Metagenome / Metatranscriptome Family F049466

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F049466
Family Type	Metagenome / Metatranscriptome
Number of Sequences	146
Average Sequence Length	52 residues
Representative Sequence	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARSPLRLP
Number of Associated Samples	108
Number of Associated Scaffolds	146

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	22.07 %
% of genes near scaffold ends (potentially truncated)	36.99 %
% of genes from short scaffolds (< 2000 bps)	91.78 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (53.425 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.808 % of family members)
Environment Ontology (ENVO)	Unclassified (42.466 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (71.918 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 43.90% β-sheet: 0.00% Coil/Unstructured: 56.10%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 146 Family Scaffolds
PF07411	DUF1508	10.27
PF07690	MFS_1	4.11
PF00890	FAD_binding_2	2.05
PF07883	Cupin_2	2.05
PF13683	rve_3	1.37
PF13374	TPR_10	1.37
PF13340	DUF4096	1.37
PF13191	AAA_16	0.68
PF00196	GerE	0.68
PF13276	HTH_21	0.68
PF14417	MEDS	0.68
PF04542	Sigma70_r2	0.68
PF13586	DDE_Tnp_1_2	0.68
PF13333	rve_2	0.68
PF13808	DDE_Tnp_1_assoc	0.68
PF01272	GreA_GreB	0.68
PF00324	AA_permease	0.68
PF13358	DDE_3	0.68
PF01610	DDE_Tnp_ISL3	0.68
PF07470	Glyco_hydro_88	0.68
PF01699	Na_Ca_ex	0.68
PF09250	Prim-Pol	0.68
PF13193	AMP-binding_C	0.68

COG ID	Name	Functional Category	% Frequency in 146 Family Scaffolds
COG3422	Uncharacterized conserved protein YegP, UPF0339 family	Function unknown [S]	10.27
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.68
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.68
COG0531	Serine transporter YbeC, amino acid:H+ symporter family	Amino acid transport and metabolism [E]	0.68
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.68
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.68
COG0833	Amino acid permease	Amino acid transport and metabolism [E]	0.68
COG1113	L-asparagine transporter or related permease	Amino acid transport and metabolism [E]	0.68
COG1115	Na+/alanine symporter	Amino acid transport and metabolism [E]	0.68
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.68
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.68
COG3464	Transposase	Mobilome: prophages, transposons [X]	0.68
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.68

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.42 %
Unclassified	root	N/A	46.58 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.42 %
Unclassified	root	N/A	46.58 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.42 %
Unclassified	root	N/A	46.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.58 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	39.73 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.68 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.58 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	38.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.68 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.58 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	32.19 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.37 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.68 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.58 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	13.01 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.37 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.37 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.68 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.68 %
Glycomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Glycomycetales	0.68 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.68 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.58 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	12.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.37 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.68 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.68 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.68 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.68 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.68 %
Glycomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Glycomycetales → Glycomycetaceae	0.68 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.68 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.58 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	8.22 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	1.37 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.37 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.68 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.68 %
Actinomycetospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora	0.68 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.68 %
Glycomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Glycomycetales → Glycomycetaceae → Glycomyces	0.68 %
unclassified Pseudonocardiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae	0.68 %
unclassified Streptosporangiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → unclassified Streptosporangiaceae	0.68 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.68 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.68 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.58 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	1.37 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.37 %
Actinomycetospora succinea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora succinea	0.68 %
Pseudonocardiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	0.68 %
unclassified Pseudonocardia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia	0.68 %
unclassified Mycobacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium	0.68 %
Streptosporangiaceae bacterium NEAU-GS5	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → unclassified Streptosporangiaceae → Streptosporangiaceae bacterium NEAU-GS5	0.68 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.68 %
Glycomyces tenuis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Glycomycetales → Glycomycetaceae → Glycomyces → Glycomyces tenuis	0.68 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.68 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.68 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.68 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.58 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	1.37 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.37 %
Mycobacterium sp. ITM-2016-00318	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. ITM-2016-00318	0.68 %
Pseudonocardia sp. S2-4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. S2-4	0.68 %
Actinomycetospora succinea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora succinea	0.68 %
Pseudonocardiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	0.68 %
Streptosporangiaceae bacterium NEAU-GS5	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → unclassified Streptosporangiaceae → Streptosporangiaceae bacterium NEAU-GS5	0.68 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.68 %
Glycomyces tenuis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Glycomycetales → Glycomycetaceae → Glycomyces → Glycomyces tenuis	0.68 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.68 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.68 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.68 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.68 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002568\|C688J35102_117936398	Not Available	517	Open in IMG/M
3300002568\|C688J35102_120480466	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300002568\|C688J35102_120749258	Not Available	1479	Open in IMG/M
3300004081\|Ga0063454_100513398	All Organisms → cellular organisms → Bacteria → Terrabacteria group	847	Open in IMG/M
3300004156\|Ga0062589_102029450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	584	Open in IMG/M
3300004479\|Ga0062595_101968074	Not Available	563	Open in IMG/M
3300005328\|Ga0070676_11506031	Not Available	518	Open in IMG/M
3300005329\|Ga0070683_100175855	All Organisms → cellular organisms → Bacteria	2032	Open in IMG/M
3300005329\|Ga0070683_100246190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1700	Open in IMG/M
3300005330\|Ga0070690_100326390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1107	Open in IMG/M
3300005331\|Ga0070670_101524529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Glycomycetales → Glycomycetaceae → Glycomyces → Glycomyces tenuis	614	Open in IMG/M
3300005334\|Ga0068869_100164136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1731	Open in IMG/M
3300005334\|Ga0068869_100952006	Not Available	745	Open in IMG/M
3300005335\|Ga0070666_10966658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	631	Open in IMG/M
3300005337\|Ga0070682_100273485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	1228	Open in IMG/M
3300005339\|Ga0070660_100597014	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300005344\|Ga0070661_100517421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	957	Open in IMG/M
3300005347\|Ga0070668_100682024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	905	Open in IMG/M
3300005354\|Ga0070675_101668467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	588	Open in IMG/M
3300005355\|Ga0070671_101764439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	550	Open in IMG/M
3300005366\|Ga0070659_100560181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	979	Open in IMG/M
3300005459\|Ga0068867_100126247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora succinea	1983	Open in IMG/M
3300005459\|Ga0068867_100971777	Not Available	768	Open in IMG/M
3300005539\|Ga0068853_102135827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	543	Open in IMG/M
3300005548\|Ga0070665_100650506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1067	Open in IMG/M
3300005548\|Ga0070665_102311735	Not Available	540	Open in IMG/M
3300005578\|Ga0068854_100243667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1433	Open in IMG/M
3300005616\|Ga0068852_101375354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	728	Open in IMG/M
3300005618\|Ga0068864_101971414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	590	Open in IMG/M
3300005834\|Ga0068851_10332475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	880	Open in IMG/M
3300005842\|Ga0068858_100346839	Not Available	1422	Open in IMG/M
3300006846\|Ga0075430_100478058	Not Available	1028	Open in IMG/M
3300006853\|Ga0075420_100334969	Not Available	1311	Open in IMG/M
3300006880\|Ga0075429_100109043	All Organisms → cellular organisms → Bacteria	2420	Open in IMG/M
3300006880\|Ga0075429_100590578	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300006904\|Ga0075424_102656126	Not Available	523	Open in IMG/M
3300009011\|Ga0105251_10290547	Not Available	740	Open in IMG/M
3300009094\|Ga0111539_12811383	Not Available	564	Open in IMG/M
3300009098\|Ga0105245_12755235	Not Available	544	Open in IMG/M
3300009100\|Ga0075418_11471493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	739	Open in IMG/M
3300009100\|Ga0075418_12507146	Not Available	563	Open in IMG/M
3300009148\|Ga0105243_11253128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	757	Open in IMG/M
3300009156\|Ga0111538_11897121	Not Available	750	Open in IMG/M
3300009156\|Ga0111538_13514889	Not Available	544	Open in IMG/M
3300009177\|Ga0105248_12700839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	566	Open in IMG/M
3300009551\|Ga0105238_10433275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1310	Open in IMG/M
3300009840\|Ga0126313_10282044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1295	Open in IMG/M
3300009840\|Ga0126313_11183559	Not Available	630	Open in IMG/M
3300010036\|Ga0126305_10272223	Not Available	1094	Open in IMG/M
3300010036\|Ga0126305_10307290	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300010037\|Ga0126304_10505108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	812	Open in IMG/M
3300010039\|Ga0126309_10678604	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300010044\|Ga0126310_10028519	All Organisms → cellular organisms → Bacteria	2901	Open in IMG/M
3300010044\|Ga0126310_11502562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	553	Open in IMG/M
3300010045\|Ga0126311_10258474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1295	Open in IMG/M
3300010166\|Ga0126306_10279768	Not Available	1280	Open in IMG/M
3300010166\|Ga0126306_11180129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	629	Open in IMG/M
3300010371\|Ga0134125_11224007	Not Available	820	Open in IMG/M
3300010375\|Ga0105239_12778060	Not Available	571	Open in IMG/M
3300010400\|Ga0134122_13277482	Not Available	508	Open in IMG/M
3300010403\|Ga0134123_13568581	Not Available	504	Open in IMG/M
3300012212\|Ga0150985_102533220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1218	Open in IMG/M
3300012212\|Ga0150985_103125985	Not Available	528	Open in IMG/M
3300012212\|Ga0150985_109819814	Not Available	2553	Open in IMG/M
3300012212\|Ga0150985_114892767	Not Available	575	Open in IMG/M
3300012212\|Ga0150985_116319262	Not Available	1089	Open in IMG/M
3300012212\|Ga0150985_116570711	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300012212\|Ga0150985_116803132	Not Available	599	Open in IMG/M
3300012469\|Ga0150984_117624875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	544	Open in IMG/M
3300012469\|Ga0150984_121465591	Not Available	853	Open in IMG/M
3300012902\|Ga0157291_10323344	Not Available	544	Open in IMG/M
3300013102\|Ga0157371_10877785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	679	Open in IMG/M
3300013105\|Ga0157369_12323764	Not Available	543	Open in IMG/M
3300013307\|Ga0157372_10856580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1055	Open in IMG/M
3300013307\|Ga0157372_10985913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	976	Open in IMG/M
3300013308\|Ga0157375_10569711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1293	Open in IMG/M
3300013308\|Ga0157375_10610334	Not Available	1249	Open in IMG/M
3300014326\|Ga0157380_10460123	All Organisms → cellular organisms → Bacteria	1224	Open in IMG/M
3300014488\|Ga0182001_10328549	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300015373\|Ga0132257_103095461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	606	Open in IMG/M
3300017965\|Ga0190266_10962179	All Organisms → cellular organisms → Bacteria → Terrabacteria group	567	Open in IMG/M
3300018422\|Ga0190265_11974297	Not Available	689	Open in IMG/M
3300018432\|Ga0190275_10026614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4579	Open in IMG/M
3300018432\|Ga0190275_10143393	All Organisms → cellular organisms → Bacteria	2191	Open in IMG/M
3300018432\|Ga0190275_10653555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. ITM-2016-00318	1104	Open in IMG/M
3300018432\|Ga0190275_11329216	Not Available	795	Open in IMG/M
3300018432\|Ga0190275_12059418	Not Available	649	Open in IMG/M
3300018465\|Ga0190269_11482876	Not Available	557	Open in IMG/M
3300018466\|Ga0190268_10497131	Not Available	826	Open in IMG/M
3300018466\|Ga0190268_10762958	Not Available	724	Open in IMG/M
3300018469\|Ga0190270_10063752	Not Available	2641	Open in IMG/M
3300018476\|Ga0190274_10097629	Not Available	2324	Open in IMG/M
3300018476\|Ga0190274_12012276	Not Available	674	Open in IMG/M
3300018481\|Ga0190271_10372825	All Organisms → cellular organisms → Bacteria	1514	Open in IMG/M
3300018481\|Ga0190271_10720120	Not Available	1121	Open in IMG/M
3300018920\|Ga0190273_10063520	All Organisms → cellular organisms → Bacteria	1923	Open in IMG/M
3300018920\|Ga0190273_10397136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	968	Open in IMG/M
3300018920\|Ga0190273_10400894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	965	Open in IMG/M
3300019767\|Ga0190267_10386470	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300024426\|Ga0196960_10158568	Not Available	707	Open in IMG/M
3300025899\|Ga0207642_10586358	Not Available	692	Open in IMG/M
3300025908\|Ga0207643_11098569	Not Available	513	Open in IMG/M
3300025914\|Ga0207671_11122616	Not Available	617	Open in IMG/M
3300025918\|Ga0207662_10467652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	864	Open in IMG/M
3300025919\|Ga0207657_11174752	Not Available	584	Open in IMG/M
3300025933\|Ga0207706_11724469	Not Available	504	Open in IMG/M
3300025935\|Ga0207709_10101330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1904	Open in IMG/M
3300025935\|Ga0207709_10474392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	972	Open in IMG/M
3300025941\|Ga0207711_11554302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	605	Open in IMG/M
3300025942\|Ga0207689_10447222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1080	Open in IMG/M
3300025944\|Ga0207661_10617964	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300025961\|Ga0207712_11283529	Not Available	654	Open in IMG/M
3300025972\|Ga0207668_10932410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	774	Open in IMG/M
3300025981\|Ga0207640_10573831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	951	Open in IMG/M
3300025986\|Ga0207658_11757818	Not Available	566	Open in IMG/M
3300026023\|Ga0207677_10253584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1430	Open in IMG/M
3300026035\|Ga0207703_11092142	Not Available	766	Open in IMG/M
3300026067\|Ga0207678_11298723	Not Available	644	Open in IMG/M
3300026075\|Ga0207708_11207589	Not Available	661	Open in IMG/M
3300026078\|Ga0207702_10339925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1434	Open in IMG/M
3300026095\|Ga0207676_12072940	Not Available	567	Open in IMG/M
3300026116\|Ga0207674_10181808	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2054	Open in IMG/M
3300026121\|Ga0207683_10139622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2183	Open in IMG/M
3300026121\|Ga0207683_11038591	Not Available	760	Open in IMG/M
3300027880\|Ga0209481_10142375	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300027907\|Ga0207428_11056344	Not Available	569	Open in IMG/M
3300028380\|Ga0268265_10304337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1437	Open in IMG/M
3300028592\|Ga0247822_11295404	Not Available	611	Open in IMG/M
3300028596\|Ga0247821_10219985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1130	Open in IMG/M
3300028597\|Ga0247820_10246994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1152	Open in IMG/M
3300028597\|Ga0247820_10520734	Not Available	812	Open in IMG/M
3300028597\|Ga0247820_11216205	Not Available	544	Open in IMG/M
3300028809\|Ga0247824_10804854	Not Available	581	Open in IMG/M
3300028810\|Ga0307294_10187112	Not Available	709	Open in IMG/M
3300031093\|Ga0308197_10324951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	576	Open in IMG/M
3300031995\|Ga0307409_102763128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. S2-4	519	Open in IMG/M
3300032002\|Ga0307416_101953080	Not Available	690	Open in IMG/M
3300032080\|Ga0326721_10038159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → unclassified Streptosporangiaceae → Streptosporangiaceae bacterium NEAU-GS5	2004	Open in IMG/M
3300032080\|Ga0326721_10408043	Not Available	788	Open in IMG/M
3300032080\|Ga0326721_10553887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	693	Open in IMG/M
3300033550\|Ga0247829_11284691	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300034009\|Ga0334944_037670	Not Available	924	Open in IMG/M
3300034030\|Ga0334952_064751	Not Available	765	Open in IMG/M
3300034221\|Ga0334937_167572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	609	Open in IMG/M
3300034221\|Ga0334937_228307	Not Available	515	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	54.79%
Environmental	Environmental	45.21%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	54.79%
Terrestrial	Environmental → Terrestrial	45.21%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	34.25%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.55%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	21.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.33%
Loam	Environmental → Terrestrial → Soil → Loam	7.53%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.48%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	2.05%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.37%
Sand	Environmental → Terrestrial → Soil → Sand	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	21.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.48%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.79%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.74%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	2.05%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.37%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.37%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.68%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.22%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	7.53%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.79%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.11%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.42%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.74%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.74%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.05%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	2.05%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.37%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.37%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.37%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.37%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.37%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.37%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.68%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.68%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.68%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.68%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300024426	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_5	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034009	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 40SMS	Environmental	Open in IMG/M
3300034030	Biocrust microbial communities from Mojave Desert, California, United States - 48SNC	Environmental	Open in IMG/M
3300034221	Biocrust microbial communities from Mojave Desert, California, United States - 33SMC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1179363981	3300002568	Soil	MTAWIALFAMTFLFALALRHGRAKEPPLPPGYDGERQLAELHALTAAYTTMRLP*
C688J35102_1204804662	3300002568	Soil	MTAWIALFAVTILFTLALRHGCAKEPPLPPGYDGERQLAELHALTAAYTPTRRP*
C688J35102_1207492583	3300002568	Soil	MTAWIVLFAVTVLFALALRHGRGKEPPLPPGYDGERQLAELHALTTACANVRLP*
Ga0063454_1005133982	3300004081	Soil	TLALRHGRPKEPPLPPDYDGERQLAELHALTTACANVRLP*
Ga0062589_1020294502	3300004156	Soil	MTAWITLFALTVLSALALRRTRPGQPSLPAGYDGERQLTELRALITTPSTD*
Ga0062595_1019680742	3300004479	Soil	MTAWITLFALTVLFALALRRTRPDQPCLPAGYDGERQLTELRALITTPSTD*
Ga0070676_115060311	3300005328	Miscanthus Rhizosphere	MPARLPVMTAWITLFALTVLFALALRRTRPDQPCLPAGYDGERQLTELRALITTPST
Ga0070683_1001758552	3300005329	Corn Rhizosphere	MTPWITLFALTVLFALALRHGRSQELPMPPGYDGERQLAELHELITARSPLRLP*
Ga0070683_1002461904	3300005329	Corn Rhizosphere	MTAWITLFALTVLSALALRRTRPDQPSLPAGYDGERQLTELRALITTPSTD*
Ga0070690_1003263902	3300005330	Switchgrass Rhizosphere	MTAWITLFALTVLFALALRHGRSQELPMPPGYDGERQLAELHELITARSPLRLP*
Ga0070670_1015245291	3300005331	Switchgrass Rhizosphere	MTAWIVLFALTVTFALALRPAHPKEPPLPPGHDGERQLAELRAMAIAGANTRFP*
Ga0068869_1001641362	3300005334	Miscanthus Rhizosphere	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARSPLRLP*
Ga0068869_1009520063	3300005334	Miscanthus Rhizosphere	MTAWIALFAVTVLFALALRHGRSKEPPLPPGYDGERQLAELHALTSACMTRPLP*
Ga0070666_109666581	3300005335	Switchgrass Rhizosphere	MTAWITLFALTVLSALALRRTRPDQPSLPAGYDGERQLTELRALITNPSTD*
Ga0070682_1002734853	3300005337	Corn Rhizosphere	PVMTAWITLFALTVLSALALRRTRPDQPSLPAGYDGERQLTELRALITTPSTD*
Ga0070660_1005970142	3300005339	Corn Rhizosphere	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHELITARSPLRLP*
Ga0070661_1005174211	3300005344	Corn Rhizosphere	LPVMTAWITLFALTVLSALALRRTRPDQPCLPAGYDGERQLTELRALITTPSTD*
Ga0070668_1006820241	3300005347	Switchgrass Rhizosphere	TVLSALALRRTRPDQPCLPAGYDGERQLTELRALITTPSTD*
Ga0070675_1016684671	3300005354	Miscanthus Rhizosphere	TVLSALALRRTRPDQPSLPAGYDGERQLTELRALITTPSTD*
Ga0070671_1017644392	3300005355	Switchgrass Rhizosphere	MTPWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHELITARSPLRLP*
Ga0070659_1005601811	3300005366	Corn Rhizosphere	ALTVLFALALRHGRPKEPPLPPGHDGERQLAELHALTAATMNPRLP*
Ga0068867_1001262474	3300005459	Miscanthus Rhizosphere	MPARLPVMTAWITLFALTVLSALALRRTRPDQPSLPAGYDGERQLTELRALITTPSTD*
Ga0068867_1009717773	3300005459	Miscanthus Rhizosphere	MTAWIVLFALTVMFALALRPAHPKEPPLPPGHDGQRQLAELRAMAIAGANTR
Ga0068853_1021358271	3300005539	Corn Rhizosphere	MPARLPVMTAWITLFALTVLSALALRRTRPDQPSLPAGYDGERQLTELRALITNPRTD*
Ga0070665_1006505062	3300005548	Switchgrass Rhizosphere	MTPWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARNPLRLP*
Ga0070665_1023117351	3300005548	Switchgrass Rhizosphere	AWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHELITARSPLRLP*
Ga0068854_1002436672	3300005578	Corn Rhizosphere	MTAWITLFALTVLFALALRRTRPDQPCLPAGYDGERQLTELRALITNPSTD*
Ga0068852_1013753541	3300005616	Corn Rhizosphere	TVLFALALRHGRPKEPPLPPGHDGERQLAELHALTAATMNPRLP*
Ga0068864_1019714141	3300005618	Switchgrass Rhizosphere	MTAWITLFALTVLSALAMRRTRPDQPSLPAGYDGERQLTELRALITTPSTD*
Ga0068851_103324752	3300005834	Corn Rhizosphere	MTAWIALFAVTVLFALALRHGRPKEPPLPPGHDGERQLAELHALTAATMNPRLP*
Ga0068858_1003468392	3300005842	Switchgrass Rhizosphere	MSARAVAAHPSFMTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARSPLRLP*
Ga0075430_1004780582	3300006846	Populus Rhizosphere	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARIPSAP*
Ga0075420_1003349691	3300006853	Populus Rhizosphere	MSARAVAAHPSFMAAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARIPSAP*
Ga0075429_1001090433	3300006880	Populus Rhizosphere	MSARAVAAHPSFMAAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARIP
Ga0075429_1005905782	3300006880	Populus Rhizosphere	MTAWITLFALTVLFVLALRHGRSKELPMPPGYDGERQRAELHALISARSPLRLP*
Ga0075424_1026561261	3300006904	Populus Rhizosphere	MAAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARNPVRLP*
Ga0105251_102905472	3300009011	Switchgrass Rhizosphere	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARIPPAP*
Ga0111539_128113832	3300009094	Populus Rhizosphere	MAAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAGRIPPAP*
Ga0105245_127552351	3300009098	Miscanthus Rhizosphere	MTAWIALFAVTVLFALALRHGRSKEPPLPPGYDGERQLAELHALNSACTTRPLP*
Ga0075418_114714931	3300009100	Populus Rhizosphere	LALRHGRSKELPMPPGYDGERQLAELHALIAARSPLRLP*
Ga0075418_125071462	3300009100	Populus Rhizosphere	TVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARIPSAP*
Ga0105243_112531281	3300009148	Miscanthus Rhizosphere	MTAWITLLALTVLFALALRHGRSKELPMPPGYDGERQLAELHALI
Ga0111538_118971213	3300009156	Populus Rhizosphere	MTAWIALFAVTVLFALALRHGRPKEPPLPPGHDGERQLAELHALTAATM
Ga0111538_135148891	3300009156	Populus Rhizosphere	MTPWITLFALTVLFALALRHGRSQELPMPPGYDGERQLAELHALISARSPLRLP*
Ga0105248_127008392	3300009177	Switchgrass Rhizosphere	MTAWITLFALTVLFALALRRTRPDQPSLPAGYDGERQLTELRALITTPSTD*
Ga0105238_104332753	3300009551	Corn Rhizosphere	SALALRRTRPDQPCLPAGYDGERQLTELRALITTPSTD*
Ga0126313_102820442	3300009840	Serpentine Soil	MTAWIALFAVTVLFALALRHGRAKEPPLPPGYDGERQLAELHALTAAYTTMRLP*
Ga0126313_111835591	3300009840	Serpentine Soil	RHGRPKEPPLPPDYDGERQLAELHALTAAATNTRLP*
Ga0126305_102722232	3300010036	Serpentine Soil	MTAWIALFAVTILFTLALRHGRPKEPPLPPGYDGERQLAELHALTAAATNTRLP*
Ga0126305_103072903	3300010036	Serpentine Soil	MTAWIALLAVAILFTLALRHGRPKEPPLPPDYDGERQLAELHALPAAATNTRLP*
Ga0126304_105051081	3300010037	Serpentine Soil	WIDFFAVTILFTLALRHGRPKEPPLPPGYDGERQLAELHALAAAATNTRLP*
Ga0126309_106786042	3300010039	Serpentine Soil	MTAWITLFALTVLFALALRHGRTKELPMPPGHDGERQLAELHAL
Ga0126310_100285194	3300010044	Serpentine Soil	MAAWIALFAVTILFTLALRHGRPKEPPMPPDYDGERQLAELHALTAAATNTRLP*
Ga0126310_115025621	3300010044	Serpentine Soil	FALTVLSALALRRTRPDQPSLPAGYDGERQLTELRALITTPSTD*
Ga0126311_102584743	3300010045	Serpentine Soil	MTAWIVLFALTVLFAMALRSGRLKDPPLPPGYDRERQLAELRALTAA
Ga0126306_102797681	3300010166	Serpentine Soil	MAAWIALFAVTILFTLALRHGRPKEPPLPPDYDGERQLAELHALTAAATNTRLP*
Ga0126306_111801292	3300010166	Serpentine Soil	MTAWIALFAVAILFALALRHGRPKEPPLPPDYDGERQLAELHALTA
Ga0134125_112240072	3300010371	Terrestrial Soil	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALISARIPPAP*
Ga0105239_127780601	3300010375	Corn Rhizosphere	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARNPLRLP*
Ga0134122_132774821	3300010400	Terrestrial Soil	MTPWITLFALTVLFALALRHGRSQGLPMPPGYDGERQLAELHELITARSPLRLP*
Ga0134123_135685812	3300010403	Terrestrial Soil	LRHGRSKELPMPPGYDGERQLAELHALIAARSPLRLP*
Ga0150985_1025332201	3300012212	Avena Fatua Rhizosphere	MTAWIALFAVTVLFALALRHGRPKEPPLPPGHDGERQLAELHALTAA
Ga0150985_1031259852	3300012212	Avena Fatua Rhizosphere	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARIPPTP*
Ga0150985_1098198145	3300012212	Avena Fatua Rhizosphere	MTAWIALFAVTVLFTLALRHGRSKEPPLPPGYDGERQLAELHALASGGVTAPLP*
Ga0150985_1148927672	3300012212	Avena Fatua Rhizosphere	LFALTVLFALALRHGRSKELPLPPGYDGERQLAELHALIAARKPLRLP*
Ga0150985_1163192623	3300012212	Avena Fatua Rhizosphere	MTGWIDLFAVTILFTLALRHGRPKEPPLPPGYDGERQLAELHALTAVRTNTRVP*
Ga0150985_1165707111	3300012212	Avena Fatua Rhizosphere	TAWIALFAVTVLFALALRHGRPEEPPLPPDHEGERQLAELRALTAATTNARLP*
Ga0150985_1168031321	3300012212	Avena Fatua Rhizosphere	LFTLALRHGRPKEPPLPPDYDGERQLAELHALTAAAANTPLP*
Ga0150984_1176248752	3300012469	Avena Fatua Rhizosphere	MTAWITLFALTVLSALAVRRTRPDQPSLPAGYDGERQLTELRALITTPSTD*
Ga0150984_1214655912	3300012469	Avena Fatua Rhizosphere	WIDLFAVTILFTLALRHGRPKEPPLPPGYDGERQLAELHALTAVRTNTRVP*
Ga0157291_103233441	3300012902	Soil	LTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARSPLRLP*
Ga0157371_108777851	3300013102	Corn Rhizosphere	MTAWIALFAVTVLFALALRHGRSKEPPLPPGYDGERQLAELHALTTACTNLRLPG*
Ga0157369_123237641	3300013105	Corn Rhizosphere	LPVMTAWITLFALTVLFALALRRTRPDQPCLPAGYDGERQLTELRALITTPSTD*
Ga0157372_108565801	3300013307	Corn Rhizosphere	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARIPPAA*
Ga0157372_109859132	3300013307	Corn Rhizosphere	MTAWIALFAVTVLFALALRHGRPKEPPLPPGHDGERQLAELHALTAATTNPRLP*
Ga0157375_105697112	3300013308	Miscanthus Rhizosphere	MPARLPVMTAWITLFALTVLSALALRRTRPDQPSLPAGYDGERQLTELRALITNPSTD*
Ga0157375_106103343	3300013308	Miscanthus Rhizosphere	MTPWITLFALTVLFALALRHGRSQGLPMPPGYDRERQLAELHELITARSPLRLP*
Ga0157380_104601232	3300014326	Switchgrass Rhizosphere	MTAWITLLALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARSPLRLP*
Ga0182001_103285492	3300014488	Soil	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALISARTHLRLP*
Ga0132257_1030954611	3300015373	Arabidopsis Rhizosphere	MTPWITLFALTVLFALALRHGRSRELPMPPGYDGERQLAELHELITARSPLRLP*
Ga0190266_109621792	3300017965	Soil	MTAWIDLFAVTILFTLALRHGRPKEPPLPPGYDGERQLAELHALT
Ga0190265_119742971	3300018422	Soil	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERLLAELHALVAARIPPAP
Ga0190275_100266143	3300018432	Soil	MTAWIALFAVTVLFALALRHGRAKEPPLPPGYDGERQLAELHALTAAYTPMRLP
Ga0190275_101433932	3300018432	Soil	MSARAVAAHPSRMTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARIPPAP
Ga0190275_106535552	3300018432	Soil	MTAWITLFALTVLFVLALRHGRSKELPMPPGYDGERQLAELHALISARCPLRLP
Ga0190275_113292161	3300018432	Soil	MTAWIALLAVTILFTLALRHGRPKEPPLPPGYDGERQLAELHALTMAAPNVRLP
Ga0190275_120594182	3300018432	Soil	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELQALIAARSPLRLP
Ga0190269_114828761	3300018465	Soil	MTAWMTLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARNPLRLP
Ga0190268_104971312	3300018466	Soil	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALVAARSPLRLP
Ga0190268_107629581	3300018466	Soil	MTALIVLFAVTVLFALALRPSRPKDPPLPAGYDGERQLAELRALTVAGPHH
Ga0190270_100637523	3300018469	Soil	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARIPPAP
Ga0190274_100976291	3300018476	Soil	AWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARIPPTP
Ga0190274_120122761	3300018476	Soil	MTAWITLFALTVLSALALRRTRPDQPSLPAGYDGERQLTELRALITTPSTD
Ga0190271_103728251	3300018481	Soil	TVLFVLALRHGRSKELPMPPGYDGERQLAELHALISARCPLRLP
Ga0190271_107201202	3300018481	Soil	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARSPLRLP
Ga0190273_100635202	3300018920	Soil	MTAWIALFAVTVLFSMALRHGCAKEPPLPPGYDGERQLAELHALAPAHTLTQLP
Ga0190273_103971362	3300018920	Soil	MTAWIALLALTILFTLALRHGRPKEPPLPTGYDGERQLAELHALTTAAPNVRLP
Ga0190273_104008942	3300018920	Soil	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARKPLRLP
Ga0190264_114228661	3300019377	Soil	MSAPGLPPRILLPMTAWIVLIAVTVVFALALRHGRPKEPQLPSGYDRERQLAELRALTAAGPIVRLP
Ga0190267_103864702	3300019767	Soil	AVAAHPSSMTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELQALIAARSPLRLP
Ga0196960_101585682	3300024426	Soil	MTTWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALISAQHPLRLP
Ga0207642_105863581	3300025899	Miscanthus Rhizosphere	MTPWITLFALTVLFALALRHGRSKELPMPPGHDGERQLAELHALIAARNPLRLP
Ga0207643_110985691	3300025908	Miscanthus Rhizosphere	MTPWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARSPLRLP
Ga0207671_111226161	3300025914	Corn Rhizosphere	MTAWITLFALTVLSALALRRTRPDQPCLPAGYDGERQLTELRALITNPSTD
Ga0207662_104676522	3300025918	Switchgrass Rhizosphere	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHELITARSPLRLP
Ga0207657_111747521	3300025919	Corn Rhizosphere	MAAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARIPPAA
Ga0207706_117244691	3300025933	Corn Rhizosphere	PVMTAWITLFALTVLFALALRRTRPDQPCLPAGYDGERQLTELRALITTPSTD
Ga0207709_101013305	3300025935	Miscanthus Rhizosphere	MPARLPVMTAWITLFALTVLSALALRRTRPDQPSLPAGYDGERQLTELRALITNPSTD
Ga0207709_104743921	3300025935	Miscanthus Rhizosphere	MTPWITLFALTVLFALALRHGRSQELPMPPGYDGERQLAELHELITARSPLRLP
Ga0207711_115543022	3300025941	Switchgrass Rhizosphere	MTAWITLFALTVLFGLALRHGRSKELPMPPGYDGERQLAELHALIAARNPLRLP
Ga0207689_104472222	3300025942	Miscanthus Rhizosphere	MTAWIALFAVTVLFALALRHGRPKEPPLPPGHDGERQLAELHALTAATMNPRLP
Ga0207661_106179641	3300025944	Corn Rhizosphere	TPWITLFALTVLFALALRHGRSQELPMPPGYDGERQLAELHELITARSPLRLP
Ga0207712_112835291	3300025961	Switchgrass Rhizosphere	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARS
Ga0207668_109324101	3300025972	Switchgrass Rhizosphere	ALALRHGRSKELPMPPGYDGERQLAELHALIAARNPLRLP
Ga0207640_105738313	3300025981	Corn Rhizosphere	TLFALTVLFALALRRTRPDQPCLPAGYDGERQLTELRALITNPSTD
Ga0207658_117578182	3300025986	Switchgrass Rhizosphere	MPARLPVMTAWITLFALTVLSALALRRTRPDQPSLPAGYDGERQLTELRALITTPSTD
Ga0207677_102535842	3300026023	Miscanthus Rhizosphere	MTAWITLFALTVLFALALRRTRPDQPCLPAGYDGERQLTELRALITNPSTD
Ga0207703_110921421	3300026035	Switchgrass Rhizosphere	WIALFAVTVLFALALRHGRSKEPPLPPGYDGERQLAELHALNSACTTRPLP
Ga0207678_112987231	3300026067	Corn Rhizosphere	LALRHGRSKQPTLPPGYDGERQLAELHALNSACTTRPLP
Ga0207708_112075891	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	AWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARSPLRLP
Ga0207702_103399252	3300026078	Corn Rhizosphere	MTAWITLFALTVLSALALRRTRPDQPSLPAGYDGERQLSELRALITTPLTD
Ga0207676_120729401	3300026095	Switchgrass Rhizosphere	MPARLPVMTAWITLFALTVLSALAMRRTRPDQPSLPAGYDGERQLTELRALITNPST
Ga0207674_101818083	3300026116	Corn Rhizosphere	MSARAVAAHPSFMTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARSPLRLP
Ga0207683_101396223	3300026121	Miscanthus Rhizosphere	LFALALRHGRSKELPMPPGYDGERQLAELHALIAARSPLRLP
Ga0207683_110385912	3300026121	Miscanthus Rhizosphere	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALI
Ga0209481_101423752	3300027880	Populus Rhizosphere	MSARAVAAHPSFMAAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARIPSAP
Ga0207428_110563441	3300027907	Populus Rhizosphere	MAAWITLFALTVLFALALRHGRPKEPPLPPGHDGERQLAELHALTAATMNPRLP
Ga0268265_103043373	3300028380	Switchgrass Rhizosphere	MTAWITLFALTVLFALALRRTRPDQPCLPAGYDGERQLTELRALITTPSTD
Ga0247822_112954041	3300028592	Soil	MTAWIALFAVTVLFALALRHGRSKEPPLPPGYDGERQLAELHALNSA
Ga0247821_102199853	3300028596	Soil	FAVTVLFALALRHGRSKEPPLPPGYDGERQLAELHALTSACMTRPLP
Ga0247820_102469943	3300028597	Soil	TLFCMTAWIALFAVTVLFALALRHGRSKQPTLPPGYDGERQLAELHALTSACMTRPLP
Ga0247820_105207341	3300028597	Soil	MTAWIALFAVTVLFALALRHGRSKQPTLPPGYDGERQLAELHALNSACTTRPLP
Ga0247820_112162051	3300028597	Soil	MTAWITLFALTVLFALALRHGRSKELPMPSGYDGERQLAELHALIAARIPPAP
Ga0247824_108048542	3300028809	Soil	RPPCDHLASLMTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARIPPAP
Ga0307294_101871122	3300028810	Soil	MTAWITLFALTVLFALALRHGRSKELPMPPAYDGERQLAELHALIAARIPPAP
Ga0308197_103249512	3300031093	Soil	MTAWITLFALTVLSALALRRTRPDQPCLAAGYDGERQLTELRALITTPSTD
Ga0307409_1027631282	3300031995	Rhizosphere	MTAWIVLAAVALLFALALRHGASKEPSLPPGYEGERQLAELRALIASRTTVRLP
Ga0307416_1019530801	3300032002	Rhizosphere	MTALIVLFAVTVLFTLALRPSRPKAPPLPAGYDGERQLAELRALAVASPRH
Ga0326721_100381591	3300032080	Soil	MSARTVAAHPSLMTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARITPTP
Ga0326721_104080431	3300032080	Soil	SRMTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARIPPAP
Ga0326721_105538872	3300032080	Soil	MTAWIALFAVTVLFALALRHGRAKEPPLPPGHDGERQLAELHALTAAYTPMRLP
Ga0247829_112846912	3300033550	Soil	RVVAPLTSYSMTPWITLFALTVLFALALRHGRSQELPMPPGYDGERQLAELHELITARSPLRLP
Ga0334944_037670_77_241	3300034009	Sub-Biocrust Soil	MTAWIALLAVTILFTLALRHGRPKEPPLPPGYDGERQLAELHALTTAAPNVRLP
Ga0334952_064751_488_643	3300034030	Biocrust	MDRPSAVTILFTLALRHGRPNEPPLPPGYDGERQLAELHALTTAAPNVRLP
Ga0334937_167572_3_155	3300034221	Biocrust	MTAWITLFALTVLFALALRHGRSKELPMPPGYDGERQLAELHALIAARRPL
Ga0334937_228307_96_260	3300034221	Biocrust	MTAWIALLAVTILFTLALRHGRPKEPPLPAGYDGDRQLAELHALTTAAPNVRLP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F049466

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences