Metagenome / Metatranscriptome Family F048383

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F048383
Family Type	Metagenome / Metatranscriptome
Number of Sequences	148
Average Sequence Length	48 residues
Representative Sequence	MELLLFIGLLSLVVSGGLLLAVMSNDPYAQDSTYSLADHELADLANPP
Number of Associated Samples	107
Number of Associated Scaffolds	148

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	75.69 %
% of genes near scaffold ends (potentially truncated)	39.86 %
% of genes from short scaffolds (< 2000 bps)	79.73 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (62.162 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (13.514 % of family members)
Environment Ontology (ENVO)	Unclassified (63.514 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (76.351 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 55.26% β-sheet: 0.00% Coil/Unstructured: 44.74%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 148 Family Scaffolds
PF08238	Sel1	2.70
PF04392	ABC_sub_bind	2.03
PF03466	LysR_substrate	2.03
PF00072	Response_reg	1.35
PF11746	DUF3303	1.35
PF09362	DUF1996	1.35
PF00665	rve	1.35
PF03372	Exo_endo_phos	1.35
PF08734	GYD	1.35
PF13817	DDE_Tnp_IS66_C	1.35
PF03401	TctC	0.68
PF13191	AAA_16	0.68
PF01979	Amidohydro_1	0.68
PF06666	DUF1173	0.68
PF00155	Aminotran_1_2	0.68
PF03404	Mo-co_dimer	0.68
PF13714	PEP_mutase	0.68
PF00005	ABC_tran	0.68
PF09361	Phasin_2	0.68
PF00144	Beta-lactamase	0.68
PF13181	TPR_8	0.68
PF13683	rve_3	0.68
PF02518	HATPase_c	0.68
PF08241	Methyltransf_11	0.68
PF07883	Cupin_2	0.68
PF14026	DUF4242	0.68
PF02353	CMAS	0.68
PF06779	MFS_4	0.68
PF01527	HTH_Tnp_1	0.68
PF00326	Peptidase_S9	0.68
PF13453	zf-TFIIB	0.68
PF12244	DUF3606	0.68

COG ID	Name	Functional Category	% Frequency in 148 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.03
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	1.35
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	1.35
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	1.35
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	1.35
COG4584	Transposase	Mobilome: prophages, transposons [X]	1.35
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.68
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.68
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.68
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.68
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	0.68
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.68
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.68

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.16 %
All Organisms	root	All Organisms	37.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.16 %
cellular organisms	root	All Organisms → cellular organisms	37.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.16 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.16 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	24.32 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.68 %
Cryptophyceae	class	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.16 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	12.16 %
Cryptomonadales	order	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales	0.68 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.68 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.16 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	8.78 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.68 %
Hemiselmidaceae	family	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae	0.68 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.68 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.16 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2.70 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	2.03 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.68 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.68 %
Hemiselmis	genus	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis	0.68 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.68 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.16 %
Rhizobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter	1.35 %
Schlegelella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella	0.68 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	0.68 %
Hemiselmis andersenii	species	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii	0.68 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.68 %
Rubrivivax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax	0.68 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.68 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.68 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.16 %
unclassified Rhizobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter	1.35 %
Rubrivivax gelatinosus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → Rubrivivax gelatinosus	0.68 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	0.68 %
Cupriavidus gilardii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus gilardii	0.68 %
Schlegelella koreensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella → Schlegelella koreensis	0.68 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	0.68 %
Hemiselmis andersenii	species	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii	0.68 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.68 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.16 %
Rhizobacter sp. Root404	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter → Rhizobacter sp. Root404	1.35 %
Planctomycetaceae bacterium SCGC AG-212-F19	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium SCGC AG-212-F19	0.68 %
Rubrivivax gelatinosus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → Rubrivivax gelatinosus	0.68 %
Cupriavidus gilardii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus gilardii	0.68 %
Schlegelella koreensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella → Schlegelella koreensis	0.68 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	0.68 %
Hemiselmis andersenii	species	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii	0.68 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.68 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.68 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_115492488	All Organisms → cellular organisms → Bacteria	1076	Open in IMG/M
3300004156\|Ga0062589_101735877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	624	Open in IMG/M
3300004157\|Ga0062590_100330658	Not Available	1206	Open in IMG/M
3300004479\|Ga0062595_102576095	Not Available	509	Open in IMG/M
3300005165\|Ga0066869_10132397	Not Available	526	Open in IMG/M
3300005290\|Ga0065712_10208017	Not Available	1083	Open in IMG/M
3300005290\|Ga0065712_10256965	Not Available	946	Open in IMG/M
3300005328\|Ga0070676_10010539	All Organisms → cellular organisms → Bacteria	5013	Open in IMG/M
3300005328\|Ga0070676_11513589	Not Available	517	Open in IMG/M
3300005330\|Ga0070690_101148501	Not Available	618	Open in IMG/M
3300005331\|Ga0070670_100002371	All Organisms → cellular organisms → Bacteria → Proteobacteria	15528	Open in IMG/M
3300005331\|Ga0070670_100217600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter → Rhizobacter sp. Root404	1661	Open in IMG/M
3300005331\|Ga0070670_101048444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	742	Open in IMG/M
3300005333\|Ga0070677_10494886	Not Available	662	Open in IMG/M
3300005338\|Ga0068868_100198129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella → Schlegelella koreensis	1673	Open in IMG/M
3300005338\|Ga0068868_100811470	Not Available	845	Open in IMG/M
3300005338\|Ga0068868_102056061	Not Available	543	Open in IMG/M
3300005345\|Ga0070692_10673253	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300005347\|Ga0070668_100474216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1080	Open in IMG/M
3300005353\|Ga0070669_100649369	Not Available	887	Open in IMG/M
3300005355\|Ga0070671_100000674	All Organisms → cellular organisms → Bacteria → Proteobacteria	24455	Open in IMG/M
3300005355\|Ga0070671_100014591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6354	Open in IMG/M
3300005355\|Ga0070671_101763631	Not Available	550	Open in IMG/M
3300005356\|Ga0070674_100068753	Not Available	2496	Open in IMG/M
3300005356\|Ga0070674_100386171	Not Available	1140	Open in IMG/M
3300005356\|Ga0070674_100829084	Not Available	801	Open in IMG/M
3300005364\|Ga0070673_100057117	All Organisms → cellular organisms → Bacteria → Proteobacteria	3083	Open in IMG/M
3300005364\|Ga0070673_100364157	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii	1286	Open in IMG/M
3300005365\|Ga0070688_101101892	Not Available	635	Open in IMG/M
3300005365\|Ga0070688_101545746	Not Available	541	Open in IMG/M
3300005438\|Ga0070701_10307406	Not Available	977	Open in IMG/M
3300005455\|Ga0070663_100740361	Not Available	838	Open in IMG/M
3300005456\|Ga0070678_100274698	All Organisms → cellular organisms → Bacteria → Proteobacteria	1422	Open in IMG/M
3300005456\|Ga0070678_100683063	Not Available	923	Open in IMG/M
3300005457\|Ga0070662_100661313	Not Available	882	Open in IMG/M
3300005459\|Ga0068867_101290813	Not Available	673	Open in IMG/M
3300005539\|Ga0068853_100652150	All Organisms → cellular organisms → Bacteria → Proteobacteria	1002	Open in IMG/M
3300005539\|Ga0068853_100665406	All Organisms → cellular organisms → Bacteria	992	Open in IMG/M
3300005543\|Ga0070672_101315206	Not Available	645	Open in IMG/M
3300005548\|Ga0070665_100148541	Not Available	2346	Open in IMG/M
3300005564\|Ga0070664_102340827	Not Available	507	Open in IMG/M
3300005718\|Ga0068866_10497523	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300005719\|Ga0068861_100100467	Not Available	2299	Open in IMG/M
3300005719\|Ga0068861_100118967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → Rubrivivax gelatinosus	2128	Open in IMG/M
3300005719\|Ga0068861_102659454	Not Available	505	Open in IMG/M
3300005841\|Ga0068863_100157312	Not Available	2176	Open in IMG/M
3300005841\|Ga0068863_100321043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1504	Open in IMG/M
3300005842\|Ga0068858_102588791	Not Available	501	Open in IMG/M
3300005843\|Ga0068860_100504113	All Organisms → cellular organisms → Bacteria	1209	Open in IMG/M
3300005844\|Ga0068862_101911038	Not Available	604	Open in IMG/M
3300006237\|Ga0097621_100035013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4009	Open in IMG/M
3300006881\|Ga0068865_101352280	Not Available	635	Open in IMG/M
3300006953\|Ga0074063_14225473	Not Available	1046	Open in IMG/M
3300009098\|Ga0105245_10816434	Not Available	971	Open in IMG/M
3300009148\|Ga0105243_10302092	Not Available	1451	Open in IMG/M
3300009156\|Ga0111538_11146756	Not Available	983	Open in IMG/M
3300009174\|Ga0105241_11983590	Not Available	572	Open in IMG/M
3300009551\|Ga0105238_10269922	All Organisms → cellular organisms → Bacteria	1682	Open in IMG/M
3300010147\|Ga0126319_1060185	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300010397\|Ga0134124_10115099	Not Available	2359	Open in IMG/M
3300011119\|Ga0105246_10104664	Not Available	2067	Open in IMG/M
3300012212\|Ga0150985_100528098	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300012899\|Ga0157299_10094153	Not Available	763	Open in IMG/M
3300012903\|Ga0157289_10369974	Not Available	529	Open in IMG/M
3300012916\|Ga0157310_10482919	Not Available	535	Open in IMG/M
3300012951\|Ga0164300_10506430	Not Available	691	Open in IMG/M
3300012955\|Ga0164298_10431201	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300012958\|Ga0164299_10713222	Not Available	703	Open in IMG/M
3300012960\|Ga0164301_10460839	Not Available	906	Open in IMG/M
3300012985\|Ga0164308_10211046	Not Available	1487	Open in IMG/M
3300013297\|Ga0157378_11357664	Not Available	753	Open in IMG/M
3300013306\|Ga0163162_12247464	Not Available	626	Open in IMG/M
3300013308\|Ga0157375_13004569	All Organisms → cellular organisms → Bacteria → Proteobacteria	563	Open in IMG/M
3300014325\|Ga0163163_10333805	Not Available	1571	Open in IMG/M
3300014325\|Ga0163163_12212696	Not Available	609	Open in IMG/M
3300014745\|Ga0157377_10468159	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300014745\|Ga0157377_10600213	All Organisms → cellular organisms → Bacteria → Proteobacteria	785	Open in IMG/M
3300015200\|Ga0173480_10663462	Not Available	649	Open in IMG/M
3300015201\|Ga0173478_10864196	Not Available	503	Open in IMG/M
3300015371\|Ga0132258_10441395	All Organisms → cellular organisms → Bacteria → Proteobacteria	3242	Open in IMG/M
3300015371\|Ga0132258_11775968	Not Available	1555	Open in IMG/M
3300015372\|Ga0132256_101052347	Not Available	929	Open in IMG/M
3300015372\|Ga0132256_101193264	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300015374\|Ga0132255_100166931	All Organisms → cellular organisms → Bacteria → Proteobacteria	3087	Open in IMG/M
3300017792\|Ga0163161_10862757	Not Available	765	Open in IMG/M
3300017792\|Ga0163161_11024288	Not Available	706	Open in IMG/M
3300017792\|Ga0163161_12005791	Not Available	515	Open in IMG/M
3300018083\|Ga0184628_10045193	Not Available	2215	Open in IMG/M
3300018083\|Ga0184628_10094063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus gilardii	1538	Open in IMG/M
3300018083\|Ga0184628_10410643	Not Available	707	Open in IMG/M
3300018083\|Ga0184628_10586759	Not Available	565	Open in IMG/M
3300018476\|Ga0190274_10002703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	10475	Open in IMG/M
3300018476\|Ga0190274_11025794	Not Available	901	Open in IMG/M
3300018476\|Ga0190274_11788445	Not Available	709	Open in IMG/M
3300018481\|Ga0190271_10005521	All Organisms → cellular organisms → Bacteria	8344	Open in IMG/M
3300019361\|Ga0173482_10667243	Not Available	533	Open in IMG/M
3300019362\|Ga0173479_10195974	Not Available	848	Open in IMG/M
3300021082\|Ga0210380_10166264	Not Available	992	Open in IMG/M
3300021082\|Ga0210380_10193453	Not Available	918	Open in IMG/M
3300022894\|Ga0247778_1092371	Not Available	799	Open in IMG/M
3300025271\|Ga0207666_1050441	Not Available	659	Open in IMG/M
3300025315\|Ga0207697_10376370	Not Available	631	Open in IMG/M
3300025321\|Ga0207656_10000177	All Organisms → cellular organisms → Bacteria → Proteobacteria	22947	Open in IMG/M
3300025893\|Ga0207682_10176081	Not Available	975	Open in IMG/M
3300025901\|Ga0207688_10476085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	780	Open in IMG/M
3300025907\|Ga0207645_10101386	Not Available	1857	Open in IMG/M
3300025908\|Ga0207643_10430478	All Organisms → cellular organisms → Bacteria → Proteobacteria	837	Open in IMG/M
3300025909\|Ga0207705_10490692	Not Available	954	Open in IMG/M
3300025918\|Ga0207662_10036918	All Organisms → cellular organisms → Bacteria → Proteobacteria	2858	Open in IMG/M
3300025923\|Ga0207681_10126540	Not Available	1882	Open in IMG/M
3300025924\|Ga0207694_10300880	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium SCGC AG-212-F19	1321	Open in IMG/M
3300025925\|Ga0207650_10050921	All Organisms → cellular organisms → Bacteria	3064	Open in IMG/M
3300025925\|Ga0207650_10063136	All Organisms → cellular organisms → Bacteria → Proteobacteria	2769	Open in IMG/M
3300025925\|Ga0207650_10164474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter → Rhizobacter sp. Root404	1760	Open in IMG/M
3300025925\|Ga0207650_11360197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	604	Open in IMG/M
3300025930\|Ga0207701_10388024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1204	Open in IMG/M
3300025931\|Ga0207644_10059045	All Organisms → cellular organisms → Bacteria → Proteobacteria	2773	Open in IMG/M
3300025931\|Ga0207644_10518562	Not Available	984	Open in IMG/M
3300025931\|Ga0207644_10600199	All Organisms → cellular organisms → Bacteria → Proteobacteria	914	Open in IMG/M
3300025934\|Ga0207686_10109021	Not Available	1864	Open in IMG/M
3300025935\|Ga0207709_10363196	All Organisms → cellular organisms → Bacteria	1097	Open in IMG/M
3300025938\|Ga0207704_11426282	Not Available	593	Open in IMG/M
3300025940\|Ga0207691_11010688	Not Available	694	Open in IMG/M
3300025941\|Ga0207711_10001820	All Organisms → cellular organisms → Bacteria → Proteobacteria	19466	Open in IMG/M
3300025942\|Ga0207689_10019519	All Organisms → cellular organisms → Bacteria → Proteobacteria	5712	Open in IMG/M
3300025942\|Ga0207689_11199413	Not Available	639	Open in IMG/M
3300025972\|Ga0207668_10148620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1811	Open in IMG/M
3300026023\|Ga0207677_11160325	Not Available	706	Open in IMG/M
3300026089\|Ga0207648_10202788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	1759	Open in IMG/M
3300026089\|Ga0207648_10762839	Not Available	899	Open in IMG/M
3300026095\|Ga0207676_10591206	Not Available	1065	Open in IMG/M
3300026095\|Ga0207676_10909381	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300026118\|Ga0207675_100210315	Not Available	1870	Open in IMG/M
3300026142\|Ga0207698_10176479	Not Available	1887	Open in IMG/M
3300026142\|Ga0207698_11398486	Not Available	715	Open in IMG/M
3300028381\|Ga0268264_11701302	Not Available	641	Open in IMG/M
3300028587\|Ga0247828_10697386	Not Available	632	Open in IMG/M
3300028587\|Ga0247828_11216956	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300028802\|Ga0307503_10030425	Not Available	1892	Open in IMG/M
3300028889\|Ga0247827_10887154	Not Available	598	Open in IMG/M
3300031548\|Ga0307408_100213094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1571	Open in IMG/M
3300031903\|Ga0307407_10009876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4468	Open in IMG/M
3300032074\|Ga0308173_11578883	Not Available	617	Open in IMG/M
3300033551\|Ga0247830_10867335	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	68.92%
Environmental	Environmental	31.08%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	68.92%
Terrestrial	Environmental → Terrestrial	26.35%
Aquatic	Environmental → Aquatic	4.73%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.49%
Rhizoplane	Host-Associated → Plants → Rhizoplane	30.41%
Soil	Environmental → Terrestrial → Soil	25.68%
Sediment	Environmental → Aquatic → Sediment	2.70%
Freshwater	Environmental → Aquatic → Freshwater	2.03%
Roots	Host-Associated → Plants → Roots	2.03%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.68%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	25.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	25.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	20.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.49%
Loam	Environmental → Terrestrial → Soil → Loam	4.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.05%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.70%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.03%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.35%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.35%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.68%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	25.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	25.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.49%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.05%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.70%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.03%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.03%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.35%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.35%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.68%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	13.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.49%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	9.46%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	8.11%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	6.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.38%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.38%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.38%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.38%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.38%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.03%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.03%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.03%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.35%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.35%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.35%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.35%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.35%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.68%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.68%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.68%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.68%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.68%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022894	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L049-202B-5	Environmental	Open in IMG/M
3300025271	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1154924882	3300000956	Soil	MDLLLLVGLSSLVASGGLLLGVLLNNPYAQHNTESLADHELADLANPP*
Ga0062589_1017358771	3300004156	Soil	LFIGLLSLVVSGVLLLAVMSNDAYAQDTTYSLADHELADLANPP*
Ga0062590_1003306583	3300004157	Soil	MELLLFIGLLSLVVSGGLLLAVMSNDPYSQDNTYSLADHELADLANPP*
Ga0062595_1025760951	3300004479	Soil	MDLLLLIGLSSLLVSGGLLFGVLLNNPYAQDNTKSLADHELADLANPP*
Ga0066869_101323971	3300005165	Soil	MNLFLFVLLLIVVSSLVVSGGLVLAVLHNDPYAQDSTYSLADHELADLANPP*
Ga0065712_102080174	3300005290	Miscanthus Rhizosphere	LLFIGLLSLVVSGGLLLAVVLNDPDSQGNTYSLADHELADLANPP*
Ga0065712_102569652	3300005290	Miscanthus Rhizosphere	MELLLFIGLLSLVVSGGLLVAVMSNDPYAQDNTYSLADHELADLVNPP*
Ga0070676_100105392	3300005328	Miscanthus Rhizosphere	MELLLFIGLLSLLVSGGLFWAAMSNDAYAGDSWSSLADHELADLANPP*
Ga0070676_115135891	3300005328	Miscanthus Rhizosphere	LLSLVVSGGLLLAVMSNDPYSQDNTYSLADHELADLANPP*
Ga0070690_1011485012	3300005330	Switchgrass Rhizosphere	MELFLFIVVSSLLVSGGLLLAVVLNNPYAQASTHSLADHELVDLANPP*
Ga0070670_10000237113	3300005331	Switchgrass Rhizosphere	MELLLFIGLLSLVVSGGLLLAVVLNDPDSQGNTYSLADHELADLANPP*
Ga0070670_1002176002	3300005331	Switchgrass Rhizosphere	MDVFLVIVVSSLVVSGALLVAVWDDGPYSPDNPNSLADHELADLAKPP*
Ga0070670_1010484441	3300005331	Switchgrass Rhizosphere	FILSLPLVVSGGFLLAVLVNDPYAQASTYALADHELADLANPP*
Ga0070677_104948861	3300005333	Miscanthus Rhizosphere	MNLFLFIFLFIVVSSLVVSGGLLLAVVLNDPWAQANTYSLADHELADLANPP*
Ga0068868_1001981291	3300005338	Miscanthus Rhizosphere	MDVLLSLFLFIVVSSLVVSGGLLLAVWDDGPGFQGNPNSLADHELADLANPP*
Ga0068868_1008114702	3300005338	Miscanthus Rhizosphere	MTLLVLLGLPSLVVSGALLLAVLLNDPYAQKNTYSLADHELFDLANPP*
Ga0068868_1020560612	3300005338	Miscanthus Rhizosphere	MELFLFIVVSSLLVSGGLLLAVVLNNPYAQASTHSLADHELVDL
Ga0070692_106732531	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MNLFLFIFLFIFLFIVVSSLVVSGGLLLAVWDDGPYSPDNPNSLADHELADLAN
Ga0070668_1004742162	3300005347	Switchgrass Rhizosphere	MGLLLFIFLFIVVSSLVVSGGLFLAVVLNDPDSQGNTYSLADHELADLANPP*
Ga0070669_1006493691	3300005353	Switchgrass Rhizosphere	FIVVSSLVVSGGLFWALMHNDAYAHQDNPYSLADHELADLANPP*
Ga0070671_10000067429	3300005355	Switchgrass Rhizosphere	MELLLFIGLLSLVVSGGLLVAVMSNDPYAQDNTYSLADHELADLANPP*
Ga0070671_1000145913	3300005355	Switchgrass Rhizosphere	MDFLLFMLSSPLVVSGGFVLAVLLNNPYAQASTYSPADHELADLANPP*
Ga0070671_1017636311	3300005355	Switchgrass Rhizosphere	MDVFLALFLFVVVSSLVVSGGLLLAVWDDGPGFQGNPNSLADHELADLANPP*
Ga0070674_1000687535	3300005356	Miscanthus Rhizosphere	MNAFLFLFLFIVVSSLVVSGGLLLAVWDDGPGFQGNPNSLADHELADLAHPP*
Ga0070674_1003861712	3300005356	Miscanthus Rhizosphere	MTLLLVIGQLSIFVSGALLLAVLLNDPYPQHSTYSLADHELADLANPP*
Ga0070674_1008290841	3300005356	Miscanthus Rhizosphere	MNLVLFIFLFIFLFIVVSSLVVSGGLFWALMHNDAYAHQDNPYSLADHELADLANPP*
Ga0070673_1000571171	3300005364	Switchgrass Rhizosphere	MDFLLFILSLPLVVSGGFLLAVLVNNPYAQASTYSLADHELADLANPP*
Ga0070673_1003641572	3300005364	Switchgrass Rhizosphere	MNLFLFIFLFIVVSSLVVSGGLFWALMHNDAYAHQDNPYSLADHELADLANPPGGKH*
Ga0070688_1011018921	3300005365	Switchgrass Rhizosphere	MELFLFIVVSSLLVSGGLLLAVVLNDSDSQGNTYSLADHELADLANPP*
Ga0070688_1015457461	3300005365	Switchgrass Rhizosphere	MGLFLFIVVSSLVVSGGLLWRVVLNDPYSQDNTYSLADHELAAL
Ga0070701_103074063	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MDLFLFIVVSSLVVSGGLLLGVVLNNPYAQRNTYSLADHELADLANPP*
Ga0070663_1007403612	3300005455	Corn Rhizosphere	MDLFLFIVVSSLVVSGGLLLAVWDDGPYSPDNPNSLADHELADLANPP*
Ga0070678_1002746982	3300005456	Miscanthus Rhizosphere	ARVSKGGRMDFLLFILSLPLVVSGGFLLAVLVNNPYAQASTYSLADHELADLANPP*
Ga0070678_1006830632	3300005456	Miscanthus Rhizosphere	MELLLFIGLLSLRVSGGLFWAAMSNDAYAGDSWSSLADHELADLANPP*
Ga0070662_1006613132	3300005457	Corn Rhizosphere	MDVLLSLFLFIVVSSLVVSGGLLLAVWDDGPGFQGNPNSLADHELADLAHPP*
Ga0068867_1012908131	3300005459	Miscanthus Rhizosphere	MDLFLFIFLFIVVSSLVVSGGLFWALMHNDAYAHQDNPYSLADHELADLANPPGGKH*
Ga0068853_1006521502	3300005539	Corn Rhizosphere	MNLFLFIFLFIVVSSLVVSGGLLLGVVLNDPYAQRNTYSLADHELADLANPP*
Ga0068853_1006654061	3300005539	Corn Rhizosphere	STGGRMELLLFIGLLSLVVSGGLLVAVMSNDPYAQDNTYSLADHELADLVNPP*
Ga0070672_1013152062	3300005543	Miscanthus Rhizosphere	MDLFLFIFLFIVVSSLVVSGGLFWALMHNDAYAHQDNPYSLADHELADLANPP*
Ga0070665_1001485416	3300005548	Switchgrass Rhizosphere	FLFIVVSSLVVSGGLLLAVVLNDPDSQGNTYSLADHELADLASPP*
Ga0070664_1023408271	3300005564	Corn Rhizosphere	MDVLLSLFLFIVVSSLVVSGGLLLAVWDDGPGFQGNPNSLADHELADLANP
Ga0068866_104975232	3300005718	Miscanthus Rhizosphere	SLLVSGGLLLAVVLNNPYAQASTHSLADHELVDLANPP*
Ga0068861_1001004671	3300005719	Switchgrass Rhizosphere	MELLLFIGLLSLRVSGGLFWAAMSNDAYAGDSWSSLADHE
Ga0068861_1001189671	3300005719	Switchgrass Rhizosphere	MDFFLFIVVSSLVVSGGLFWAAMSNDAYAGDSWSSLADHELADLANPP*
Ga0068861_1026594541	3300005719	Switchgrass Rhizosphere	MNLFLFIFLFIVVSSLVVSGGLFWALMHNDAYAHQDNPYSLADHELADLANPP*
Ga0068863_1001573124	3300005841	Switchgrass Rhizosphere	FLLFMLSSPLVVSGGFVLAVLLNNPYAQASTYSPADHELADLANPP*
Ga0068863_1003210432	3300005841	Switchgrass Rhizosphere	MDFLPFILSLPLVVSGGFLLAVLVNDPYAQASTYALADHELADLANPP*
Ga0068858_1025887911	3300005842	Switchgrass Rhizosphere	MDLLLFILSLPLVVSGGFLLAVLVNDPYAQASTYALADHELADLANPP*
Ga0068860_1005041131	3300005843	Switchgrass Rhizosphere	VSRGGRMELFLFIVVSSLLVSGGLLLAVVLNNPYAQASTHSLADHELVDLANPP*
Ga0068862_1019110382	3300005844	Switchgrass Rhizosphere	VSSLVVSGGLFWALMHNDAYAHQDNPYSLADHELADLANPPGGKH*
Ga0097621_1000350132	3300006237	Miscanthus Rhizosphere	MDFLLFILSLPLVVSGGFLLAVLVNDPYAQASTYALADHELADLANPP*
Ga0068865_1013522802	3300006881	Miscanthus Rhizosphere	FIVVSSLVVSGGLLLGVVLNNPDAQRNTYSPADHELADLANPP*
Ga0074063_142254731	3300006953	Soil	MELLLFIGLLSLVVSGGLLLAVMSNDPYAQDSTYSLADHELADLANPP*
Ga0105245_108164343	3300009098	Miscanthus Rhizosphere	VSGALLLAVLLNDPYPEHSTYSLADHELADLANPP*
Ga0105243_103020921	3300009148	Miscanthus Rhizosphere	MDLFLFIVVSSLVVSGGLLLAVWDDGPYSPDNPNSLADHELADLESPP*
Ga0111538_111467561	3300009156	Populus Rhizosphere	MDVLLSLFLFIVVSSLVVSGGLLLAVWDGGPGFQGNPISLADHELADLAHPP*
Ga0105241_119835901	3300009174	Corn Rhizosphere	MELLLFIGLLSLVVSGGLLLAVMSNDPYSQDNTYSLADHELAD
Ga0105238_102699222	3300009551	Corn Rhizosphere	MNAFLFLFLFIVVSSLVVSGGLLLAVWDDGPGFQGNPNSLADHELADLANPP*
Ga0126319_10601852	3300010147	Soil	RMDFFLFIVVSSLVVSGGLLLAVVLNDPDSQDSTYSLADHELADLANPP*
Ga0134124_101150994	3300010397	Terrestrial Soil	MELLLFIGLLSLRVSGGLFWAAMSNDAYAGDSWSSLADHELGDLANPP*
Ga0105246_101046644	3300011119	Miscanthus Rhizosphere	MDLFLFIVVSSLVVSGGLLWAVWDDGPGFQGNPNSLADHELADLANPP*
Ga0150985_1005280982	3300012212	Avena Fatua Rhizosphere	RMGLLLFILSLSLVVSGGLVLAVWLNDPHAQTSTYSLADHELADLTNPP*
Ga0150984_1225526661	3300012469	Avena Fatua Rhizosphere	RPRIGAIWERVSKGGRMGLLLFILSLSLVVSGGLVLAVWLNHPPAQTSTYSLADHELADLANPP*
Ga0157299_100941531	3300012899	Soil	MELLLFIGLLSLVVSGVLLLAVMSNDAYAQDTTYSLADHELADLANPP*
Ga0157289_103699742	3300012903	Soil	MGIVLFTFLFIVGSSLVVSGGLLLAVVLNDPDSQGNTYSLADHE
Ga0157310_104829191	3300012916	Soil	RGGRMELLLFIGLLSLVVSGGLLLAVVLNDPDSQGNTYSLADHELADLANPP*
Ga0164300_105064301	3300012951	Soil	MDFLLFILSLPLVVSGGFLLAVLLNNPYAQASTYSLADHELADLANPP*
Ga0164298_104312012	3300012955	Soil	MDFFLFIVVSSLVVSGGLLLAVWDDGPYSPDNQNSLADHELADLANPP*
Ga0164299_107132222	3300012958	Soil	MELLLFIGLLSLVVSGGLLLAVVLNDPDSQGNTYSLADHELADLA
Ga0164301_104608392	3300012960	Soil	MDVFLFILVFIVVPSLVVSGGLLLAVWDDGPYSPANPNSLADHELADLANPP*
Ga0164308_102110463	3300012985	Soil	MELLLFIGLLSLVVSGGLLLAVVLNDPDSQGNTYSLADHELADIAKPP*
Ga0157378_103745881	3300013297	Miscanthus Rhizosphere	QKQLSLSARPRIGAIYARVSKGGRMAFLLFILSLPLVVSGGFLLAVLVNNPYAQASTYSLADHELADLANPP*
Ga0157378_113576641	3300013297	Miscanthus Rhizosphere	LSLVVSGGLLLAVMSNDPYSQDNTYSLADHELADLANPP*
Ga0163162_122474641	3300013306	Switchgrass Rhizosphere	MNAFLFLFLFIVVSSLVVSGGLLLAVWDDGPGFQGNPNSLADHELADLA
Ga0157375_130045691	3300013308	Miscanthus Rhizosphere	MDVFLSILLFIVVSSLVVSGGLYWAAMYGNAYAEANTGGLADHELADLANPP*
Ga0163163_103338051	3300014325	Switchgrass Rhizosphere	PLVVSGGFVLAVLLNNPYAQASTYSPADHELADLANPP*
Ga0163163_122126962	3300014325	Switchgrass Rhizosphere	LLSLVVSGGLLVAVMSNDPYAQDNTYSLADHELADLVNPP*
Ga0157377_104681591	3300014745	Miscanthus Rhizosphere	IVVSSLLVSGGLLLAVVLNNPYAQASTHSLADHELVDLANPP*
Ga0157377_106002132	3300014745	Miscanthus Rhizosphere	GGRMNAILFLFLFIVLSSLVVSGGLLWAVWDDGPGFQGNPNSLADHELADLANPP*
Ga0173480_106634622	3300015200	Soil	MELLLFIGLLSLVVSGGLLLAVMSNDPYSQDNTYSLAD
Ga0173478_108641961	3300015201	Soil	MDFLLFMLSLPLVVSGGFLLAVLLNDPYAQASTYSLADHELADLANPP*
Ga0132258_104413953	3300015371	Arabidopsis Rhizosphere	MDLLLLIGLSSLVVSGGLLFGVLLNNPYAQDNTRSLADHELADLANPP*
Ga0132258_117759683	3300015371	Arabidopsis Rhizosphere	MDFLLFMLSSPLVVSGGFVLAVLLNNPYAQASTYSPADDELADLANPP*
Ga0132256_1010523472	3300015372	Arabidopsis Rhizosphere	MELLLFIGLLSLVVSGGLLLAVMSNDPYSQDNTYSLADHELADLANLP*
Ga0132256_1011932641	3300015372	Arabidopsis Rhizosphere	MDVFLFIVVSSLVVSGGLLLAVWDDGPYSPDNPNSLADHELADLANPP*
Ga0132255_1001669311	3300015374	Arabidopsis Rhizosphere	MDLLLLIGLSSLVVSGGLLFGVLLNNPYAQDNTKSLADHELADLANPP*
Ga0163161_108627572	3300017792	Switchgrass Rhizosphere	MDLFLFIVVSSLVVSGGLLLGVVLNNPYAQRNTYSLADHELADLANPP
Ga0163161_110242881	3300017792	Switchgrass Rhizosphere	MELLLFIGLLSLVVSGGLLLAVMSNDPYSQDNTYSLADHELADLANPP
Ga0163161_120057911	3300017792	Switchgrass Rhizosphere	MNLFLFIFLFIVVSSLVVSGGLFWALMHNDAYAHQDNPYSLADHELADLANPPGGKH
Ga0184628_100451934	3300018083	Groundwater Sediment	MDFLLFILSLQLIVSGGAHLAVWLNDPHAQASTYSLADHELADLANPP
Ga0184628_100940633	3300018083	Groundwater Sediment	MALLLFIGYLIVLSPLVVSAGLLLAVLLNDPYAQASTHSLADHELADLAN
Ga0184628_104106432	3300018083	Groundwater Sediment	MDFLLFVLSLQLIVCGGALLAVWLNDPYAQASTYSLTDHELADLANPP
Ga0184628_105867591	3300018083	Groundwater Sediment	LVVSGGFLLARLLNNPYAQTSTYSLADHELADLANPP
Ga0190274_100027034	3300018476	Soil	MDLFLSIFLFIVVSSLVVSGGLLLAVMLNDPYAQDSTYSLADHELADLANPP
Ga0190274_110257943	3300018476	Soil	SKGGRMDFLLFVLSLQLIVCGGALLAVWLNDPYAQASTYSLTDHELADLANPP
Ga0190274_117884452	3300018476	Soil	MDLFLFIVVSSLVVSGGLLLGVVLNNPYAQRNTYSLADHELADL
Ga0190271_100055212	3300018481	Soil	MDVFLFIFLFIVVSSLVVSGGLFLAMLHNGPYSQDSTYSLADHELADLANPP
Ga0173482_106672432	3300019361	Soil	MELLLFIGLLSLLVSGGLFWAAMSNDAYAGDSWSSLADHELADLANP
Ga0173479_101959743	3300019362	Soil	GLLSLVVSGGLLLAVVLNDPDSQGNTYSLADHELADLANPP
Ga0210380_101662642	3300021082	Groundwater Sediment	MALLLFIGYLIVLSPLVVSGGLLLAVLLNDPYAQASTHSLADHELADLANPP
Ga0210380_101934532	3300021082	Groundwater Sediment	MDFLLFILSLQLIVSGGALLAVWLNDPHAQASTYSLADHELADLANPP
Ga0247778_10923711	3300022894	Plant Litter	MELLLFIGLLSLVVSGGLLLAVVLNDPDSQGNTYSLADHELADLANPP
Ga0207666_10504412	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	MELLLFIGLLSLVVSGGLLLAVVLNDPDSQGNTYSL
Ga0207697_103763701	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	GRMNLFLFIFLFIFLFIVVSSLVVSGGLLLGVVLNNPDAQRNTYSPADHELADLANPP
Ga0207656_1000017714	3300025321	Corn Rhizosphere	MELLLFIGLLSLVVSGGLLVAVMSNDPYAQDNTYSLADHELADLVNPP
Ga0207682_101760811	3300025893	Miscanthus Rhizosphere	MELLLFIGLLSLLVSGGLFWAAMSNDAYAGDSWSSLADHELADLANPP
Ga0207688_104760851	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MELLLFIGLLSLRVSGGLFWAAMSNDAYAGDSWSSLADHEL
Ga0207645_101013861	3300025907	Miscanthus Rhizosphere	MDVFLVIVVSSLVVSGALLVAVWDDGPYSPDNPNSLADHELADLANPP
Ga0207643_104304781	3300025908	Miscanthus Rhizosphere	MELLLFIGLLSLVVSGGLLVAVMSNDPYAQDNTYSLADHELADLANPP
Ga0207705_104906922	3300025909	Corn Rhizosphere	MDVFLVIVVSSLVVSGALLVAVWDDGPYSPDDPNSLADHELADLAKPP
Ga0207662_100369184	3300025918	Switchgrass Rhizosphere	MELLLFIGLLSLRVSGGLFWAAMSNDAYAGDSWSSLADHELADLANPP
Ga0207681_101265401	3300025923	Switchgrass Rhizosphere	MELFLFIVVSSLLVSGGLLLAVVLNNPYAQASTHSLADHELVDLANPP
Ga0207694_103008803	3300025924	Corn Rhizosphere	MTLLLVIGQLSIFVSGALLLAVLLNDPYPQHSTYSLADHELADLANPP
Ga0207650_100509217	3300025925	Switchgrass Rhizosphere	MDFLLFILSLPLVVSGGFLLAVLVNDPYAQASTYALADHELADL
Ga0207650_100631363	3300025925	Switchgrass Rhizosphere	MDFLLFMLSSPLVVSGGFVLAVLLNNPYAQASTYSPADHELADLANPP
Ga0207650_101644744	3300025925	Switchgrass Rhizosphere	MDVFLVIVVSSLVVSGALLVAVWDDGPYSPDNPNSLADHELADLAKPP
Ga0207650_113601972	3300025925	Switchgrass Rhizosphere	VVSGGFLLAVLVNDPYAQASTYALADHELADLANPP
Ga0207701_103880241	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	FIVVSSLVVSGGLFWALMHNDAYAHQDNPYSLADHELADLANPP
Ga0207644_100590452	3300025931	Switchgrass Rhizosphere	MDLLLFILSLPLVVSGGFLLAVLVNDPYAQASTYALADHELADLANPP
Ga0207644_105185621	3300025931	Switchgrass Rhizosphere	ELLLFIGLLSLLVSGGLFWAAMSNDAYAGDSWSSLADHELADLANPP
Ga0207644_106001991	3300025931	Switchgrass Rhizosphere	MDFLLFILSLPLVVSGGFLLAVLVNNPYAQASTYSLADHELADLANPP
Ga0207686_101090212	3300025934	Miscanthus Rhizosphere	MDVLLSLFLFIVVSSLVVSGGLLLAVWDDGPGFQGNPNSLADHELADLAHPP
Ga0207709_103631961	3300025935	Miscanthus Rhizosphere	MNLFLFIFLFIFLFIVVSSLVVSGGLFWALMHNDAYAHQDNPYSLADHELADLANPP
Ga0207670_114652011	3300025936	Switchgrass Rhizosphere	FCALCCARVSRGGRMELLLFIGLLSLVVSGGLLLAVMSNDPYSQDNTYSLADHELADLANPP
Ga0207704_104330523	3300025938	Miscanthus Rhizosphere	REQFCALCCARVSRGGRMELLLFIGLLSLVVSGGLLLAVMSNDPYSQDNTYSLADHELADLANPP
Ga0207704_114262822	3300025938	Miscanthus Rhizosphere	MNLFLFIFLFIVVSSLVVSGGLFWALMHNDAYAHQDNPYSLADHELA
Ga0207691_110106882	3300025940	Miscanthus Rhizosphere	MDLFLFIVVSSLVVSGGLLLAVWDDGPYSPDNPNSLADHELADLASPP
Ga0207711_100018207	3300025941	Switchgrass Rhizosphere	MDVLLFMLSSPLVVSGGFVLAVLLNNPYAQASTYSPADHELADLANPP
Ga0207689_100195191	3300025942	Miscanthus Rhizosphere	MELLLFIGLLSLRVSGGLFWAAMSNDAYAGDSWSSLADHELADLA
Ga0207689_111994131	3300025942	Miscanthus Rhizosphere	MDFFLFIVVSSLVVSGGLFWAAMSNDAYAGDSWSSLADHELADLA
Ga0207668_101486202	3300025972	Switchgrass Rhizosphere	MGLLLFIFLFIVVSSLVVSGGLFLAVVLNDPDSQGNTYSLADHELADLANPP
Ga0207677_111603252	3300026023	Miscanthus Rhizosphere	MTLLVLLGLPSLVVSGALLLAVLLNDPYAQKNTYSLADHELFDLANPP
Ga0207648_102027881	3300026089	Miscanthus Rhizosphere	MDVLLSLFLFIVVSSLVVSGGLLLAVWDDGPGFQGNPNSLADHELADLANPP
Ga0207648_107628392	3300026089	Miscanthus Rhizosphere	MDLFLFIFLFIVVSSLVVSGGLFWALMHNDAYAHQDNPYSLADHELADLANPP
Ga0207676_105912063	3300026095	Switchgrass Rhizosphere	ALCCARVSRGGRMELLLFIGLLSLVVSGGLLLAVMSNDPYSQDNTYSLADHELADLANPP
Ga0207676_109093811	3300026095	Switchgrass Rhizosphere	VSTGGRMELLLFIGLLSLVVSGGLLVAVMSNDPYAQDNTYSLADHELADLVNPP
Ga0207675_1002103153	3300026118	Switchgrass Rhizosphere	MELLLFIGLLSLLVSGGLFWAAMSNDAYAGDSWSSLADHELADLA
Ga0207698_101764793	3300026142	Corn Rhizosphere	MDFLLLMLSSPLVVSGGFVLAVLLNNPYAQASTYSPADHELADLANPP
Ga0207698_113984861	3300026142	Corn Rhizosphere	MDFLLFMLSLPLVVSGGFLLAVLLNDPYAQASTYSLADHELADLANPP
Ga0268264_117013022	3300028381	Switchgrass Rhizosphere	MDLFLFIVVSSLVFIVVSSLVVSGGLLLGVVLNNPYAQRNTYSLADHELADLANPP
Ga0247828_106973861	3300028587	Soil	MELLLFIGLLSLVVSGGLLLAVVLNDPDSQGNTYSLADH
Ga0247828_112169562	3300028587	Soil	RMELLLFIGLLSLLVSGGLFWAAMSNDAYAGDNWSSLADHELADLANPP
Ga0307503_100304252	3300028802	Soil	MELLLFIGLLSLVVSGGLLLAVMSNDPYSQNNTYSLADHELADLANPP
Ga0247827_108871541	3300028889	Soil	SLVVSGGLFLAVVLNDPDSQGNTYSLADHELADLANPP
Ga0307408_1002130941	3300031548	Rhizosphere	MGLFLFILVSSLLVSGGLLLAVVVNDPYAQANTYSLADHELA
Ga0307407_100098767	3300031903	Rhizosphere	MGLFLFILVSSLLVSGGLLLAVVVNDPYAQANTYSLADHELADLANPP
Ga0308173_115788831	3300032074	Soil	MDFLLFLLSLPLIVSGGFLLAVLLNDPYAQASTYSLADHELADLANPP
Ga0247830_108673351	3300033551	Soil	VVSSLVVSGGLLLAVVLNDPYAQDNTYSLADHELADLANPP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F048383

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences