATATVVTTAVTSNAALALATR
Ga0242656_10682531	3300022525	Soil	GTIMRKIFILFALVFALVTTATATVVTTAVTSDAAMALATR
Ga0242664_11335262	3300022527	Soil	GTNVRKIFILFALVFALVTTATATVVTTAVTSDAALALATR
Ga0242669_11262012	3300022528	Soil	VMRKIFILFALVFALVTTATATVVTTAVTSDAAIAQQAAR
Ga0242658_10104271	3300022530	Soil	NVRKIFILFALVFALVTTATATVVTTAVTSDAALALATR
Ga0242658_10402663	3300022530	Soil	TVMRKIFILFALVFALVTTATATVVTTAVTSDAAFALATR
Ga0242658_11200391	3300022530	Soil	KLFILVAVVFALVSTGTATVVTTALTSDAAMALAVR
Ga0242658_11816771	3300022530	Soil	KIFILFAMVFALVTTATATVVTTAVTSDAALALATR
Ga0242658_12080222	3300022530	Soil	SIMRKLFILVAIVFALVSAGAATVVTTALTSDAAMALVVR
Ga0242660_10503351	3300022531	Soil	TNVRKIFVLLALVFALVTTATATVVTTAVTSDAALALATR
Ga0242662_102270473	3300022533	Soil	VHMRKIFILFALVFALVTMATATVVTTAVSSDTAMALATR
Ga0242662_102321162	3300022533	Soil	RKLFILFALVFALVTTATAVVVTTAVTSDAAIAQAVR
Ga0222756_10176463	3300022709	Soil	GTNVRKIFILFARVFALVTTATATVVTTAVTSDAALALATR
Ga0242671_10407931	3300022714	Soil	IVRKIFILFALVFALVTTATATVVTTAVTSDAALALATR
Ga0242671_11289462	3300022714	Soil	LIMRKLFILVAVAFALVSAGAATVVTTALTSDAAMALAVR
Ga0242678_10857171	3300022715	Soil	SIMRKLFILVAVVFALVSTGTATVVTTALTSDAAMALAVR
Ga0242673_10816762	3300022716	Soil	KIFILFALVFGLVTTATATVVTTDVTFDAALALATR
Ga0242661_11087892	3300022717	Soil	KIFILFALVFALVTTATATVVTTAVTSDAALALATR
Ga0242661_11512781	3300022717	Soil	EGQLGFGMRKIFILFALVFALVTMATATVVTTAMTSDAAIAQQAAR
Ga0242665_101040282	3300022724	Soil	GDDMRRIFILFALVFALVSGATATVVTTALTSDAALALATR
Ga0242654_101085512	3300022726	Soil	AIMRKIFILFALLFALVTTATAAVVTTAVTSDAAFALATR
Ga0242654_101238782	3300022726	Soil	KIFILFALVFALVTTATAMVVTTAVTSDTAFALATR
Ga0242654_103149611	3300022726	Soil	RKIFILFALVFALVTTATATVVTTAATSDAAMALATR
Ga0242654_103184912	3300022726	Soil	RKIFVLFALVFALVTTATATVVTTAVTSDAAFALATR
Ga0208199_10570501	3300027497	Peatlands Soil	MRKIFILFAIVFALVTTGTATVVVTAVSSDAAMTYVQGTV
Ga0209218_10510602	3300027505	Forest Soil	PLPGNGGSIMRRLFILFAIVFALVSTGTATVVTAALTSDTAMALAVR
Ga0209008_10765762	3300027545	Forest Soil	MRRLFILFAIVFALVSTGTATVVTTALTSDTAMALAVR
Ga0209008_11030791	3300027545	Forest Soil	KLFIFVAVVFALVSIGAGTVVTTALTSDGALAQAIR
Ga0209112_101688642	3300027817	Forest Soil	MRKLFILVAVVFALVTTGAATVVTTALTSDAAMALAVR
Ga0209112_102308322	3300027817	Forest Soil	MRKLFILFAVVFALVSTGTATVVVTALTSDAAMALAVR
Ga0209624_102493024	3300027895	Forest Soil	MRKLFILVAIVFALVSAGAATVVTTALTSDAAMALAVR
Ga0209624_104067621	3300027895	Forest Soil	MRKLFILVAVTFALVSTGAATVVTTALTSDAAMALAL
Ga0209067_102923631	3300027898	Watersheds	MRKIFILFALVFALVSGATATVVTTAVTSDAALALATR
Ga0222748_11268671	3300029701	Soil	TIMRKIFILFALVFALVTTATATVVTTAITSHAAFALATR
Ga0075394_118864521	3300030969	Soil	KIFILFALVFALVTTATAAVVTTAVTSDAALALATR
Ga0170823_144012221	3300031128	Forest Soil	MGTIMRKIFILFALVFALVTGATATMVTTAVTSDAALALATR
Ga0170824_1035627213	3300031231	Forest Soil	GTNMRKIFILFALVFALVTTATAAVVTTAVTSDAALALATR
Ga0170824_1099123751	3300031231	Forest Soil	TERGTIMRKIFILFALVFALVTTATAAVVTTAVTSDAALALATR
Ga0170820_168074352	3300031446	Forest Soil	MRKLFILVAVVFALVSVGAATVVTTALTSDAAMALATR
Ga0318555_105068513	3300031640	Soil	MRKLFILFAVVFALVSGATVTVVTTAMTSDAAFAWATR
Ga0310686_1121319433	3300031708	Soil	MRKIFLLFALVFALVTGATATVVTTAVTSDAALALATR
Ga0306917_106729662	3300031719	Soil	MRKIFILFALVFALVTTATATVVTTAVTSDAAIAQQVSR
Ga0306917_110823792	3300031719	Soil	LFILFALVFALVTTATATVVTTDVISDSAIAQQASR
Ga0306923_124746581	3300031910	Soil	MRKIFILFALVFALVTTATATVVTTAETSDAAIAQQVSR
Ga0306926_129050342	3300031954	Soil	IFILFALVFALVTTATATVVTTAVTSDAAIAQQVSR
Ga0307479_106247492	3300031962	Hardwood Forest Soil	MRKIFIPFALVFALVTTATATVVTTAMTSDGAFARATR
Ga0307479_119051621	3300031962	Hardwood Forest Soil	MRKIFILFALVFALVTGATATMVTTAVTSDAALAPATR
Ga0318533_107489281	3300032059	Soil	FILFALVFALVTTATATVVTTAVTSDAAIAQQVSR
Ga0306924_108126292	3300032076	Soil	KIFILFALVFALVTTATATVVTTAVTSDAAIAQQVSR
Ga0306920_1010001241	3300032261	Soil	MHKIFILFAIVFALVTTATATVVVTAVCSDAAMALATR
Ga0348332_126130112	3300032515	Plant Litter	GDSIMRKLFILVAVAFALVSTGAATVVTTALTSDAAMALAVR
Ga0335080_120233562	3300032828	Soil	AQRKWGTIMRKLFILFAVVFALVSGATATVVTTALTSDAAFALATR
Ga0335072_100875825	3300032898	Soil	MRKLFILFAIVFALVSTATATVVTTALTSDTAMALAVR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F049480

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences