Metagenome / Metatranscriptome Family F048549

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F048549
Family Type	Metagenome / Metatranscriptome
Number of Sequences	148
Average Sequence Length	39 residues
Representative Sequence	MTVTVTPRPPVATAAHAFTLPTVRELPPVARPGTFDSTW
Number of Associated Samples	85
Number of Associated Scaffolds	148

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	55.41 %
% of genes near scaffold ends (potentially truncated)	29.05 %
% of genes from short scaffolds (< 2000 bps)	87.16 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.054 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (32.432 % of family members)
Environment Ontology (ENVO)	Unclassified (40.541 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (60.135 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 4.48% β-sheet: 0.00% Coil/Unstructured: 95.52%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.20
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 148 Family Scaffolds
PF01035	DNA_binding_1	29.73
PF00311	PEPcase	22.30
PF00171	Aldedh	5.41
PF03069	FmdA_AmdA	2.70
PF00903	Glyoxalase	1.35
PF00027	cNMP_binding	1.35
PF08031	BBE	1.35
PF01590	GAF	1.35
PF02417	Chromate_transp	1.35
PF13185	GAF_2	1.35
PF13191	AAA_16	0.68
PF00196	GerE	0.68
PF00353	HemolysinCabind	0.68
PF13602	ADH_zinc_N_2	0.68
PF02870	Methyltransf_1N	0.68
PF00890	FAD_binding_2	0.68
PF03992	ABM	0.68
PF12706	Lactamase_B_2	0.68
PF00005	ABC_tran	0.68
PF00403	HMA	0.68
PF03372	Exo_endo_phos	0.68
PF00248	Aldo_ket_red	0.68
PF07995	GSDH	0.68
PF04234	CopC	0.68
PF13384	HTH_23	0.68
PF16655	PhoD_N	0.68
PF00480	ROK	0.68
PF11139	SfLAP	0.68
PF13649	Methyltransf_25	0.68
PF12697	Abhydrolase_6	0.68
PF07690	MFS_1	0.68
PF08734	GYD	0.68
PF01370	Epimerase	0.68
PF13411	MerR_1	0.68
PF13473	Cupredoxin_1	0.68

COG ID	Name	Functional Category	% Frequency in 148 Family Scaffolds
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	30.41
COG3695	Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain	Transcription [K]	29.73
COG2352	Phosphoenolpyruvate carboxylase	Energy production and conversion [C]	22.30
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	5.41
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	5.41
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	5.41
COG2421	Acetamidase/formamidase	Energy production and conversion [C]	2.70
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	1.35
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.35
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	1.35
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.68
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.68
COG2372	Copper-binding protein CopC (methionine-rich)	Inorganic ion transport and metabolism [P]	0.68
COG2608	Copper chaperone CopZ	Inorganic ion transport and metabolism [P]	0.68
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.68

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.05 %
Unclassified	root	N/A	20.95 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.05 %
Unclassified	root	N/A	20.95 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.05 %
Unclassified	root	N/A	20.95 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	27.03 %
Unclassified	root	N/A	20.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.38 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.70 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.68 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	21.62 %
Unclassified	root	N/A	20.95 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2.70 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.03 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.35 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.68 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.38 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3.38 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	2.03 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.35 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	1.35 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.68 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.68 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.68 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.95 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.70 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	2.03 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	2.03 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1.35 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	1.35 %
Nakamurellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales	0.68 %
Planctomycetes bacterium Pan216	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	0.68 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.68 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.68 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.95 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	2.70 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	2.03 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	2.03 %
Nordella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Nordella	1.35 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1.35 %
Iamiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae	0.68 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.68 %
Nakamurellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae	0.68 %
Planctomycetes bacterium Pan216	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	0.68 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.95 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2.70 %
Agromyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Agromyces	2.03 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	2.03 %
unclassified Nordella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Nordella → unclassified Nordella	1.35 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1.35 %
Actinomarinicola	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Actinomarinicola	0.68 %
Nakamurella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	0.68 %
unclassified Clostridiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae	0.68 %
Planctomycetes bacterium Pan216	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	0.68 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.95 %
Agromyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Agromyces	2.03 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	2.03 %
Nordella sp. HKS 07	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Nordella → unclassified Nordella → Nordella sp. HKS 07	1.35 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1.35 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1.35 %
Actinomarinicola tropica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Actinomarinicola → Actinomarinicola tropica	0.68 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	0.68 %
Clostridiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	0.68 %
Nakamurella panacisegetis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella panacisegetis	0.68 %
Planctomycetes bacterium Pan216	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	0.68 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.95 %
Agromyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Agromyces	2.03 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	2.03 %
Nordella sp. HKS 07	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Nordella → unclassified Nordella → Nordella sp. HKS 07	1.35 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1.35 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1.35 %
Solirubrobacter sp. CPCC 204708	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. CPCC 204708	0.68 %
Actinomarinicola tropica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Actinomarinicola → Actinomarinicola tropica	0.68 %
Clostridiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	0.68 %
Nakamurella panacisegetis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella panacisegetis	0.68 %
Planctomycetes bacterium Pan216	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	0.68 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.68 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002568\|C688J35102_119175051	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	649	Open in IMG/M
3300002568\|C688J35102_119349964	Not Available	678	Open in IMG/M
3300002568\|C688J35102_120123629	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300003992\|Ga0055470_10132753	All Organisms → cellular organisms → Bacteria → Terrabacteria group	641	Open in IMG/M
3300004081\|Ga0063454_101979851	Not Available	515	Open in IMG/M
3300004463\|Ga0063356_105835029	Not Available	528	Open in IMG/M
3300005093\|Ga0062594_100254635	All Organisms → cellular organisms → Bacteria	1288	Open in IMG/M
3300005356\|Ga0070674_101265405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	657	Open in IMG/M
3300005367\|Ga0070667_101491613	Not Available	635	Open in IMG/M
3300005459\|Ga0068867_101528971	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	622	Open in IMG/M
3300005530\|Ga0070679_100801802	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300005543\|Ga0070672_102034547	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300005547\|Ga0070693_101485621	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	529	Open in IMG/M
3300005563\|Ga0068855_100863636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	958	Open in IMG/M
3300005564\|Ga0070664_102161892	Not Available	528	Open in IMG/M
3300005615\|Ga0070702_100401271	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300005840\|Ga0068870_10393674	Not Available	900	Open in IMG/M
3300005842\|Ga0068858_100197064	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1904	Open in IMG/M
3300005937\|Ga0081455_10242974	Not Available	1322	Open in IMG/M
3300005937\|Ga0081455_10291867	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300005981\|Ga0081538_10000242	All Organisms → cellular organisms → Bacteria	61803	Open in IMG/M
3300005981\|Ga0081538_10034267	All Organisms → cellular organisms → Bacteria	3359	Open in IMG/M
3300005981\|Ga0081538_10073825	All Organisms → cellular organisms → Bacteria	1861	Open in IMG/M
3300005981\|Ga0081538_10112138	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300005981\|Ga0081538_10152607	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300005981\|Ga0081538_10175215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	928	Open in IMG/M
3300005981\|Ga0081538_10176639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Agromyces	921	Open in IMG/M
3300005985\|Ga0081539_10019896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	4571	Open in IMG/M
3300005985\|Ga0081539_10355540	Not Available	615	Open in IMG/M
3300006046\|Ga0066652_100016105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	4997	Open in IMG/M
3300006046\|Ga0066652_100247832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1558	Open in IMG/M
3300006058\|Ga0075432_10260219	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300006169\|Ga0082029_1782690	All Organisms → cellular organisms → Bacteria	2258	Open in IMG/M
3300006196\|Ga0075422_10394051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	611	Open in IMG/M
3300006844\|Ga0075428_100092790	All Organisms → cellular organisms → Bacteria	3291	Open in IMG/M
3300006844\|Ga0075428_100179597	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2291	Open in IMG/M
3300006844\|Ga0075428_102254274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	561	Open in IMG/M
3300006845\|Ga0075421_102190600	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300006880\|Ga0075429_101554948	Not Available	575	Open in IMG/M
3300006969\|Ga0075419_11178838	Not Available	564	Open in IMG/M
3300007004\|Ga0079218_10231554	All Organisms → cellular organisms → Bacteria	1440	Open in IMG/M
3300007004\|Ga0079218_11288443	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300007004\|Ga0079218_12093383	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300009094\|Ga0111539_10282701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1931	Open in IMG/M
3300009094\|Ga0111539_10448199	All Organisms → cellular organisms → Bacteria	1503	Open in IMG/M
3300009094\|Ga0111539_10937340	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300009094\|Ga0111539_11016630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	964	Open in IMG/M
3300009094\|Ga0111539_11255952	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300009100\|Ga0075418_10307837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1689	Open in IMG/M
3300009100\|Ga0075418_13159294	Not Available	502	Open in IMG/M
3300009147\|Ga0114129_11649344	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300009156\|Ga0111538_10889778	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300009157\|Ga0105092_10213878	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300009157\|Ga0105092_10746183	Not Available	571	Open in IMG/M
3300009162\|Ga0075423_13149970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Nordella → unclassified Nordella → Nordella sp. HKS 07	505	Open in IMG/M
3300009551\|Ga0105238_10265061	All Organisms → cellular organisms → Bacteria	1698	Open in IMG/M
3300009553\|Ga0105249_10936546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	934	Open in IMG/M
3300010037\|Ga0126304_10943814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Actinomarinicola → Actinomarinicola tropica	587	Open in IMG/M
3300010038\|Ga0126315_10147668	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1390	Open in IMG/M
3300010040\|Ga0126308_10245942	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300010042\|Ga0126314_10572321	Not Available	823	Open in IMG/M
3300010042\|Ga0126314_10812662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Agromyces	688	Open in IMG/M
3300010042\|Ga0126314_11372560	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	531	Open in IMG/M
3300010044\|Ga0126310_11687263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Nordella → unclassified Nordella → Nordella sp. HKS 07	526	Open in IMG/M
3300010045\|Ga0126311_11425225	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300010371\|Ga0134125_10492600	All Organisms → cellular organisms → Bacteria	1358	Open in IMG/M
3300010396\|Ga0134126_11477027	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300010399\|Ga0134127_11344378	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300010401\|Ga0134121_12604308	Not Available	549	Open in IMG/M
3300010403\|Ga0134123_10551605	Not Available	1097	Open in IMG/M
3300010403\|Ga0134123_11218887	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300010403\|Ga0134123_12456350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	587	Open in IMG/M
3300012469\|Ga0150984_100621498	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300012469\|Ga0150984_110391618	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300014311\|Ga0075322_1170536	All Organisms → cellular organisms → Bacteria → Terrabacteria group	544	Open in IMG/M
3300015374\|Ga0132255_104311780	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300017965\|Ga0190266_11015308	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300018061\|Ga0184619_10212786	Not Available	889	Open in IMG/M
3300018422\|Ga0190265_10043334	All Organisms → cellular organisms → Bacteria	3861	Open in IMG/M
3300018422\|Ga0190265_10077332	All Organisms → cellular organisms → Bacteria	3031	Open in IMG/M
3300018422\|Ga0190265_10097990	All Organisms → cellular organisms → Bacteria	2738	Open in IMG/M
3300018422\|Ga0190265_10113061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2575	Open in IMG/M
3300018422\|Ga0190265_10129988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2424	Open in IMG/M
3300018422\|Ga0190265_10203633	All Organisms → cellular organisms → Bacteria	1992	Open in IMG/M
3300018422\|Ga0190265_10330070	All Organisms → cellular organisms → Bacteria	1606	Open in IMG/M
3300018422\|Ga0190265_10413970	All Organisms → cellular organisms → Bacteria	1448	Open in IMG/M
3300018422\|Ga0190265_10923119	All Organisms → cellular organisms → Bacteria → Terrabacteria group	995	Open in IMG/M
3300018422\|Ga0190265_11053976	Not Available	934	Open in IMG/M
3300018422\|Ga0190265_11147996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	896	Open in IMG/M
3300018422\|Ga0190265_11574257	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300018422\|Ga0190265_11659927	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300018422\|Ga0190265_11664098	Not Available	749	Open in IMG/M
3300018422\|Ga0190265_11839926	Not Available	713	Open in IMG/M
3300018422\|Ga0190265_12541552	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300018422\|Ga0190265_12680374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	595	Open in IMG/M
3300018422\|Ga0190265_13658342	Not Available	513	Open in IMG/M
3300018422\|Ga0190265_13722379	Not Available	508	Open in IMG/M
3300018429\|Ga0190272_10510886	Not Available	1024	Open in IMG/M
3300018429\|Ga0190272_11367075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella panacisegetis	709	Open in IMG/M
3300018429\|Ga0190272_11605528	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300018429\|Ga0190272_11935876	All Organisms → cellular organisms → Bacteria → Terrabacteria group	621	Open in IMG/M
3300018432\|Ga0190275_10133634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2260	Open in IMG/M
3300018432\|Ga0190275_10668158	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300018465\|Ga0190269_11402847	Not Available	567	Open in IMG/M
3300018466\|Ga0190268_10031517	All Organisms → cellular organisms → Bacteria	1886	Open in IMG/M
3300018466\|Ga0190268_10228349	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300018469\|Ga0190270_11659069	Not Available	692	Open in IMG/M
3300018469\|Ga0190270_13441597	Not Available	502	Open in IMG/M
3300018476\|Ga0190274_12225108	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300018481\|Ga0190271_10078023	All Organisms → cellular organisms → Bacteria	2958	Open in IMG/M
3300018481\|Ga0190271_10274315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1734	Open in IMG/M
3300019255\|Ga0184643_1430085	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300019279\|Ga0184642_1425344	Not Available	520	Open in IMG/M
3300019377\|Ga0190264_10538606	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300019377\|Ga0190264_12037375	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300019377\|Ga0190264_12220798	Not Available	512	Open in IMG/M
3300022756\|Ga0222622_10263409	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300022756\|Ga0222622_10359296	Not Available	1017	Open in IMG/M
3300024430\|Ga0196962_10015219	All Organisms → cellular organisms → Bacteria	2301	Open in IMG/M
3300024430\|Ga0196962_10046198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. CPCC 204708	1314	Open in IMG/M
3300024430\|Ga0196962_10059407	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300024430\|Ga0196962_10233531	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300025935\|Ga0207709_10162691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1558	Open in IMG/M
3300025937\|Ga0207669_11016818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	697	Open in IMG/M
3300027636\|Ga0214469_1056793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1206	Open in IMG/M
3300027907\|Ga0207428_10070450	All Organisms → cellular organisms → Bacteria	2748	Open in IMG/M
3300027907\|Ga0207428_10155741	All Organisms → cellular organisms → Bacteria	1738	Open in IMG/M
3300027907\|Ga0207428_11231219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	520	Open in IMG/M
3300027909\|Ga0209382_11861960	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300028705\|Ga0307276_10153194	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300028719\|Ga0307301_10092436	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300028744\|Ga0307318_10050107	All Organisms → cellular organisms → Bacteria	1382	Open in IMG/M
3300028784\|Ga0307282_10427364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	642	Open in IMG/M
3300028796\|Ga0307287_10330559	All Organisms → cellular organisms → Bacteria → Terrabacteria group	575	Open in IMG/M
3300028814\|Ga0307302_10362741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Agromyces	715	Open in IMG/M
3300028814\|Ga0307302_10571601	Not Available	562	Open in IMG/M
3300028876\|Ga0307286_10290003	Not Available	604	Open in IMG/M
3300030006\|Ga0299907_10260754	All Organisms → cellular organisms → Bacteria	1422	Open in IMG/M
3300030619\|Ga0268386_10073863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2663	Open in IMG/M
3300030785\|Ga0102757_11106154	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300031152\|Ga0307501_10281193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	506	Open in IMG/M
3300031228\|Ga0299914_10425013	All Organisms → cellular organisms → Bacteria	1156	Open in IMG/M
3300031901\|Ga0307406_10061976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2418	Open in IMG/M
3300031901\|Ga0307406_10244563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1348	Open in IMG/M
3300031901\|Ga0307406_10685585	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300031901\|Ga0307406_11345199	Not Available	625	Open in IMG/M
3300032002\|Ga0307416_100167336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2041	Open in IMG/M
3300032126\|Ga0307415_100673757	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	62.84%
Host-Associated	Host-Associated	37.16%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.43%
Plants	Host-Associated → Plants	37.16%
Aquatic	Environmental → Aquatic	5.41%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.43%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.68%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.76%
Roots	Host-Associated → Plants → Roots	4.73%
Freshwater	Environmental → Aquatic → Freshwater	2.70%
Sediment	Environmental → Aquatic → Sediment	2.03%
Marine	Environmental → Aquatic → Marine	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.95%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.08%
Loam	Environmental → Terrestrial → Soil → Loam	4.73%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	4.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.73%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.70%
Sand	Environmental → Terrestrial → Soil → Sand	2.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.03%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.68%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.08%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	4.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.73%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.70%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.70%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.70%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	2.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.03%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.03%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.35%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.35%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.68%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	32.43%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.86%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	5.41%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.73%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	4.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.05%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	2.70%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.03%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.03%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.35%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.35%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.35%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.35%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.35%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.68%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.68%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.68%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.68%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.68%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.68%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.68%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003992	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D1	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300014311	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024430	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027636	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57 HiSeq	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300030785	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 5C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1191750512	3300002568	Soil	MTIVVTPRPPISAAAHVFSMPVVRELPPVQRPGMFDTTW*
C688J35102_1193499642	3300002568	Soil	MTLTVTPRPPVASTAHAFSLPTVREIPPVQRPGTFSSIW*
C688J35102_1201236292	3300002568	Soil	LEMPRRWSIRAMTIVVTPRPPIAAAHAYSTPIVREIPPVQRPGMFDATW*
Ga0055470_101327531	3300003992	Natural And Restored Wetlands	VTVTVTPRPPVASTAHAFSLPVAREIPPVVRPGMFSSTW*
Ga0063454_1019798511	3300004081	Soil	AGAKGLLPMTLTVTPRPPVASTAHAFSLPTVREIPPVQRPGTFSSIW*
Ga0063356_1058350291	3300004463	Arabidopsis Thaliana Rhizosphere	FAVTVTITSRVPVATAHVYTRPTVRELPPLPRPGTFDSTW*
Ga0062594_1002546353	3300005093	Soil	LEMSHRWSIRAMTIVVTPRPPIAAAHVYSTPIVREIPPVQRPGMFDATW*
Ga0070674_1012654052	3300005356	Miscanthus Rhizosphere	TAHPHPTMSPLPTPRPPAHRHVYVAAVVRELPPVSRPGQFASTW*
Ga0070667_1014916131	3300005367	Switchgrass Rhizosphere	LEMSHRWSIRTMTIIVTPRPPIAAAHVYSTPIVREIPPVQRPGMFDATW*
Ga0068867_1015289712	3300005459	Miscanthus Rhizosphere	MTIVVTPRRPIAAAEHVFTTPVVRELPPVQRPGMYDSTW*
Ga0070679_1008018021	3300005530	Corn Rhizosphere	MTIVVTPRPPIAAAAHAFSTPVVRELPPVQRPGMFDTTW*
Ga0070672_1020345472	3300005543	Miscanthus Rhizosphere	MTIVVTPRPPIAAAHVYSTPIVREIPPVQRPGMFDATW*
Ga0070693_1014856211	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MTIVVTPRPPIAAAAHVFTTPVVRELPPVQRPGMYDSTW*
Ga0068855_1008636361	3300005563	Corn Rhizosphere	AAAKGLPPVTVTVTPRPPVASTAHAFSLPVVRELPPVVRPGTFSSTW*
Ga0070664_1021618922	3300005564	Corn Rhizosphere	MSPLPTPRPPAHRHVYVAAVVRELPPVSRPGQFASTW*
Ga0070702_1004012713	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	AMTIVVTPRPPIAAAHVYSTPIVREIPPVQRPGMFDATW*
Ga0068870_103936743	3300005840	Miscanthus Rhizosphere	MTVVAPRPPIAAATHVFSTPVVRELPPVQRPGMFDSTW*
Ga0068858_1001970643	3300005842	Switchgrass Rhizosphere	VTVTVTPRPPVASTAHAFSLPVVRELPPVVRPGTFSSTW*
Ga0081455_102429743	3300005937	Tabebuia Heterophylla Rhizosphere	VTVTVTPRRPAATAHAFSSPTVREIPPVQRPGTFDSTW*
Ga0081455_102918671	3300005937	Tabebuia Heterophylla Rhizosphere	MSPIVTPRPPVSAQHAFTTPVVRELPPVYRPGTFDSTW*
Ga0081538_1000024249	3300005981	Tabebuia Heterophylla Rhizosphere	MSMTVTVTPRPPVATAAHAFTLPTVRELPPVARPGTFDSTW*
Ga0081538_100342674	3300005981	Tabebuia Heterophylla Rhizosphere	MTVVAPRPPIAAATHVFSTPIVRELPPVQRPGMFDSTW*
Ga0081538_100738252	3300005981	Tabebuia Heterophylla Rhizosphere	MTVTVTPRPPVATAAHAFTLPTVRELPPVARPGTFDSTW*
Ga0081538_101121381	3300005981	Tabebuia Heterophylla Rhizosphere	ARASIRVVTVTVTPRPPAAAAHAFSLPLVREIPPVQRPGTFDSTW*
Ga0081538_101526072	3300005981	Tabebuia Heterophylla Rhizosphere	MSMTVTITPRPPVATAGHAFTLPVVRELPPVARPGTFDSTW*
Ga0081538_101752154	3300005981	Tabebuia Heterophylla Rhizosphere	VTVTVTPRRPAAAAHAFSLPTVREIPPVPRPGTFASTW*
Ga0081538_101766391	3300005981	Tabebuia Heterophylla Rhizosphere	VTATVTPRPPVATTAHAFQIPTVREIPPVPRPGTFSSIW*
Ga0081539_100198965	3300005985	Tabebuia Heterophylla Rhizosphere	MTIVVTPRPPAAAHAFSTPVVRELPPVQRPGMFDATW*
Ga0081539_103555402	3300005985	Tabebuia Heterophylla Rhizosphere	MTVTITPRPPVASAAHAFSLPTVREIPPVQRPGTFSSTW*
Ga0066652_1000161056	3300006046	Soil	MTIVVTPRPPISAAAHVFSMPVVRELPPVRRPGMFDTTW*
Ga0066652_1002478322	3300006046	Soil	VTVTVTPRPPVASTAHAFSLPTVREIPPVVRPGTFSSSW*
Ga0075432_102602192	3300006058	Populus Rhizosphere	AAGAAAEAMTVVVTPRPPIAAAHAFTTPVVREMPPVHRPGTFDSTW*
Ga0082029_17826902	3300006169	Termite Nest	MSPTVTPRPLVSAQHAYTTPVVRELPPVYRPGTFDSTW*
Ga0075422_103940512	3300006196	Populus Rhizosphere	VTVTVTPRRPAAAHAFSLPTVREIPPVQRPGAFDSTW*
Ga0075428_1000927902	3300006844	Populus Rhizosphere	MTVVAPRPPIAAATHAFSTPVVRELPPVQRPGMFDSTW*
Ga0075428_1001795972	3300006844	Populus Rhizosphere	VTVTVTPRRPAASSPRFFTLPSVRELPPVQRPGTYASTW*
Ga0075428_1022542742	3300006844	Populus Rhizosphere	MNSVTVTVTPRRPAAAHAFSLPTVREIPPVQRPGAFDSTW*
Ga0075421_1021906002	3300006845	Populus Rhizosphere	MSMTVTVTPRPPVATAHAFTLPVVRELPPVARPGTFDSTW*
Ga0075429_1015549483	3300006880	Populus Rhizosphere	VTVTVTPRRPVATAHAFALPVVREIPPVQRPGTFSSTW*
Ga0075419_111788382	3300006969	Populus Rhizosphere	VTVTVTPRRPALAAHAFSSPTVREIPPVQRPGTFDSTW*
Ga0079218_102315542	3300007004	Agricultural Soil	MTVTITPRPPVAAGHAFTLPVVRELPPVARPGTFDSTW*
Ga0079218_112884433	3300007004	Agricultural Soil	EPAMTVTITPRPPASGAPHVFSTPTVRELPPVARPGTFAATW*
Ga0079218_120933832	3300007004	Agricultural Soil	MTVTVTPRPPVRTAAHAFTLPTVRELPPVARPGTFASTW*
Ga0111539_102827013	3300009094	Populus Rhizosphere	VTVTVTPRNPAATARHAFSLPTVRELPPVARPGTFASTW*
Ga0111539_104481992	3300009094	Populus Rhizosphere	MSPIVTPRPPVATHAYTLPVVRELPPVSRPGTFDSTW*
Ga0111539_109373401	3300009094	Populus Rhizosphere	MTVVVTPRPPIAAAHAFTTPVVREMPPVHRPGTFDSTW*
Ga0111539_110166301	3300009094	Populus Rhizosphere	SIPAMNSVTVTVTPRRPAAAHAFSLPTVREIPPVQRPGAFDSTW*
Ga0111539_112559522	3300009094	Populus Rhizosphere	MTVTVTPRPPVATAGHAFTLPVVRELPPVARPGTFDSTW*
Ga0075418_103078371	3300009100	Populus Rhizosphere	MTVVVTPRPPIAAAHAFTTPVVREMPPVHRPGTFDST
Ga0075418_131592941	3300009100	Populus Rhizosphere	GLPVTVTVTPRRPALAAHAFSSPTVREIPPVQRPGTFDSTW*
Ga0114129_116493442	3300009147	Populus Rhizosphere	MTAPPRPRITAAPHAYTIPVVRELPPVQRPGMFDTTW*
Ga0111538_108897782	3300009156	Populus Rhizosphere	MTVTVTPRPPVATAGHAFTLPVVREMPPVARPGMFDSTW*
Ga0105092_102138783	3300009157	Freshwater Sediment	SLRVTANERVPPMSPTVTPRPPVSAQHAFSTPVVRELPPVYRPGTFDSTW*
Ga0105092_107461833	3300009157	Freshwater Sediment	VTVTITPRRPAAAAHAFSFPTVREIPPVQRPGMFDS
Ga0075423_131499701	3300009162	Populus Rhizosphere	MTIVVTPRPPIAAAHVYSTPIVREIPPVQRPGLFDSTW*
Ga0105238_102650612	3300009551	Corn Rhizosphere	MTIVVTPRPPIAAAHAYSTPIVREIPPVQRPGMFDATW*
Ga0105249_109365463	3300009553	Switchgrass Rhizosphere	AAKAAMTIVVTPRPPITAAAHAYSTPVVRELPPVQRPGMFDTTW*
Ga0126304_109438141	3300010037	Serpentine Soil	VTITPRPPVATAHAYSLPVVREIPPVQRPGTFSATW*
Ga0126315_101476684	3300010038	Serpentine Soil	MTVLAPRPPIAAATHSFSTPVVRELPPVQRPGMFDSTW*
Ga0126308_102459421	3300010040	Serpentine Soil	RLPAGSLVLVTATVTPRPPVSTTAHAFQLPTVREIPPVPRPGMFSSTW*
Ga0126314_105723211	3300010042	Serpentine Soil	VTVTPRRPAASSPRYFTVPTVRELPPVARPGTYASTW*
Ga0126314_108126621	3300010042	Serpentine Soil	SCIVTVTVTPRPPVANTAHAFTLPNVREIPPVFRPGTFSSTW*
Ga0126314_113725601	3300010042	Serpentine Soil	MTIVVTPRPPLAAATHVFSTPVVRELPPVPRPGTFDFTW*
Ga0126310_116872632	3300010044	Serpentine Soil	MTVLAPRPPIAAAAHTFSIPVVRELPPVQRPGMFDSTW*
Ga0126311_114252252	3300010045	Serpentine Soil	MTVLAPRPPIAAAAHTFSIPVVRELPPVQRPGTFDSTW*
Ga0134125_104926003	3300010371	Terrestrial Soil	MTIVVTPRPPIAAAAHTFSTPVVRELPPVQRPGMFDTTW*
Ga0134126_114770273	3300010396	Terrestrial Soil	VTPRPPIAAAHAFSTPVVRELPPVQRPGMFDTTW*
Ga0134127_113443783	3300010399	Terrestrial Soil	MTIVVTPRPPIAAAAHVFTTPVVRELPPVQRPGMFDSTW*
Ga0134121_126043082	3300010401	Terrestrial Soil	MTIVVTPRPPIAAAAHAFSTPVVRELPPVQRPGMFDSTW*
Ga0134123_105516052	3300010403	Terrestrial Soil	TVTPRPPAAITAHAFSLPTVREIPPVPRPGTFSSAW*
Ga0134123_112188873	3300010403	Terrestrial Soil	VVTPRPPIAAAHVYSTPIVREIPPVQRPGMFDATW*
Ga0134123_124563502	3300010403	Terrestrial Soil	MTVVAPRPPIAAATHVFSTPVVRELPPVQRPGMFDST
Ga0150984_1006214982	3300012469	Avena Fatua Rhizosphere	TVVAPRPPIAAATHTFSTPVVRELPPVQRPGMFDSTW*
Ga0150984_1103916181	3300012469	Avena Fatua Rhizosphere	RHQPRPPIAAAHAYSTPIVREIPPVQRPGMFDATW*
Ga0075322_11705362	3300014311	Natural And Restored Wetlands	VTVTVTPRPPVASTAHAFSLPVAREIPPVVRPGMFS
Ga0132255_1043117802	3300015374	Arabidopsis Rhizosphere	MTLVVTPRPPIAAAPAFTTPVVRELPPVNRPGMFDATW*
Ga0190266_110153082	3300017965	Soil	KTMTIMVTPRPPIAAAAHVFTTPVVRELPPVQRPGMFDSTW
Ga0184619_102127862	3300018061	Groundwater Sediment	VPVTVTPRRPSANASHAFGLPTVRELPSVARPGTFD
Ga0190265_100433344	3300018422	Soil	VPVTVTPRRPAATAPHVYMLATVRELPPVARPGTFDSTW
Ga0190265_100773324	3300018422	Soil	MTVVVTPRQPIAAASHVYTTPVVRELPPVQRPGTFSATW
Ga0190265_100979903	3300018422	Soil	MSMTVTVTPRPPVRSAAHAFTLPTVRELPPVARPGTFDSTW
Ga0190265_101130613	3300018422	Soil	MTVTITPRPPASGAPHVYSTATVRELPPVARPGTFAATW
Ga0190265_101299884	3300018422	Soil	VTVTVTPRPPVATTAHAFSLPTVREIPPVYRPGTFASTW
Ga0190265_102036332	3300018422	Soil	MTVTITPRPPAAGTTHMFSAPTVRELPPVARPGTFAATW
Ga0190265_103300703	3300018422	Soil	MSPIVTSRPPMTAQHAYTTPVVRELPPVYRPGTFDSTW
Ga0190265_104139703	3300018422	Soil	MTQMVTPRPPVQTSQHVFTLPTVREMPPVARPGTFDSTW
Ga0190265_109231191	3300018422	Soil	VPVTVTPRRPAANAPHAFMLATVRELPPVTRPGTFDATW
Ga0190265_110539761	3300018422	Soil	MTVVATPRPPAAASHTYTLPVVRELPPVARPGMFDATW
Ga0190265_111479962	3300018422	Soil	VPVTVTPRRPAANAPHAFMLATVRELPPVARPGTFDATW
Ga0190265_115742572	3300018422	Soil	VVTVTITPRVPVATAHVYTLPTVREIPPVQRPGTFDSTW
Ga0190265_116599272	3300018422	Soil	MTVTTTPRPPVDAAGHAFTFPTVRELPPVSRPGTFDSTW
Ga0190265_116640982	3300018422	Soil	MTVTVTPRPPIAAAAHVYTTPVVRELPPVQRPGTFASTW
Ga0190265_118399262	3300018422	Soil	MSVTLTPRLPAPIVHAFSLPTVREIPPVTRPGTFDSTW
Ga0190265_125415521	3300018422	Soil	AKDFVVTVTVTPRVPVATAHVYTIPTVREILPVQRPGTFDSTW
Ga0190265_126803742	3300018422	Soil	MTVVTPRPPAASAPHAYSTPVVREMPPVQRPGTFAATW
Ga0190265_136583421	3300018422	Soil	VTVTITPRMPVATAHAYTLPTVREIPPVQRPGTFDS
Ga0190265_137223792	3300018422	Soil	FAVTVTVTPRMPVATAHAYSLPTVREIPPVQRPGTFASTW
Ga0190272_105108862	3300018429	Soil	MTVTVTPRTPISAASHVFTTPVVREMPPVQRPGTYASTW
Ga0190272_113670751	3300018429	Soil	MTVTVTPRPPVVTAHTFTLPTVRELPPVARPGTFDPTW
Ga0190272_116055281	3300018429	Soil	MTVVITPRQPSAAASHVYTTPVVREMPPVYRPGTFDSTW
Ga0190272_119358761	3300018429	Soil	ATVPVTVTPRRPSANAPHAFMLPTVRELPPVARPGTFDATW
Ga0190275_101336342	3300018432	Soil	MTLVAPPRPRTIQHVYSLPVVREVPPVARPGTFAAGW
Ga0190275_106681581	3300018432	Soil	MTVTITPRPPAATAPHVYSTPTVRELPPVARPGTFASTW
Ga0190269_114028471	3300018465	Soil	TVPVTITPRRPAANASHAFGLPTVRELPPVARPGTFDATW
Ga0190268_100315172	3300018466	Soil	MTVTVTPRPPVTAAAHTFTFPTVRELPPVSRPGTFDSTW
Ga0190268_102283492	3300018466	Soil	MSPIVTPRPPVSAQHAYSTPVVRELPPVYRPGTFDSTW
Ga0190270_116590692	3300018469	Soil	MTVVITPRQPSAAASHVYTTPVVREMPPVNRPGTFDSTW
Ga0190270_134415972	3300018469	Soil	MTITVTPRPPIAAAAHVYTTPVVRELPPVQRPGTFASTW
Ga0190274_122251082	3300018476	Soil	MTVVAPRPPIAAATHVFSTPVVRELPPVQRPGMFDSTW
Ga0190271_100780232	3300018481	Soil	MTVTITPRPPVAAAGHAFTLPVVRELPPVARPGTFDSTW
Ga0190271_102743151	3300018481	Soil	VTVTVTPRNPAATARHGFTLPTVRELPPVSRPGTFSSTW
Ga0184643_14300851	3300019255	Groundwater Sediment	MTVLVTPRQPTAAASHVYTTPVVREMPPVYRPGMFDSTW
Ga0184642_14253442	3300019279	Groundwater Sediment	MTVVVTPRQPTAAASHVYTTPVVREMPPVYRPGMFDSTW
Ga0190264_105386062	3300019377	Soil	MTVTVTPRPPVTAANHTFTFPTVRELPPVSRPGTFDSTW
Ga0190264_120373752	3300019377	Soil	MPVTITPRPPASTAPHVYSTPTVRELPPVARPGTFAATW
Ga0190264_122207982	3300019377	Soil	KDFAVTVTVTPRMPVATAHAYSLPTVREIPPVQRPGTFASTW
Ga0222622_102634093	3300022756	Groundwater Sediment	MTIVVTPRPPISAAAHVFSTPVVRELPPVQRPGMFDTTW
Ga0222622_103592961	3300022756	Groundwater Sediment	VTVTVTPRRPAAAAHAFSLPTVREIPPVQRPGTFDSIW
Ga0196962_100152193	3300024430	Soil	MTVTVTPRPPVATAGHAFTLPVVRELPPVARPGMFDSTW
Ga0196962_100461982	3300024430	Soil	MTVTVTPRPPVATAGHAFTLPVVRELPPVARPGTFDSTW
Ga0196962_100594072	3300024430	Soil	MSPIVTPRPPASAAQHAFTTPVVRELPPVYRPGMFDSTW
Ga0196962_102335312	3300024430	Soil	VTVTPRPPVRTAAHTFTLPTVRELPPVARPGTFDSTW
Ga0207709_101626912	3300025935	Miscanthus Rhizosphere	MTIVVTPRLSVAAAHVYSTPIVREIPPVQRPGMFDATW
Ga0207669_110168181	3300025937	Miscanthus Rhizosphere	TAHPHPTMSPLPTPRPPAHRHVYVAAVVRELPPVSRPGQFASTW
Ga0214469_10567933	3300027636	Soil	MTVTVTPRPPVRSAAHAFTLPTVRELPPVARPGTFDSTW
Ga0207428_100704502	3300027907	Populus Rhizosphere	MTVVAPRPPIAAATHAFSTPVVRELPPVQRPGMFDSTW
Ga0207428_101557412	3300027907	Populus Rhizosphere	MTVVVTPRPPIAAAHAFTTPVVREMPPVHRPGTFDSTW
Ga0207428_112312191	3300027907	Populus Rhizosphere	MSPIVTPRPPVATHAYTLPVVRELPPVSRPGTFDSTW
Ga0209382_118619601	3300027909	Populus Rhizosphere	MTIVVTPRPPIAAAAHAFSMPVVRELPPVQRPGLFDSTW
Ga0307276_101531941	3300028705	Soil	MTIVVTPRPPIAAAAHAYSTPVVRELPPVQRPGMFDATW
Ga0307301_100924362	3300028719	Soil	MTVVVPRPPIAAAAHAFSTPVVRELPPVQRPGMFDATW
Ga0307318_100501072	3300028744	Soil	MSPTVTPRRPTSAASHAFTTPVVRELPPVRRPGMFDATW
Ga0307282_104273642	3300028784	Soil	MTIVVTPRPPAAAHAYSTPVVRELPPVQRPGMFDATW
Ga0307287_103305591	3300028796	Soil	MTVTVTPRPPVAAAHAFSLPVVREIPPVQRPSTFAA
Ga0307302_103627412	3300028814	Soil	VTVTITPRRPAASAHAFALPVVREIPPVQRPGTFDATW
Ga0307302_105716012	3300028814	Soil	MTVVVTPRQPTAAASHVYTTPVVREMPPVYRPGTFDSTW
Ga0307286_102900033	3300028876	Soil	CDRRSLARHPAAAARADSFPAVREIPPVLRPGRFDSTW
Ga0299907_102607542	3300030006	Soil	MTVTITPRPPAAGATHMFSAPTVRELPPVARPGTFAATW
Ga0268386_100738635	3300030619	Soil	VTVTVTPRQPAASAPHFFSTPTVRELPPVRRPGTFASTW
Ga0102757_111061541	3300030785	Soil	MTIVVTPRPPIASAHAFTTPVVRELPPVQRPGVFDSTW
Ga0307501_102811931	3300031152	Soil	MTIVVTPRQPIAAAHAYSTPVVRELPPVYRPGMFDTTW
Ga0299914_104250132	3300031228	Soil	MTVTVTPRPPVRTAAHAFTLPTVRELPPVARPGTFDSTW
Ga0307406_100619762	3300031901	Rhizosphere	VTVTVTPRRPAASSPRFFTLPTVRELPPVLRSGTYASTW
Ga0307406_102445633	3300031901	Rhizosphere	GRWESSLIVTVTPRPPIAITAHAFDLPTVREIPPVQRPGTFSSTW
Ga0307406_106855852	3300031901	Rhizosphere	MTVMAPRPPIAAAAHAFSIPVVRELPPVQRPGIFDSTW
Ga0307406_113451992	3300031901	Rhizosphere	TATVTPRPPVATAAHAFQLPTVREIPPVPRPGTFSSTW
Ga0307416_1001673362	3300032002	Rhizosphere	VTVTVTPRPPVATASHAYTLPTVRELPPVSRPGTFASIW
Ga0307415_1006737572	3300032126	Rhizosphere	MTVLAPRPPIAAAAHSFSTPVVRELPPVQRPGMFDSTW

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F048549

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences