Metagenome / Metatranscriptome Family F048523

Basic Information
Family ID	F048523
Family Type	Metagenome / Metatranscriptome
Number of Sequences	148
Average Sequence Length	41 residues
Representative Sequence	AVAAMRAALADDLDVPAALRIAEEEGGQAARSLGTLLGLW
Number of Associated Samples	130
Number of Associated Scaffolds	148

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.37 %
% of genes near scaffold ends (potentially truncated)	94.59 %
% of genes from short scaffolds (< 2000 bps)	91.89 %
Associated GOLD sequencing projects	125
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Most Common Taxonomy
Group	Bacteria (72.973 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.568 % of family members)
Environment Ontology (ENVO)	Unclassified (18.919 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.649 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.53% β-sheet: 0.00% Coil/Unstructured: 51.47%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 148 Family Scaffolds
PF01895	PhoU	14.86
PF02583	Trns_repr_metal	6.08
PF01844	HNH	4.05
PF12706	Lactamase_B_2	3.38
PF03551	PadR	2.70
PF13649	Methyltransf_25	2.70
PF00425	Chorismate_bind	2.03
PF13421	Band_7_1	2.03
PF00581	Rhodanese	2.03
PF00392	GntR	2.03
PF01545	Cation_efflux	2.03
PF01925	TauE	1.35
PF02613	Nitrate_red_del	1.35
PF00903	Glyoxalase	1.35
PF07992	Pyr_redox_2	1.35
PF02720	DUF222	1.35
PF13302	Acetyltransf_3	1.35
PF08044	DUF1707	1.35
PF03466	LysR_substrate	1.35
PF02585	PIG-L	0.68
PF04149	DUF397	0.68
PF00582	Usp	0.68
PF00501	AMP-binding	0.68
PF02771	Acyl-CoA_dh_N	0.68
PF01435	Peptidase_M48	0.68
PF04978	DUF664	0.68
PF00005	ABC_tran	0.68
PF00654	Voltage_CLC	0.68
PF12849	PBP_like_2	0.68
PF06013	WXG100	0.68
PF01022	HTH_5	0.68
PF00210	Ferritin	0.68
PF12681	Glyoxalase_2	0.68
PF05872	HerA_C	0.68
PF00753	Lactamase_B	0.68
PF03803	Scramblase	0.68
PF07282	OrfB_Zn_ribbon	0.68
PF10009	DUF2252	0.68
PF13193	AMP-binding_C	0.68
PF02774	Semialdhyde_dhC	0.68

COG ID	Name	Functional Category	% Frequency in 148 Family Scaffolds
COG1937	DNA-binding transcriptional regulator, FrmR family	Transcription [K]	6.08
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	2.70
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	2.70
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	2.70
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	2.03
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	2.03
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	2.03
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	1.35
COG2180	Nitrate reductase assembly protein NarJ, required for insertion of molybdenum cofactor	Posttranslational modification, protein turnover, chaperones [O]	1.35
COG0002	N-acetyl-gamma-glutamylphosphate reductase	Amino acid transport and metabolism [E]	0.68
COG0038	H+/Cl- antiporter ClcA	Inorganic ion transport and metabolism [P]	0.68
COG0136	Aspartate-semialdehyde dehydrogenase	Amino acid transport and metabolism [E]	0.68
COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	Replication, recombination and repair [L]	0.68
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.68
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	0.68
COG4842	Secreted virulence factor YukE/EsxA, WXG100 family	Defense mechanisms [V]	0.68

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.65 %
Unclassified	root	N/A	26.35 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.65 %
Unclassified	root	N/A	26.35 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.97 %
Unclassified	root	N/A	26.35 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.68 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	66.89 %
Unclassified	root	N/A	26.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.68 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.68 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	65.54 %
Unclassified	root	N/A	26.35 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.68 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.68 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	45.95 %
Unclassified	root	N/A	26.35 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	2.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.68 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.35 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	19.59 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	4.05 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	2.70 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.35 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.35 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.68 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.68 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.35 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	18.92 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	2.70 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	2.03 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2.03 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.35 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.35 %
Catenulisporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae	0.68 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.68 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	0.68 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.35 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	18.92 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	2.03 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.35 %
unclassified Acidimicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae	0.68 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.68 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.68 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.68 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.68 %
Catenulispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora	0.68 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.68 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.35 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	18.92 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	2.03 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.35 %
Acidimicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	0.68 %
Catenulispora acidiphila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	0.68 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.68 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.68 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.68 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.68 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.68 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.68 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004594\|Ga0068976_1233444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	546	Open in IMG/M
3300004606\|Ga0068962_1068159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	677	Open in IMG/M
3300004615\|Ga0068926_1015894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	822	Open in IMG/M
3300005171\|Ga0066677_10194703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1132	Open in IMG/M
3300005329\|Ga0070683_101766056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	595	Open in IMG/M
3300005444\|Ga0070694_101100691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	663	Open in IMG/M
3300005445\|Ga0070708_100309132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1489	Open in IMG/M
3300005468\|Ga0070707_101472758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	647	Open in IMG/M
3300005524\|Ga0070737_10155648	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300005575\|Ga0066702_10542121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	704	Open in IMG/M
3300005764\|Ga0066903_104955674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	707	Open in IMG/M
3300006028\|Ga0070717_10398295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1236	Open in IMG/M
3300006052\|Ga0075029_100538153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	775	Open in IMG/M
3300006173\|Ga0070716_100062949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2152	Open in IMG/M
3300006173\|Ga0070716_101533463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	545	Open in IMG/M
3300006606\|Ga0074062_13013060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	559	Open in IMG/M
3300006806\|Ga0079220_10714557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	739	Open in IMG/M
3300006854\|Ga0075425_100798481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1082	Open in IMG/M
3300006871\|Ga0075434_100488142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1253	Open in IMG/M
3300006903\|Ga0075426_10448313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	955	Open in IMG/M
3300009101\|Ga0105247_11504987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	549	Open in IMG/M
3300009137\|Ga0066709_104595694	Not Available	505	Open in IMG/M
3300009521\|Ga0116222_1450683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	561	Open in IMG/M
3300009700\|Ga0116217_10483177	Not Available	779	Open in IMG/M
3300009839\|Ga0116223_10664216	Not Available	599	Open in IMG/M
3300010048\|Ga0126373_10098611	All Organisms → cellular organisms → Bacteria	2698	Open in IMG/M
3300010154\|Ga0127503_11316010	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300010339\|Ga0074046_10516509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	712	Open in IMG/M
3300010343\|Ga0074044_10668685	Not Available	678	Open in IMG/M
3300010343\|Ga0074044_10883746	Not Available	584	Open in IMG/M
3300010343\|Ga0074044_10951428	Not Available	562	Open in IMG/M
3300010358\|Ga0126370_11850492	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300010361\|Ga0126378_10902659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	990	Open in IMG/M
3300010373\|Ga0134128_11127782	Not Available	866	Open in IMG/M
3300010376\|Ga0126381_101475432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	983	Open in IMG/M
3300010379\|Ga0136449_102588252	Not Available	724	Open in IMG/M
3300010379\|Ga0136449_104629711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	504	Open in IMG/M
3300010876\|Ga0126361_10708568	Not Available	660	Open in IMG/M
3300011065\|Ga0138533_1139534	Not Available	844	Open in IMG/M
3300011085\|Ga0138581_1007604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	542	Open in IMG/M
3300011270\|Ga0137391_10356435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1256	Open in IMG/M
3300012198\|Ga0137364_10132160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1790	Open in IMG/M
3300012202\|Ga0137363_10192230	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1632	Open in IMG/M
3300012205\|Ga0137362_10476364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1080	Open in IMG/M
3300012210\|Ga0137378_11031453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	737	Open in IMG/M
3300012349\|Ga0137387_10365716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1045	Open in IMG/M
3300012354\|Ga0137366_10512063	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300012357\|Ga0137384_10660594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	850	Open in IMG/M
3300012481\|Ga0157320_1006150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	822	Open in IMG/M
3300012507\|Ga0157342_1028991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	687	Open in IMG/M
3300012960\|Ga0164301_10299670	Not Available	1081	Open in IMG/M
3300013100\|Ga0157373_10814158	All Organisms → cellular organisms → Bacteria → Terrabacteria group	689	Open in IMG/M
3300013105\|Ga0157369_11213023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	770	Open in IMG/M
3300014164\|Ga0181532_10104912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1755	Open in IMG/M
3300015372\|Ga0132256_101152105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	889	Open in IMG/M
3300016294\|Ga0182041_10694410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	902	Open in IMG/M
3300016371\|Ga0182034_10561736	Not Available	959	Open in IMG/M
3300016371\|Ga0182034_11828017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	536	Open in IMG/M
3300017928\|Ga0187806_1209468	Not Available	663	Open in IMG/M
3300017938\|Ga0187854_10079336	Not Available	1572	Open in IMG/M
3300017955\|Ga0187817_10384022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	896	Open in IMG/M
3300017959\|Ga0187779_11148127	Not Available	544	Open in IMG/M
3300017966\|Ga0187776_10444262	All Organisms → cellular organisms → Bacteria → Terrabacteria group	876	Open in IMG/M
3300017970\|Ga0187783_10385750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1018	Open in IMG/M
3300017970\|Ga0187783_10464126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	919	Open in IMG/M
3300017973\|Ga0187780_11434715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	509	Open in IMG/M
3300017974\|Ga0187777_11225000	Not Available	549	Open in IMG/M
3300017999\|Ga0187767_10227390	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300018007\|Ga0187805_10097383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1329	Open in IMG/M
3300018007\|Ga0187805_10186583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	946	Open in IMG/M
3300018033\|Ga0187867_10800910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	511	Open in IMG/M
3300018034\|Ga0187863_10175994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1192	Open in IMG/M
3300018037\|Ga0187883_10023096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3423	Open in IMG/M
3300018042\|Ga0187871_10236758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1015	Open in IMG/M
3300018057\|Ga0187858_10096358	Not Available	2025	Open in IMG/M
3300018431\|Ga0066655_10271159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1094	Open in IMG/M
3300018433\|Ga0066667_10778998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	810	Open in IMG/M
3300020199\|Ga0179592_10163557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1016	Open in IMG/M
3300020582\|Ga0210395_10982077	Not Available	626	Open in IMG/M
3300020582\|Ga0210395_11225928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	551	Open in IMG/M
3300021171\|Ga0210405_10761102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	744	Open in IMG/M
3300021402\|Ga0210385_10639598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	812	Open in IMG/M
3300021407\|Ga0210383_10440189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1125	Open in IMG/M
3300021474\|Ga0210390_10157612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1913	Open in IMG/M
3300021479\|Ga0210410_10314687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	1404	Open in IMG/M
3300021559\|Ga0210409_10765451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	838	Open in IMG/M
3300021559\|Ga0210409_11373543	Not Available	582	Open in IMG/M
3300021560\|Ga0126371_10131143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2546	Open in IMG/M
3300021560\|Ga0126371_10479876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1391	Open in IMG/M
3300024286\|Ga0247687_1061539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	570	Open in IMG/M
3300025898\|Ga0207692_11012022	Not Available	549	Open in IMG/M
3300025914\|Ga0207671_11485134	Not Available	524	Open in IMG/M
3300025915\|Ga0207693_10170902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1712	Open in IMG/M
3300025928\|Ga0207700_10365912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	1258	Open in IMG/M
3300025929\|Ga0207664_10428199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	1179	Open in IMG/M
3300025929\|Ga0207664_10513786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1073	Open in IMG/M
3300026142\|Ga0207698_10782370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	955	Open in IMG/M
3300026551\|Ga0209648_10775794	Not Available	523	Open in IMG/M
3300026557\|Ga0179587_10616568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	714	Open in IMG/M
3300026908\|Ga0207787_1027207	Not Available	562	Open in IMG/M
3300026984\|Ga0208732_1029686	Not Available	511	Open in IMG/M
3300027703\|Ga0207862_1014375	Not Available	2337	Open in IMG/M
3300027738\|Ga0208989_10134859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	833	Open in IMG/M
3300027765\|Ga0209073_10271405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	665	Open in IMG/M
3300027905\|Ga0209415_10450027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1014	Open in IMG/M
3300028783\|Ga0302279_10374524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	603	Open in IMG/M
3300030046\|Ga0302305_1070713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1470	Open in IMG/M
3300030399\|Ga0311353_11453907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	557	Open in IMG/M
3300031040\|Ga0265754_1039627	Not Available	515	Open in IMG/M
3300031090\|Ga0265760_10244878	Not Available	619	Open in IMG/M
3300031199\|Ga0307495_10139349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	617	Open in IMG/M
3300031236\|Ga0302324_101391287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	919	Open in IMG/M
3300031543\|Ga0318516_10139912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1387	Open in IMG/M
3300031719\|Ga0306917_11290035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	565	Open in IMG/M
3300031719\|Ga0306917_11451713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	528	Open in IMG/M
3300031724\|Ga0318500_10053253	Not Available	1726	Open in IMG/M
3300031764\|Ga0318535_10550171	Not Available	512	Open in IMG/M
3300031770\|Ga0318521_10315199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	922	Open in IMG/M
3300031771\|Ga0318546_10266099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1182	Open in IMG/M
3300031797\|Ga0318550_10231104	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300031799\|Ga0318565_10570976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	544	Open in IMG/M
3300031805\|Ga0318497_10087771	Not Available	1656	Open in IMG/M
3300031805\|Ga0318497_10353912	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300031820\|Ga0307473_11053121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	597	Open in IMG/M
3300031845\|Ga0318511_10240961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	810	Open in IMG/M
3300031845\|Ga0318511_10600947	Not Available	513	Open in IMG/M
3300031890\|Ga0306925_10650352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	1108	Open in IMG/M
3300031910\|Ga0306923_11022762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	896	Open in IMG/M
3300031912\|Ga0306921_10060068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4337	Open in IMG/M
3300031954\|Ga0306926_12761315	Not Available	532	Open in IMG/M
3300032008\|Ga0318562_10341002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	871	Open in IMG/M
3300032065\|Ga0318513_10278889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	811	Open in IMG/M
3300032089\|Ga0318525_10496998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	624	Open in IMG/M
3300032090\|Ga0318518_10450538	Not Available	659	Open in IMG/M
3300032090\|Ga0318518_10719205	Not Available	508	Open in IMG/M
3300032160\|Ga0311301_12201577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	633	Open in IMG/M
3300032261\|Ga0306920_102618215	Not Available	691	Open in IMG/M
3300032770\|Ga0335085_10752019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1078	Open in IMG/M
3300032783\|Ga0335079_11955307	Not Available	566	Open in IMG/M
3300032805\|Ga0335078_10655722	Not Available	1311	Open in IMG/M
3300032829\|Ga0335070_12011787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	520	Open in IMG/M
3300032892\|Ga0335081_10075850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5113	Open in IMG/M
3300032892\|Ga0335081_10283842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2206	Open in IMG/M
3300032954\|Ga0335083_11066558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	633	Open in IMG/M
3300032955\|Ga0335076_10007912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10716	Open in IMG/M
3300033134\|Ga0335073_10529986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1336	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.57%
Host-Associated	Host-Associated	7.43%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.78%
Aquatic	Environmental → Aquatic	8.78%
Plants	Host-Associated → Plants	7.43%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.08%
Freshwater	Environmental → Aquatic → Freshwater	8.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.41%
Peat	Environmental → Terrestrial → Peat	2.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.03%
Sediment	Environmental → Aquatic → Sediment	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.19%
Loam	Environmental → Terrestrial → Soil → Loam	12.16%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.73%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.70%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.03%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.68%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.00%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	14.19%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.11%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.38%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.38%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.70%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.03%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.35%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.68%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.57%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	8.78%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.76%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.08%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.08%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.41%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.05%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.05%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.70%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.70%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.03%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.03%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.03%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.35%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.35%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.35%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.35%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.68%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.68%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.68%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.68%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.68%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.68%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.68%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.68%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004594	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 73 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004606	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 54 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004615	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 11 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005524	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011065	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 11 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011085	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 71 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012481	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.1.yng.040610	Host-Associated	Open in IMG/M
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024286	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK28	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026908	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 77 (SPAdes)	Environmental	Open in IMG/M
3300026984	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF048 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028783	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_3	Environmental	Open in IMG/M
3300030046	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_3	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300031040	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F048523

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0068976_12334442	3300004594	Peatlands Soil	ALAAMRAALANDLDVPAALNIAEDGGGQAARSLGSLLGLW*
Ga0068962_10681592	3300004606	Peatlands Soil	ASPALAAMRAALANDLDVPAALNIAEDGGGQAARSLGSLLGLW*
Ga0068926_10158942	3300004615	Peatlands Soil	ICFFFFSFYLAAMRAALANDLDVPAALNIAEDGGGQAARSLGSLLGLW*
Ga0066677_101947031	3300005171	Soil	PERKAAGDGGPAVAAMRAALAHDLDVPTALRIAEEDGGQAARSLGTLLGLW*
Ga0070683_1017660561	3300005329	Corn Rhizosphere	AAVAATRAALASDLDVPAALRIAESEGGQAARSLGALLGLW*
Ga0070694_1011006911	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	GGPAVAAMRAALARDLDVPTALRIAEEEGGQAARSLGTLLGLW*
Ga0070708_1003091322	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VDAVRAALADNLDVPTAIAIAQESGGQAARVLGTLLGLW*
Ga0070707_1014727581	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	GGPAVAAMRAALAHDLDVPTALRIAEEEGGQAARSLGTLLGLW*
Ga0070737_101556483	3300005524	Surface Soil	TAAVTAIRSVLAADLDVPAALGIAEEAGGEAARSLGSLLGLW*
Ga0066702_105421211	3300005575	Soil	MRAALAHDLDVPTALRIAEEDGGQAARSLGTLLGLW*
Ga0066903_1049556741	3300005764	Tropical Forest Soil	AALDDDLDVPAALRIAEDDGGPAARALGSLLGLW*
Ga0070717_103982951	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	AVAAMRAALARDLDVPTALRIAEEEGGQAARSLGTLLGLW*
Ga0075029_1005381532	3300006052	Watersheds	VAGRAGPAVAAMRAALANDLDVPTALNIAEDGGGQAARSLGSLLGLW*
Ga0070716_1000629495	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	TRAALASDLDVPAALRVAEEEGGQAARSLGALLGLW*
Ga0070716_1015334632	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	AVAAMRAALAHDLDVPAALHIAEEEGGQAARSLGTLLGLW*
Ga0074062_130130601	3300006606	Soil	RDVAGGGAPAVAAMRAALARDLDVPTALRIAEEEGGQAARSLGTLLGLW*
Ga0079220_107145572	3300006806	Agricultural Soil	AAGSDGGAGVTAMRAALAHDLDVPTALRIAEEEGGQAARSLGTLLGLW*
Ga0075425_1007984811	3300006854	Populus Rhizosphere	ATRQALASDLDVPAALRIAESEGAQAARSLGALLGLW*
Ga0075434_1004881421	3300006871	Populus Rhizosphere	GTAAVAATRAALASDLDVPAALRVAEEEGGQAARSLGALLGLW*
Ga0075426_104483131	3300006903	Populus Rhizosphere	RAERHVAGDGGPAVAAMRAALARDLDVPTALQIAEEEGGQAARSLGTLLGLW*
Ga0105247_115049871	3300009101	Switchgrass Rhizosphere	GPAVAAMRAALARDLDVPTALRIAEEEGGRAARSLGTLLGLW*
Ga0066709_1045956941	3300009137	Grasslands Soil	DAAGDGGPAVAAMRAALAHDLDVPAALRIAEDEGGQAARSLGTLLGLW*
Ga0116222_14506832	3300009521	Peatlands Soil	AALANDLDVPAAMNIAEDPGGQAARSLGSLLGLW*
Ga0116217_104831772	3300009700	Peatlands Soil	HDDTAVAAVRAALAHDLDVPAALRIAEDEGGPAARSLGSLLGLW*
Ga0116217_109102062	3300009700	Peatlands Soil	AGRPGRSVAGTGDTAVAAVRAALASDLDVPAALGIAEDEGGPAARTVGSLLALW*
Ga0116223_106642161	3300009839	Peatlands Soil	AVRAALAHDLDVPAALRIAEDEGGPAARSLGSLLGLW*
Ga0126373_100986117	3300010048	Tropical Forest Soil	GRAVAGHGDGAAAAVRAALDSDLDVPAALRVAEDSGGQAARVLGSQLGLW*
Ga0127503_113160101	3300010154	Soil	MRAALANDLDVPAALDIAEDDGGQAARSLGSLLGLW*
Ga0074046_105165092	3300010339	Bog Forest Soil	VAAVRAALATDLDVPAALRIAEDDGGQAARVLGSLLGLW*
Ga0074044_106686852	3300010343	Bog Forest Soil	AALANDLDVPAALNVAEEDGGQAARSLGSLLGLW*
Ga0074044_108837462	3300010343	Bog Forest Soil	AMRAALANDLDVPAALNIAEEDGGQAARSLGSLLGLW*
Ga0074044_109514281	3300010343	Bog Forest Soil	AMRAALANDLDVPAALNIAEDVGGQAARSLGSLLGLW*
Ga0126370_118504922	3300010358	Tropical Forest Soil	AAAVEAVRAALADNLDVPLAIAIAEESGGQAARVLGTLIGLW*
Ga0126378_109026593	3300010361	Tropical Forest Soil	GAIRETLASDLDVPTAIGIAEDEGGQAARMVCSILGLW*
Ga0134128_111277822	3300010373	Terrestrial Soil	AGDGGPAGAAMRAALARDLDVPTALRIAQEEGGQAARSLGTLLGLW*
Ga0126381_1014754322	3300010376	Tropical Forest Soil	AAMRAALADDLDVPTALRIAEEEGGQAARSLGTLLGLW*
Ga0136449_1025882521	3300010379	Peatlands Soil	AAMRAALANDLDVPAALNIAEDGGGQAARSLGSLLGLW*
Ga0136449_1046297112	3300010379	Peatlands Soil	GPAVAAMRAALANDLDVPTALNIAEEGGGQATRSLGSLLGLW*
Ga0126361_107085682	3300010876	Boreal Forest Soil	AVRAALADDLDVPGALGIAEEAGGSAARSAGSLLGLW*
Ga0138533_11395341	3300011065	Peatlands Soil	LICFFFFSFYLAAMRAALANDLDVPAALNIAEDGGGQAARSLGSLLGLW*
Ga0138581_10076042	3300011085	Peatlands Soil	AWPEVPAPALAAMRAALANDLDVPAALNIAEDGGGQAARSLGSLLGLW*
Ga0137391_103564352	3300011270	Vadose Zone Soil	AVAAVHAALASDLDVPAALDIAEDQGGQAARVLGSVLGLW*
Ga0137364_101321603	3300012198	Vadose Zone Soil	ERKAVGDGGPAVAAMRAALAHDLDVPTALRIAEEDGGQAARSLGTLLGLW*
Ga0137363_101922302	3300012202	Vadose Zone Soil	RATLAHDLNVPAAFAVAEEAGGQAARVLGSLLGLW*
Ga0137362_104763642	3300012205	Vadose Zone Soil	AALARDLDVPAALHIAEEEGGQAARSLGTLLGLW*
Ga0137378_110314532	3300012210	Vadose Zone Soil	RPERNAAGDGGPAVAAMRAALAHDLDVPAALQIAEDESGQAARSLGTLLGLW*
Ga0137387_103657161	3300012349	Vadose Zone Soil	GSSGSGGAAVAGTRTALARDLDVPAALRIAESEGGQAARSLGALLGLW*
Ga0137366_105120631	3300012354	Vadose Zone Soil	GSAALEAVHEALARDLDVPAALRIAEDSGGQAARVLGSLLGLW*
Ga0137384_106605941	3300012357	Vadose Zone Soil	DDLDVPAALAIAEEAGGAVARGLIATLGLSEPPR*
Ga0157320_10061502	3300012481	Arabidopsis Rhizosphere	GHGATAVAAMRAALARDLDVPAALRIAEEEGGQAARSLGTLLGLW*
Ga0157342_10289913	3300012507	Arabidopsis Rhizosphere	RAALARDLDVPAALQIAEEEGGQAARSLGTLLGLW*
Ga0164301_102996702	3300012960	Soil	VAAMRAALARDLDVPTALRIAEEEGGQAARSLGTLLGLW*
Ga0157373_108141581	3300013100	Corn Rhizosphere	MRAALARDLDVPTALRIAEEEGGQAARSLGTLLGLW*
Ga0157369_112130231	3300013105	Corn Rhizosphere	GAAGRAERDVAGDGCPAVAAMRAALARDLDVPTALRIAEEEGGQAARSLGTLLGLW*
Ga0181532_101049122	3300014164	Bog	VAAVRAALASDLDVPAALRIAEDNGGQAARVLGSLLGLW*
Ga0132256_1011521052	3300015372	Arabidopsis Rhizosphere	GAAGRAGRDVAGDGGPAVAAMRAALARDLDVPTALRIAEEEGGQAARSLGTLLGLW*
Ga0182041_106944101	3300016294	Soil	GAVRAALADDLDVPAALRIAEDDGGPAARSLAALLGLW
Ga0182034_105617362	3300016371	Soil	AVTAMRAALADDLDVPAALRVAENDGGQAARSLGSLLGLW
Ga0182034_118280172	3300016371	Soil	RAALADDLDVPAALRIAEEEGGQAARSLGALLGLW
Ga0187806_12094681	3300017928	Freshwater Sediment	IRAALRADLDVPAALAVAEDAGGQPARALSALLGLW
Ga0187854_100793362	3300017938	Peatland	VAAVRAALASDLDVPAALRIAEDNGGQAARVLGSLLGLW
Ga0187817_103840222	3300017955	Freshwater Sediment	MRAALADDLDVPAALRIAEDEGGQAARILGSLLGLW
Ga0187779_101552484	3300017959	Tropical Peatland	AAGRPGRGPAGHDEAAVTAVRAALADDLDVPAALRIAESEGGPAARSLGSLLGLW
Ga0187779_111481272	3300017959	Tropical Peatland	VRAALADDLDVPAALRIAEDDGGPAARGLGSLLGLW
Ga0187776_104442623	3300017966	Tropical Peatland	RAALADDLDVPAALRVAENDGGQAARSLGSLLGLW
Ga0187783_103857503	3300017970	Tropical Peatland	VAGSGGAAVTAMHAALADDLDVPAALRIAEDDGGQAARHLGSLLGLW
Ga0187783_104641262	3300017970	Tropical Peatland	RAALARDLDVPAALRIAEEEGGPAARALGSLLGLW
Ga0187780_114347152	3300017973	Tropical Peatland	VTAMRAALADDLDVPAALRIAEDDGGQAARTLGSLLGLW
Ga0187777_112250003	3300017974	Tropical Peatland	VGGNGGPAVAAMRAALASDLDVPAALRIAEDEGGQAARSLGSLLGLW
Ga0187767_102273902	3300017999	Tropical Peatland	AGAAAGAVRAALEADLDVPAALRIAEDDGGPAARGLGSLLGLW
Ga0187805_100973831	3300018007	Freshwater Sediment	ATAVRAALTNGLDVPAALGIAEQEGGQAARSLGSLLGLW
Ga0187805_101865831	3300018007	Freshwater Sediment	RTALAEDLDVPAALRIAEQEGGQAARVLGSLLGLW
Ga0187867_108009101	3300018033	Peatland	AEPTAIRMSLASDLDVPTALAIAEDSGGQAARVPGALLGL
Ga0187863_101759943	3300018034	Peatland	SGAAVAAVRAALASDLDVPAALRIAEDNGGQAARVLGSLLGLW
Ga0187883_100230965	3300018037	Peatland	GLAEPTAIRMSLASDLDVPTALAIAEDSGGQAARVPGALLGL
Ga0187871_102367583	3300018042	Peatland	AAMRAALASDLDVPAALNIAEDGGGQAARSLGSLLGLW
Ga0187858_100963582	3300018057	Peatland	VAAVRAALASDLDVPAALRIAEDNGGQAARVLGSLL
Ga0066655_102711592	3300018431	Grasslands Soil	GRPERDAAGDGGPAVAAMRAALARDLDVPAALQIAEEEGGQAARSLGTLLGLW
Ga0066667_107789982	3300018433	Grasslands Soil	AAMRAALAHDLDVPTALRIAEEDGGQAARSLGTLLGLW
Ga0179592_101635572	3300020199	Vadose Zone Soil	PAVAAMRAALAHDLDVPAALRIAEDEGGQAARSLGTLLGLW
Ga0210395_109820771	3300020582	Soil	GSGGTAVAAMRAALADDLDVPAALRIAEDGGGQAARSLGSLLGLW
Ga0210395_112259281	3300020582	Soil	GDGGPAVAAMRAALAHDLDVPTALRIAEEEGGQAARSLGTLLGLW
Ga0210405_107611022	3300021171	Soil	DGGPAVAAMRAALAHDLDVPTALRIAEEEGGQAARSLGTLLGLW
Ga0210385_106395983	3300021402	Soil	AAGSGGTAVAAMRAALAGDLDVPAALRIAEDGGGQAARSLGSLLGLW
Ga0210383_104401893	3300021407	Soil	AMRAALADDLDVPAALRIAEDGGGQAARSLGSLLGLW
Ga0210390_101576121	3300021474	Soil	RGVAGSAGQAVAAMRAALANDLDVPAALNIAEDGGGQAARSLGSLLGLW
Ga0210410_103146871	3300021479	Soil	VAAMRAALARDLDVPAALQIAEEEGGQAARSLGTLLGLW
Ga0210409_107654511	3300021559	Soil	RSAMARDLDVPTALEIAEDAGGPVASELAHFLGLR
Ga0210409_113735431	3300021559	Soil	AMRAALARDLDVPAALQIAEQEGGQAARSLGTLLGLW
Ga0126371_101311435	3300021560	Tropical Forest Soil	VRAALADDLDVPAALRIAEDDGGPAARGLAALLGLW
Ga0126371_104798761	3300021560	Tropical Forest Soil	AVAAMRAALARDLDVPAALRIAEEEGGQAARSLGPLLGLW
Ga0247687_10615391	3300024286	Soil	AVAAMRAALARDLDVPTALRIAEEEGGQAARSLGTLLGLW
Ga0207692_110120222	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	AVAATRRALASGLDVPAALGIAESEGAQAARSLGALLGLW
Ga0207671_114851341	3300025914	Corn Rhizosphere	AERDVAGDGGPAVAAMRAALARDLDVPTALRIAEEEGGQAARSLGTLLGLW
Ga0207693_101709021	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	AAGRAERDVAGDGGPAVAAMRAALARDLDVPTALRIAEEEGGQAARSLGTLLGLW
Ga0207700_103659123	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MRAALARDLDVPAALQIAEQEGGQAARSLGTLLGLW
Ga0207664_104281993	3300025929	Agricultural Soil	MRAALAHDLDVPAALHIAEEEGGQAARSLGTLLGLW
Ga0207664_105137861	3300025929	Agricultural Soil	AGDGGPAVAAMRAALARDLDVPTALRIAEEEGGQAARSLGTLLGLW
Ga0207698_107823701	3300026142	Corn Rhizosphere	AMRAALARDLDVPTALRIAEEEGGQAARSLGTLLGLW
Ga0209648_107757941	3300026551	Grasslands Soil	AAGNGGAAVAAVRAALASDLDVPAALRIAEDDGGQAPRVLGSLLGLW
Ga0179587_106165681	3300026557	Vadose Zone Soil	VAAMRAALAHDLDVPAALRIAEDEGGQAARSLGTLLGLW
Ga0207787_10272071	3300026908	Tropical Forest Soil	AMRAALADDLDVPAALRVAENDGGQAARRLGSLLGLW
Ga0208732_10296861	3300026984	Forest Soil	GDGGPAVAAMRAALARDLDVPAALQIAEEEGGQAARSLGTLLGLW
Ga0207862_10143751	3300027703	Tropical Forest Soil	AAAVTAMRAALADDLDVPAALRVAENDGGQAARRLGSLLGLW
Ga0208989_101348592	3300027738	Forest Soil	GDAAVAAVRAALARDLDVPAALRIAEDDGGPAARTLGSLLGLW
Ga0209073_102714052	3300027765	Agricultural Soil	AATRAALAGDLDVPAALRVAEEEGGQAARSLGALLGLW
Ga0209415_104500271	3300027905	Peatlands Soil	AVRAALASDLDVPAALRIAEDDSGGQAARVLGSLLGLW
Ga0302279_103745241	3300028783	Bog	AAVAAVRAALASDLDVPAALRIAEDNGGQAARVLGSLLGLW
Ga0302305_10707131	3300030046	Palsa	AGSGAAVAAVRAALASDLDVPAALRIAEDNGGQAARVLGSLLGLW
Ga0311353_114539072	3300030399	Palsa	AVSAVRAALAHDLDVPAALQIAADQGGQAARVLGSLLGLW
Ga0265754_10396271	3300031040	Soil	AMRAALANDLDVPAALNIAEDGGGQAARSLGSLLGLW
Ga0265760_102448781	3300031090	Soil	QAVAAMRAALANDLDVPAALNIAEDGGGQAARSLGSLLGLW
Ga0307495_101393491	3300031199	Soil	ERDVAGHGAPAVAAMRAALARDLDVPAALRIAEEEGGQAARSLGTLLGLW
Ga0302324_1013912873	3300031236	Palsa	TQSALANDLDVPAALKIAEEAGGAAARDLGAFLGLR
Ga0318516_101399122	3300031543	Soil	ARAAVRQIRAALRADLDVPAALAIAEEAGGDAARALRSLLGLW
Ga0306917_112900351	3300031719	Soil	RPDGGGDGGTAVAAMRAALARDLDVPTALQIAEEEGGQAARSLGTLLGLW
Ga0306917_114517132	3300031719	Soil	AVAAIRAALADDLDVPAALRIAEEEGGQAARSLGTLLGLW
Ga0318500_100532531	3300031724	Soil	RDLRVRADLDVPAALAIAEEAGGDAARTLRSLLGLW
Ga0318535_105501711	3300031764	Soil	RAALADDLDVPAALHVAENDGGQAARSLGSLLGLW
Ga0318521_103151992	3300031770	Soil	RAALADDLDVPTALRIAEEEGGQAARSLGTLLGLW
Ga0318546_102660992	3300031771	Soil	RIRAALRADLDVPAALAIAEEAGGDAARSLRSLLGLW
Ga0318550_102311041	3300031797	Soil	AGAVRAAMADDLDVPTALRIAEDDGGPAARGLGSLLGLW
Ga0318565_105709761	3300031799	Soil	AMRAALADDLDVPTALRIAEEEGGQAARSLGTLLGLW
Ga0318497_100877712	3300031805	Soil	ALTAMRAALADDLDVPAALRVAENDGGQAARSLGSLLGLW
Ga0318497_103539121	3300031805	Soil	RAALAGDLDVPAALHIAEEDGGPAARGLGSLLGLW
Ga0307473_110531212	3300031820	Hardwood Forest Soil	AARDGGAAMRAALAHDLDVPTALRIAEDEGGQAARSLGTLLGLW
Ga0318511_102409612	3300031845	Soil	AVAAMRAALADDLDVPAALRIAEEEGGQAARSLGTLLGLW
Ga0318511_106009471	3300031845	Soil	AVRQIRAALRADLDVPAALAIAEEAGGDAARTLRSLLGLW
Ga0306925_106503521	3300031890	Soil	ADADRAALADDLDVPAALRIAEDDGGPAARGLASLLGLW
Ga0306923_110227621	3300031910	Soil	AAGRIRAALRADLDVPAALAIAEEAGGDAARTLRSLLGLW
Ga0306921_100600681	3300031912	Soil	AAGAVRAAMADDLDVPTALRIAEDDGGPAARGLGSLLGLW
Ga0306926_127613151	3300031954	Soil	AMRAALADDLDVPAALRVAENDGGQAARSLGSLLGLW
Ga0318562_103410022	3300032008	Soil	VRAALADDLDVPAALRIAEDDGGPAARSLAALLGLW
Ga0318513_102788891	3300032065	Soil	PECAAGRGGDAAVAAMRAALARNLDVPTALRIAEEEGGQAARSLGTLLGLW
Ga0318525_104969981	3300032089	Soil	AVRAALADDLDVPAALRIAEEEGGPAARTLGSLLGLW
Ga0318518_104505381	3300032090	Soil	TAMRAALADDLDVPAALRVAENDGGQAARSLGSLLGLW
Ga0318518_107192051	3300032090	Soil	AAVRRIRAALRADLDVPAALAIAEETGGDAARTVRSLLGLW
Ga0311301_122015772	3300032160	Peatlands Soil	AMRAALANDLDVPAALNIAEDDGGQAARSLGSLLGLW
Ga0306920_1026182151	3300032261	Soil	MRAALADDLDVPAALHVAENDGGQAARSLGSLLGLW
Ga0335085_107520192	3300032770	Soil	DGGTAVVAMRAALANDLDVPTALRIAEEEGGQAARSLGTLLGLW
Ga0335079_119553071	3300032783	Soil	AAWPRMTRPSPRARTALASDLDVPAALHIAEEEGGPAARAVGSLLGLW
Ga0335078_106557222	3300032805	Soil	GGAGATAVVAMRAALANDLDVPTALRIAEEEGGQAARSLGTLLGLW
Ga0335070_120117871	3300032829	Soil	TAVGAMRAALADDLDVPTALRIAEEEGGQAARSLGTLLGLW
Ga0335081_100758506	3300032892	Soil	AADDGAAAAAARAALANDLDVPAALQIAETDGGPVARSLGSLLGLW
Ga0335081_102838422	3300032892	Soil	MTRPSPRARTALASDLDVPAALHIAEEEGGPAARAVGSLLGLW
Ga0335083_110665581	3300032954	Soil	TAMRAALAHDLDVPTALRIAEEEGGQAARSLGTLLGLW
Ga0335076_1000791211	3300032955	Soil	PMRAALAKDLDVPTALRIAEEEGGQAARSLGTLLGLW
Ga0335073_105299861	3300033134	Soil	RAALARDLDVPAALQTAEDAGGPAARALGSLLGLW

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign