NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F047156

Metagenome / Metatranscriptome Family F047156

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F047156
Family Type Metagenome / Metatranscriptome
Number of Sequences 150
Average Sequence Length 47 residues
Representative Sequence MSNSGPEQRNYAEIERLEALLQTLRENPSTARETEAIREIGLEIALA
Number of Associated Samples 128
Number of Associated Scaffolds 150

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 77.33 %
% of genes near scaffold ends (potentially truncated) 96.67 %
% of genes from short scaffolds (< 2000 bps) 94.67 %
Associated GOLD sequencing projects 125
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (83.333 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(22.667 % of family members)
Environment Ontology (ENVO) Unclassified
(26.667 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(48.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 49.33%    β-sheet: 0.00%    Coil/Unstructured: 50.67%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 150 Family Scaffolds
PF00313CSD 51.33
PF01084Ribosomal_S18 4.00
PF00106adh_short 1.33
PF14023DUF4239 1.33
PF01176eIF-1a 1.33
PF01197Ribosomal_L31 1.33
PF02655ATP-grasp_3 0.67
PF07690MFS_1 0.67
PF00196GerE 0.67
PF03006HlyIII 0.67
PF14333DUF4389 0.67
PF04545Sigma70_r4 0.67
PF01545Cation_efflux 0.67
PF00326Peptidase_S9 0.67
PF11799IMS_C 0.67
PF07498Rho_N 0.67
PF12840HTH_20 0.67

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 150 Family Scaffolds
COG0238Ribosomal protein S18Translation, ribosomal structure and biogenesis [J] 4.00
COG0254Ribosomal protein L31Translation, ribosomal structure and biogenesis [J] 1.33
COG0361Translation initiation factor IF-1Translation, ribosomal structure and biogenesis [J] 1.33
COG0053Divalent metal cation (Fe/Co/Zn/Cd) efflux pumpInorganic ion transport and metabolism [P] 0.67
COG1230Co/Zn/Cd efflux system componentInorganic ion transport and metabolism [P] 0.67
COG1272Predicted membrane channel-forming protein YqfA, hemolysin III familyIntracellular trafficking, secretion, and vesicular transport [U] 0.67
COG3965Predicted Co/Zn/Cd cation transporter, cation efflux familyInorganic ion transport and metabolism [P] 0.67

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms83.33 %
UnclassifiedrootN/A16.67 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000955|JGI1027J12803_107266342All Organisms → cellular organisms → Bacteria2132Open in IMG/M
3300000956|JGI10216J12902_101869641All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria750Open in IMG/M
3300000956|JGI10216J12902_104174090All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria548Open in IMG/M
3300002028|A17_1312493All Organisms → cellular organisms → Bacteria → Proteobacteria576Open in IMG/M
3300004153|Ga0063455_101082563Not Available590Open in IMG/M
3300004156|Ga0062589_100061445All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales2174Open in IMG/M
3300004156|Ga0062589_101393097All Organisms → cellular organisms → Bacteria683Open in IMG/M
3300004156|Ga0062589_102378883Not Available546Open in IMG/M
3300004157|Ga0062590_100689273All Organisms → cellular organisms → Bacteria918Open in IMG/M
3300004463|Ga0063356_100919915All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter1238Open in IMG/M
3300004479|Ga0062595_101767072All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium586Open in IMG/M
3300004480|Ga0062592_100426494All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium1066Open in IMG/M
3300004480|Ga0062592_102099883All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria560Open in IMG/M
3300005179|Ga0066684_10190362All Organisms → cellular organisms → Bacteria1322Open in IMG/M
3300005328|Ga0070676_11418906Not Available533Open in IMG/M
3300005338|Ga0068868_101217734All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria697Open in IMG/M
3300005338|Ga0068868_101594979All Organisms → cellular organisms → Bacteria613Open in IMG/M
3300005341|Ga0070691_10574174Not Available662Open in IMG/M
3300005434|Ga0070709_10787044All Organisms → cellular organisms → Bacteria745Open in IMG/M
3300005440|Ga0070705_100747622All Organisms → cellular organisms → Bacteria → Proteobacteria773Open in IMG/M
3300005445|Ga0070708_101210892All Organisms → cellular organisms → Bacteria706Open in IMG/M
3300005457|Ga0070662_100951943All Organisms → cellular organisms → Bacteria → Proteobacteria734Open in IMG/M
3300005518|Ga0070699_101418246All Organisms → cellular organisms → Bacteria637Open in IMG/M
3300005518|Ga0070699_101435504All Organisms → cellular organisms → Bacteria633Open in IMG/M
3300005529|Ga0070741_11181937Not Available646Open in IMG/M
3300005546|Ga0070696_101820659Not Available526Open in IMG/M
3300005547|Ga0070693_100553639All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales824Open in IMG/M
3300005549|Ga0070704_100444474All Organisms → cellular organisms → Bacteria1115Open in IMG/M
3300005568|Ga0066703_10263269All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1046Open in IMG/M
3300005587|Ga0066654_10449330All Organisms → cellular organisms → Bacteria704Open in IMG/M
3300005598|Ga0066706_10918337All Organisms → cellular organisms → Bacteria681Open in IMG/M
3300005614|Ga0068856_100073728All Organisms → cellular organisms → Bacteria → Proteobacteria3380Open in IMG/M
3300005842|Ga0068858_102020940All Organisms → cellular organisms → Bacteria570Open in IMG/M
3300005843|Ga0068860_102304174All Organisms → cellular organisms → Bacteria559Open in IMG/M
3300005886|Ga0075286_1018523All Organisms → cellular organisms → Bacteria864Open in IMG/M
3300006032|Ga0066696_10301022Not Available1042Open in IMG/M
3300006042|Ga0075368_10571217All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria510Open in IMG/M
3300006196|Ga0075422_10563925All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria523Open in IMG/M
3300006573|Ga0074055_11574717All Organisms → cellular organisms → Bacteria743Open in IMG/M
3300006579|Ga0074054_10869764All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium722Open in IMG/M
3300006800|Ga0066660_11600369Not Available516Open in IMG/M
3300006844|Ga0075428_100006164All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria13343Open in IMG/M
3300006844|Ga0075428_101072349All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium851Open in IMG/M
3300006852|Ga0075433_10721640All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium872Open in IMG/M
3300006854|Ga0075425_101155812All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium880Open in IMG/M
3300006880|Ga0075429_100146187All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2069Open in IMG/M
3300006904|Ga0075424_101039491All Organisms → cellular organisms → Bacteria873Open in IMG/M
3300007076|Ga0075435_100476728All Organisms → cellular organisms → Bacteria1077Open in IMG/M
3300009012|Ga0066710_101364827All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1099Open in IMG/M
3300009147|Ga0114129_10158584All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3093Open in IMG/M
3300009147|Ga0114129_12636679Not Available599Open in IMG/M
3300009147|Ga0114129_12826097Not Available576Open in IMG/M
3300009156|Ga0111538_12678022All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria625Open in IMG/M
3300009176|Ga0105242_13166410All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria511Open in IMG/M
3300009177|Ga0105248_10792703All Organisms → cellular organisms → Bacteria1069Open in IMG/M
3300009177|Ga0105248_11054499All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria918Open in IMG/M
3300010038|Ga0126315_10121913All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1520Open in IMG/M
3300010039|Ga0126309_10317313All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria906Open in IMG/M
3300010044|Ga0126310_10376263All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1004Open in IMG/M
3300010154|Ga0127503_10362911All Organisms → cellular organisms → Bacteria1134Open in IMG/M
3300010301|Ga0134070_10072072All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1181Open in IMG/M
3300010304|Ga0134088_10611225All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria543Open in IMG/M
3300010326|Ga0134065_10087019All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1019Open in IMG/M
3300010329|Ga0134111_10485419All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria540Open in IMG/M
3300010364|Ga0134066_10278937All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria591Open in IMG/M
3300010375|Ga0105239_10310382All Organisms → cellular organisms → Bacteria1778Open in IMG/M
3300010857|Ga0126354_1107557All Organisms → cellular organisms → Bacteria746Open in IMG/M
3300010862|Ga0126348_1304097All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria923Open in IMG/M
3300011119|Ga0105246_11984126Not Available561Open in IMG/M
3300012199|Ga0137383_10379007All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1036Open in IMG/M
3300012201|Ga0137365_11227691All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria535Open in IMG/M
3300012380|Ga0134047_1228733All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria929Open in IMG/M
3300012515|Ga0157338_1090758Not Available509Open in IMG/M
3300012683|Ga0137398_10742629All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria684Open in IMG/M
3300012883|Ga0157281_1010236All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1030Open in IMG/M
3300012896|Ga0157303_10163265Not Available610Open in IMG/M
3300012903|Ga0157289_10353837All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria537Open in IMG/M
3300012914|Ga0157297_10032661All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1256Open in IMG/M
3300012951|Ga0164300_10651985Not Available630Open in IMG/M
3300012951|Ga0164300_11181166Not Available506Open in IMG/M
3300012976|Ga0134076_10575091All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria523Open in IMG/M
3300012977|Ga0134087_10065480All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1462Open in IMG/M
3300012984|Ga0164309_10522995All Organisms → cellular organisms → Bacteria912Open in IMG/M
3300012984|Ga0164309_11688648Not Available543Open in IMG/M
3300012985|Ga0164308_10626712All Organisms → cellular organisms → Bacteria → Proteobacteria918Open in IMG/M
3300013100|Ga0157373_11369940All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria537Open in IMG/M
3300013296|Ga0157374_10693719All Organisms → cellular organisms → Bacteria1031Open in IMG/M
3300013308|Ga0157375_11003000All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria975Open in IMG/M
3300014166|Ga0134079_10384155All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria648Open in IMG/M
3300014325|Ga0163163_10517556All Organisms → cellular organisms → Bacteria → Proteobacteria1255Open in IMG/M
3300015077|Ga0173483_10789009Not Available547Open in IMG/M
3300015357|Ga0134072_10465449All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria513Open in IMG/M
3300015374|Ga0132255_101063287Not Available1215Open in IMG/M
3300017659|Ga0134083_10074400All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1310Open in IMG/M
3300018061|Ga0184619_10066701All Organisms → cellular organisms → Bacteria1585Open in IMG/M
3300018076|Ga0184609_10316870All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria729Open in IMG/M
3300018433|Ga0066667_10550347All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria957Open in IMG/M
3300018433|Ga0066667_10786771All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria807Open in IMG/M
3300018469|Ga0190270_11702795Not Available684Open in IMG/M
3300018482|Ga0066669_10499210All Organisms → cellular organisms → Bacteria → Terrabacteria group1053Open in IMG/M
3300018482|Ga0066669_10828198All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria822Open in IMG/M
3300018482|Ga0066669_11735907Not Available574Open in IMG/M
3300018482|Ga0066669_12322767All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria512Open in IMG/M
3300019279|Ga0184642_1465396All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria532Open in IMG/M
3300019279|Ga0184642_1700122All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria570Open in IMG/M
3300019885|Ga0193747_1016164All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1824Open in IMG/M
3300019887|Ga0193729_1122328All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria968Open in IMG/M
3300019996|Ga0193693_1038682All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria805Open in IMG/M
3300022195|Ga0222625_1195746All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria973Open in IMG/M
3300022756|Ga0222622_10212591All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1290Open in IMG/M
3300022756|Ga0222622_10737442All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria717Open in IMG/M
3300024055|Ga0247794_10302767All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria538Open in IMG/M
3300024187|Ga0247672_1037957All Organisms → cellular organisms → Bacteria788Open in IMG/M
3300025901|Ga0207688_10189374All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1230Open in IMG/M
3300025918|Ga0207662_10359843All Organisms → cellular organisms → Bacteria979Open in IMG/M
3300025933|Ga0207706_10478869All Organisms → cellular organisms → Bacteria → Proteobacteria1076Open in IMG/M
3300025935|Ga0207709_10689546All Organisms → cellular organisms → Bacteria816Open in IMG/M
3300025938|Ga0207704_10207260All Organisms → cellular organisms → Bacteria1440Open in IMG/M
3300025949|Ga0207667_10895297All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria879Open in IMG/M
3300025961|Ga0207712_11873899Not Available537Open in IMG/M
3300026301|Ga0209238_1243646All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria533Open in IMG/M
3300026315|Ga0209686_1158544All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria675Open in IMG/M
3300026331|Ga0209267_1287640All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria550Open in IMG/M
3300026548|Ga0209161_10052048All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2671Open in IMG/M
3300027821|Ga0209811_10384904Not Available543Open in IMG/M
3300028597|Ga0247820_11132540Not Available563Open in IMG/M
3300028719|Ga0307301_10131563All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria801Open in IMG/M
3300028791|Ga0307290_10339843All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria549Open in IMG/M
3300028793|Ga0307299_10406010All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria510Open in IMG/M
3300028799|Ga0307284_10087723All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1148Open in IMG/M
3300028807|Ga0307305_10214441Not Available883Open in IMG/M
3300028810|Ga0307294_10380859All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria527Open in IMG/M
3300028814|Ga0307302_10412023All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria668Open in IMG/M
3300028814|Ga0307302_10528650Not Available586Open in IMG/M
3300028828|Ga0307312_11166590All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria509Open in IMG/M
3300030988|Ga0308183_1033427All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria955Open in IMG/M
3300031081|Ga0308185_1029633All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria658Open in IMG/M
3300031095|Ga0308184_1052616All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria531Open in IMG/M
3300031114|Ga0308187_10183159All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria722Open in IMG/M
3300031366|Ga0307506_10079309All Organisms → cellular organisms → Bacteria1032Open in IMG/M
3300031421|Ga0308194_10144553All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria728Open in IMG/M
3300031858|Ga0310892_10012106All Organisms → cellular organisms → Bacteria3562Open in IMG/M
3300031995|Ga0307409_101727765All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria654Open in IMG/M
3300032205|Ga0307472_100444748All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1100Open in IMG/M
3300032205|Ga0307472_100948400All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria801Open in IMG/M
3300034644|Ga0370548_053858All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria724Open in IMG/M
3300034644|Ga0370548_056013All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria714Open in IMG/M
3300034680|Ga0370541_013177All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria861Open in IMG/M
3300034680|Ga0370541_033084All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria630Open in IMG/M
3300034681|Ga0370546_074063All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria562Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil22.67%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere8.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil7.33%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil7.33%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil5.33%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil4.67%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment2.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.00%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil2.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere2.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.00%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.33%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.33%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.33%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.33%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.33%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.33%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.33%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.33%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.33%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.33%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.33%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil1.33%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.67%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.67%
Permafrost And Active Layer SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost And Active Layer Soil0.67%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.67%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.67%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.67%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.67%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.67%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.67%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.67%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere0.67%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.67%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.67%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.67%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.67%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.67%

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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300002028Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies - Sample_A17EnvironmentalOpen in IMG/M
3300004153Grasslands soil microbial communities from Hopland, California, USA (version 2)EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005587Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300005886Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006042Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3Host-AssociatedOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006573Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006579Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300010038Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106EnvironmentalOpen in IMG/M
3300010039Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56EnvironmentalOpen in IMG/M
3300010044Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60EnvironmentalOpen in IMG/M
3300010154Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015EnvironmentalOpen in IMG/M
3300010364Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010857Boreal forest soil eukaryotic communities from Alaska, USA - W1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010862Boreal forest soil eukaryotic communities from Alaska, USA - C4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012380Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012515Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610Host-AssociatedOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012883Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1EnvironmentalOpen in IMG/M
3300012896Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2EnvironmentalOpen in IMG/M
3300012903Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1EnvironmentalOpen in IMG/M
3300012914Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300015077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)EnvironmentalOpen in IMG/M
3300015357Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300018061Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1EnvironmentalOpen in IMG/M
3300018076Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coexEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019279Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019885Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2EnvironmentalOpen in IMG/M
3300019887Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2EnvironmentalOpen in IMG/M
3300019996Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2EnvironmentalOpen in IMG/M
3300022195Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300024055Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6EnvironmentalOpen in IMG/M
3300024187Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK13EnvironmentalOpen in IMG/M
3300025901Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)Host-AssociatedOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025949Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026315Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)EnvironmentalOpen in IMG/M
3300026331Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300027821Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028597Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14EnvironmentalOpen in IMG/M
3300028719Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182EnvironmentalOpen in IMG/M
3300028791Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144EnvironmentalOpen in IMG/M
3300028793Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159EnvironmentalOpen in IMG/M
3300028799Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123EnvironmentalOpen in IMG/M
3300028807Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186EnvironmentalOpen in IMG/M
3300028810Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151EnvironmentalOpen in IMG/M
3300028814Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183EnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300030988Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031081Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_159 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031095Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_158 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031114Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031366Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_SEnvironmentalOpen in IMG/M
3300031421Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031995Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2Host-AssociatedOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300034644Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034680Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034681Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI1027J12803_10726634223300000955SoilVASPEQRNYEEIERLEGLLTELRSNRSTARETEAIREIGLEIAIAVREVG
JGI10216J12902_10186964113300000956SoilMVSPEQRNFAEIERLESLLTELRSGKSTPRQTEAIREIGLEIAI
JGI10216J12902_10417409013300000956SoilMSNNGPEQKNYAEIERLELLLSELRGSPSTARETEAIREIGLEIALAVRE
A17_131249313300002028Permafrost And Active Layer SoilMSPSDPGQRNHGEIERLERLLEDLRANPSTARETEAI
Ga0063455_10108256323300004153SoilVSRTPEQRNYAEIERLESLLVALRANASTARETEAIREIGFEIAIAV
Ga0062589_10006144513300004156SoilMGNSSPEQKNYAEIERLEQLLGELRQNPSTARETEAIREI
Ga0062589_10139309713300004156SoilMANSPEQRNYAEIERLEQLLEELRRNRSTARETEAIREIGLEIAIAVRE
Ga0062589_10237888323300004156SoilVSRPEQKNFAEIARLEGLLTELRANAATARETEAIREIGL
Ga0062590_10068927313300004157SoilMALNNPEQKNYAEIERLEGLLVQLRSSASTARETEAIREIGLEIALAIREVGAMLVNV
Ga0063356_10091991533300004463Arabidopsis Thaliana RhizosphereMTLDNPEQKNYAEIERLERLLDELRASASTARETEAIREIGLEIA
Ga0062595_10176707213300004479SoilMTSPEEKNYAEIERLEGLLAKLRAVNETTTPRETEAIREIGLEIAL
Ga0062592_10042649433300004480SoilMGSPERKNYAEIERLEHLLAELRSGKSTPRQTEAIREIGLEIAIAIREVGAMLTNV
Ga0062592_10209988313300004480SoilMSSNSPEQRNYGEIERLETLLQDLRANPSTARETEAIREIGLEIALAV
Ga0066684_1019036253300005179SoilMPNSGPEQKNFAEIERLEGLLHTLRESHSTARETEAIREIGLEIAL
Ga0070676_1141890613300005328Miscanthus RhizosphereMNSPEQKNYAEIERLEALLAALRANAGTTRETEAIREIGFEIAV
Ga0068868_10121773413300005338Miscanthus RhizosphereMGSPERKNYAEIERLEHLLAELRSGKSTPRQTEAIREIGL
Ga0068868_10159497933300005338Miscanthus RhizosphereMSVNGPEQKNYAEIERLELLLSALRDSASTPREPEAIREIGLEIALAVREV
Ga0070691_1057417433300005341Corn, Switchgrass And Miscanthus RhizosphereMASNNPEQKNYAEIDRLERLLEELRASASTARETEAIREIGLEIALAVREVGAML
Ga0070709_1078704413300005434Corn, Switchgrass And Miscanthus RhizosphereVSVNGPEQKNYAEIERLELLLSALRDSASTPREPEAIREIGLEIALAVREVGAM
Ga0070705_10074762213300005440Corn, Switchgrass And Miscanthus RhizosphereVASPEQRNYEEIERLEGLLTELRGNRSTARETEAIREIGLEIAIAVREVGAM
Ga0070708_10121089213300005445Corn, Switchgrass And Miscanthus RhizosphereMSSPEERNYAEIERLEALLVALRANASTARETEAIREIGLEIAI
Ga0070662_10095194313300005457Corn RhizosphereVASPEQRNYEEIERLEGLLTELRGNRSTARETEAIREIGLEI
Ga0070699_10141824633300005518Corn, Switchgrass And Miscanthus RhizosphereMSSNSPEQRNYGEIERLETLLQDLRANPSTARETEAIREIGLEIALA
Ga0070699_10143550413300005518Corn, Switchgrass And Miscanthus RhizosphereVASPEQQNYEQIERLQALLTELRASASTARETEAIREIGLEIAV
Ga0070741_1118193713300005529Surface SoilMTSPEEKNYDEIVRLEARLRELRSSTSTPRETEALREAGLEIALAVREVGAMLVN
Ga0070696_10182065933300005546Corn, Switchgrass And Miscanthus RhizosphereVSSPEQRNYTEIERLESLLAALRARPRTDDQADALREVGLEIALAVR
Ga0070693_10055363913300005547Corn, Switchgrass And Miscanthus RhizosphereMTSPEQRNYLEIERLEQLLVDLRANRSTARETEAIREIGFEI
Ga0070704_10044447413300005549Corn, Switchgrass And Miscanthus RhizosphereVASPEQQNYEQIERLQALLTELRASASTARETEAIREIGLEIAVAIREVGAMLVNV
Ga0066703_1026326913300005568SoilMPNNGLGQKNYAEIERLETLLQTLRESASTARETEAI
Ga0066654_1044933013300005587SoilMPNNGLEQKNYAEIERLETLLQTLRESASTARETEAIREIG
Ga0066706_1091833713300005598SoilMSNSGPERKNYAEIERLESLLETLRENPSTAREREAIREI
Ga0068856_10007372863300005614Corn RhizosphereVASPEQRNYEEIERLEGLLTELRGNRSTARETEAIREIGLEIAIAV
Ga0068858_10202094013300005842Switchgrass RhizosphereVASPEQQNYEQIERLQALLTELRASASTARETEAIREIGLEIAVAI
Ga0068860_10230417413300005843Switchgrass RhizosphereVASPEQQNYEQIERLQALLTELRASASTARETEAIREIGLEIA
Ga0075286_101852313300005886Rice Paddy SoilMGSPEQRNYDQIERLERLLTALRRDPSTARETEAIREIGLEIAIAIREVG
Ga0066696_1030102243300006032SoilMTNPEEKNYAEILRLEELLTELRANPSTARETEAIREIGLEIAIAVREV
Ga0075368_1057121723300006042Populus EndosphereMASNNPEQKNYAEIDRLERLLEELRASASTARETEAIREIGLEIALAVRE
Ga0075422_1056392533300006196Populus RhizosphereMASNNPEQKNYAEIDRLERLLEELRASASTARETEAIR
Ga0074055_1157471733300006573SoilVASPEQRNYEEIERLEGLLTELRGNRSTARETEAIREIGLEIAI
Ga0074054_1086976443300006579SoilVNSPEQKNYVEIERLEALLAALRANAGTARETEAIREIGLEIAIA
Ga0066660_1160036913300006800SoilMSSPEQKNYEEIERLEGLVGELRANPSTAPEIDAIREVGLELAIAV
Ga0075428_100006164113300006844Populus RhizosphereMSNPETKNYAEIERLEASLAALRQAGGTARETEAIREIGLEIALAIREVGAMLGP*
Ga0075428_10107234913300006844Populus RhizosphereMASNNPEQKNYAEIDRLERLLEELRASASTARETEAIREIGLEIALAVR
Ga0075433_1072164013300006852Populus RhizosphereMASNNPEQKNYAEIDRLERLLEELRASASTARETE
Ga0075425_10115581213300006854Populus RhizosphereMASNNPEQKNYAEIDRLERLLEELRASASTARETEAI
Ga0075429_10014618753300006880Populus RhizosphereMSNPETKNYTEIERLEAALAALRQAGGTARETEAIREIGLEIALAIREVGAMLGP*
Ga0075424_10103949113300006904Populus RhizosphereMNSPEERNFAEIERLEQLLATLRDNAGTARETEAIREIGLEIAIAVREVGAMLVNVGW
Ga0075435_10047672813300007076Populus RhizosphereLNSNPTQKNYAEIERLEQLLRELRDDAMTPRETEAIREIGLEIALA
Ga0066710_10136482743300009012Grasslands SoilMSDSPEQKNFAEIERLEKLLGELRSNPSTARETEAIREIGLEIAVAIREVG
Ga0114129_1015858433300009147Populus RhizosphereMSNPETKNHAEIERLAASLAALRQAGGTARETEAIREIGLEIALAIREVGAMLGP*
Ga0114129_1263667943300009147Populus RhizosphereLNSNPTQKNYAEIERLEQLLRELRDDAMTPRETEAIREIGLEIALAIREVG
Ga0114129_1282609743300009147Populus RhizosphereLNSNPTQKNYAEIERLEQLLRELRDDAMTPRETEAIREIGLEI
Ga0111538_1267802223300009156Populus RhizosphereMSNPETKNYAEIERLAASLAALRQAGGTARETEAIREIGLEIALAIREVGAMLGP*
Ga0105242_1316641023300009176Miscanthus RhizosphereMASDNPEQKNYAEIERLEGMLVQLRASASTARETEAIREIGLEIALAIREVGAMLVNV
Ga0105248_1079270343300009177Switchgrass RhizosphereMNSPEERNFAEIERLEQLLATLRDNAGTARETEAIREIGLEI
Ga0105248_1105449943300009177Switchgrass RhizosphereMSNSGPERKNYAEIERLEALLQTLRENPSTARETEAIREIGLEIALAVRE
Ga0126315_1012191343300010038Serpentine SoilMALNNPEQKNYAEVARLERLLDELRASASTARETEAI
Ga0126309_1031731313300010039Serpentine SoilMASSPEQKNYSEIERLEQLLEDLRANRSTARETEAIREI
Ga0126310_1037626333300010044Serpentine SoilMSTSPEQKNYIEIERLERLLGELRGDRAPGRETEAIREIGLEIAVAIREVG
Ga0127503_1036291113300010154SoilVNSPEQKNYAEIERLEALLAALRANAGTTRETEAIREIGFEIAVAIREVGAMLINVG
Ga0134070_1007207253300010301Grasslands SoilMSNSRPEQRNYAEIERLETLLQTLRENPSTARETEAIR
Ga0134088_1061122533300010304Grasslands SoilMSDSPEQKNFAEIERLEKLLGELRSNPSTARETEAIREIGL
Ga0134065_1008701943300010326Grasslands SoilMPNSGPEQKNFAEIERLEGLLHTLRESHSTARETEAIREIGLEIA
Ga0134111_1048541933300010329Grasslands SoilMSTNPEQKNYVEIDRIERLLAELRQNPSTARETEAIREIGLEIA
Ga0134066_1027893713300010364Grasslands SoilLNSNPAQKNYAEIERLEQLLRELRDDATTPRETEAIREIGFEIAL
Ga0105239_1031038213300010375Corn RhizosphereMSNSGPEQRNYAEIERLEALLQTLRENPSTARETEA
Ga0126354_110755713300010857Boreal Forest SoilVSRTPEQHNYEEIERLETLLAALRANSSTARETEAIREIG
Ga0126348_130409713300010862Boreal Forest SoilMSSSSPEQRNYGEIERLENLLQDLRANPSTARETEAIREIGLEIALA
Ga0105246_1198412613300011119Miscanthus RhizosphereVAPVDQTPEQRNYVEIARLEGLLTSLRAEPSTARETEAIREIGLEIAIAVREVGAML
Ga0137383_1037900713300012199Vadose Zone SoilMSSNSPEQRNYGEIERLENLLEDLRANPSTARETEAIREIGLEIALAV
Ga0137365_1122769133300012201Vadose Zone SoilMSNSRPEQRNYAEIERLETLLQTLRENPSTARETEAIREIGLEIALAVREVG
Ga0134047_122873313300012380Grasslands SoilMSNSRPEQRNYAEIERLETLLQTLRENPSTARETEAIREIGLEIALAVREVGAMLINVG
Ga0157338_109075813300012515Arabidopsis RhizosphereMANSSPEQRNYAEIERLERLLGELRQNASTARETEAIREIGLEIAIAI
Ga0137398_1074262933300012683Vadose Zone SoilMSSNSPEQRNYGEIERLENLLQDLRANPSTARETEAIREIGLEI
Ga0157281_101023613300012883SoilMTLDNPEQKNYAEIERLERLLDELRASASTARETEAIREIGLEIALAVREVGAMLVNV
Ga0157303_1016326533300012896SoilMNSPEERNFAEIERLEQLLATLRDNAGTARETEAIREIGLEIAIAVREVGAMLV
Ga0157289_1035383713300012903SoilMGSPERKNYAEIERLEHLLAELRSGKSTPRQTEAIREIGLEIAIAIREVGAMLTNVG
Ga0157297_1003266143300012914SoilMTLDNPEQKNYAEIERLERLLDELRASASTARETEAIREIGLEIAL
Ga0164300_1065198513300012951SoilMPSDSSPEQKNYAEIERLEKLLTQLRSSPSTARETE
Ga0164300_1118116633300012951SoilMSSNSPEQRNYVEIERLENLLQDLRANPSTARETEAIREICLEIALAVREVG
Ga0134076_1057509133300012976Grasslands SoilMSNSGPERKNYAEIERLESLLETLRENPSTAREREAIREIGLEIALAVREVGAML
Ga0134087_1006548053300012977Grasslands SoilMSSNTPEQKNYTEIERLEQLLSDLRDNRSTARETEAIREIGL
Ga0164309_1052299513300012984SoilVTNPEQKNYAEILRLEARLHELRAGTPTELDGEALREAGLEIALAVREVGAML
Ga0164309_1168864833300012984SoilVSRTPEQHNYEEIERLETLLAALRANSSTARETEAIREIGLE
Ga0164308_1062671213300012985SoilVASPEQRNYEEIERLEALLTELRVNRSTARETEAIREI
Ga0157373_1136994013300013100Corn RhizosphereMGSPERKNYAEIERLEHLLAELRSGKSTPRQTEAIREI
Ga0157374_1069371943300013296Miscanthus RhizosphereMNSPEQKNYAEIERLEALLAALRANAGTTRETEAIREI
Ga0157375_1100300043300013308Miscanthus RhizosphereMSNSGPERKNYAEIERLEALLQTLRENPSTARETEAIREIGLEIALA
Ga0134079_1038415533300014166Grasslands SoilMPNNGLEQKNYAEIERLETLLQTLRESASTARETEAIREI
Ga0163163_1051755633300014325Switchgrass RhizosphereVASPEQRNYEEIERLEALLTELRGNRSTARETEAIREIGLEIAIAVREVGAM
Ga0173483_1078900933300015077SoilMNSPEQKNYAEIERLEALLAALREERGTPRQTEAI
Ga0134072_1046544913300015357Grasslands SoilMPNSGPEQKNFAEIERLEGLLHTLRESHSTARETEAIREIGLEIALAMREVGAML
Ga0132255_10106328733300015374Arabidopsis RhizosphereVSRPEQKNFAEIARLEGLLTELRANAATARETEAIREIGLEIAIAVREV
Ga0134083_1007440013300017659Grasslands SoilMSNSRPEQRNYAEIERLETLLQTLRENPSTARETEAIREIGLEIALAVR
Ga0184619_1006670163300018061Groundwater SedimentMSNSGPERKNYAEIERLETLLQTLRENPSTARETEAIREIGLEIALAVREVGAMLINV
Ga0184609_1031687013300018076Groundwater SedimentMSNSGPEQRNYTEIERLETLLQTLRENPSTARETEAIREIGLEIALAVREVGA
Ga0066667_1055034743300018433Grasslands SoilMPNNGLEQKNYAEIERLETLLQTLRESASTARETEAIREIGLEMALAVRE
Ga0066667_1078677113300018433Grasslands SoilMSDSPEQKNFAEIERLEKLLGELRSNPSTARETEA
Ga0190270_1170279513300018469SoilMASPEERNYAAIERLERLLVEMRKNQSTPRETEAIREIG
Ga0066669_1049921013300018482Grasslands SoilMTNPEEKNYAEIVRLEELLTELRANPSTARETEAIREIGLEIAIAVREVGAMLVNV
Ga0066669_1082819843300018482Grasslands SoilMPNSGPEQKNFAEIERLEGLLHTLRESHSTARETEAIREIGLEIALAMREVG
Ga0066669_1173590713300018482Grasslands SoilMENPERKNYAEIERLEALLRDLRSNRSTARETEAIREIGL
Ga0066669_1232276713300018482Grasslands SoilMSNSGPEQRNYAEIERLETLLQTLRENPSTARETEAIREIG
Ga0184642_146539623300019279Groundwater SedimentVANEISSNDPEQKNYAEIERLEQLLSELRKNRSTARETEAIREIGLEIAVAIR
Ga0184642_170012213300019279Groundwater SedimentVASEMSNNDPEQKNYAEIERLEQLLSELRENRSTARETEAIREIGLEMA
Ga0193747_101616463300019885SoilMSDNSPERRNFAEIERLEQLLQDLRENPSTARETE
Ga0193729_112232843300019887SoilMLPSDPGQRNYGEIERLERLLEDLRANPSTARETEAIREIGLEIALAVREVGAMLVSVGS
Ga0193693_103868213300019996SoilVRANGLMSSSSPEQRNYGEIERLENLLQDLRANPSTARETEAIR
Ga0222625_119574613300022195Groundwater SedimentMSNSGPERKNYAEIERLETLLQTLRENPSTARETEAIREIGLEIA
Ga0222622_1021259113300022756Groundwater SedimentMSNSGPERKNYAEIERLETLLQTLRENPSTARETEAIREIGLEI
Ga0222622_1073744243300022756Groundwater SedimentMSDNSPERRNFAEIERLEQLLQDLRENPSTARETEAI
Ga0247794_1030276713300024055SoilMGSPERKNYAEIERLEHLLAELRSGKSTPRQTEAIREIGLEIAIAIREVGAML
Ga0247672_103795713300024187SoilVASPEQQNYEQIERLQALLTELRASASTARETEAIREIGLEIAVAIREVGAMLV
Ga0207688_1018937413300025901Corn, Switchgrass And Miscanthus RhizosphereMSNSGPEQRNYAEIERLEALLQTLRENPSTARETEAIREIGLEIALA
Ga0207662_1035984313300025918Switchgrass RhizosphereMSSNSPEQRNYGEIERLENLLQDLRANPSTARETEAIR
Ga0207706_1047886913300025933Corn RhizosphereVASPEQRNYEEIERLEGLLTELRGNRSTARETEAIREIGLEIAIAVREV
Ga0207709_1068954613300025935Miscanthus RhizosphereVPSPEQHNYEQIERLQALLTELRASPSTARETEAIREIGIEIALAVR
Ga0207704_1020726043300025938Miscanthus RhizosphereVPSPEQHNYEQIERLQALLTELRASPSTARETEAIREIGIEIALAVREVGAM
Ga0207667_1089529713300025949Corn RhizosphereMSNSGPERKNYAEIERLEALLQTLRENPSTARETEAIREIGLEI
Ga0207712_1187389923300025961Switchgrass RhizosphereMNSPEQKNYAEIERLEALLAALRANAGTTRETEAIREIGFEIAVAIREV
Ga0209238_124364613300026301Grasslands SoilMPNNGLEQKNYAEIERLETLLQTLRESASTARETEAIREIGLEIALAV
Ga0209686_115854433300026315SoilMANNGPEQKNYAEIERLETLLQTLRENPSTARETEAIREIGLEMALAVREVGAMLI
Ga0209267_128764013300026331SoilMANNGPEQKNYAEIERLETLLQTLRENPSTARETEAIREIGLEMALAVREVGAMLINV
Ga0209161_1005204813300026548SoilMANNGPEQKNYAEIERLETLLQTLRENPSTARETEAIREIGLEMALA
Ga0209811_1038490423300027821Surface SoilMAPNNPEQKNYAEIERLERLLVQLRASASTARETEAIREIGLEIALAVREVGAML
Ga0247820_1113254013300028597SoilMASPEERNYAAIERLEQLLVEMRKYQSTPRETEAIREIGFEIAI
Ga0307301_1013156333300028719SoilVANEISSNDPEQKNYAEIERLEQLLSELRKNRSTARETEAIREIGLEI
Ga0307290_1033984313300028791SoilMSNSGPERKNYAEIERLETLLQTLRENPSTARETEAIREIGLEIALAVREVGAMLIN
Ga0307299_1040601033300028793SoilMSNSGPERKNYAEIERLETLLQTLRENPSTARETEAIREIG
Ga0307284_1008772343300028799SoilVANEISSNDPEQKNYAEIERLEQLLSELRKNRSTARETEAIREIGLEIAVAIREVGA
Ga0307305_1021444113300028807SoilLSSPEQKNYAEIERLEGLLGELRANAPTEQTTEAIREIGLE
Ga0307294_1038085933300028810SoilMSNSGPEQRNYAEIERLETLLQTLRENPSTARETEAI
Ga0307302_1041202313300028814SoilMSNSGPEQRNYAEIERLETLLQTLRENPSTARETEAIREIGLEIALAVREVGAMLINV
Ga0307302_1052865033300028814SoilMESAEQKNYQQIERLEQLLTELRSDPSTAREPAAIREIGLEIAIAVREVGAM
Ga0307312_1116659013300028828SoilMPNSGAEQKNYTEIERLEALLETLRENPSTARETE
Ga0308183_103342713300030988SoilMSDNSPERRNFAEIERLEQLLQDLRENPSTARETEAIREIGLEIALAVREVGAML
Ga0308185_102963313300031081SoilMSNSGPEQRNYTEIERLETLLQTLRENPSTARETEAIREIGLEIALAVREV
Ga0308184_105261613300031095SoilMSNSGPERKNYAEIERLETLLQTLRENPSTARETE
Ga0308187_1018315933300031114SoilMANEISSNDPEQKNYAEIERLDQLLSELRKNRSTARETE
Ga0307506_1007930933300031366SoilVASPEQQNFEQIERLQGLLVELRANRSTARETEAI
Ga0308194_1014455313300031421SoilVANEISSNDPEQKNYAEIERLEQLLSELRKNRSTARETEAIREI
Ga0310892_1001210693300031858SoilMSVNGPEQKNYAEIERLELLLSALRDSASTPREPEAI
Ga0307409_10172776513300031995RhizosphereMSNPEGKNYAEIERLEGLLRDLRADGGTMRETEAIREIGLEIAI
Ga0307472_10044474843300032205Hardwood Forest SoilMSSNSPEQRNYGEIERLENLLQDLRANPSTARETEAIREIGLEIALAVRE
Ga0307472_10094840043300032205Hardwood Forest SoilMPSRSPEQKNYTEIERLEKLLTELRGSPSTARETEAIREIGLEI
Ga0370548_053858_548_7243300034644SoilMPNSGPEQKNYAEIERLEALLETLRENPSTARETEAIREIGLEIALAVREVGAMLVNVG
Ga0370548_056013_579_7133300034644SoilMSGTSPEQKNFAEIDRLEKLLTELRSGRSTARETEAIREIGLEIA
Ga0370541_013177_704_8593300034680SoilMPNSGPEQKNYAEIERLEALLETLRENPSTARETEAIREIGLEIALAVREVG
Ga0370541_033084_1_1653300034680SoilMPNSGAEQKNYTEIERLEALLETLRENPSTARETEAIREIGLEIALAVREVGAML
Ga0370546_074063_2_1153300034681SoilMSNSGPERKNYAEIERLEALLETLRENPSTARETEAIR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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