NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F045813

Metagenome / Metatranscriptome Family F045813

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F045813
Family Type Metagenome / Metatranscriptome
Number of Sequences 152
Average Sequence Length 44 residues
Representative Sequence MQSALGLLVFVVYIAAIIAVAAGVTWLVVRLTPAKKPDATPKT
Number of Associated Samples 132
Number of Associated Scaffolds 152

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 77.55 %
% of genes near scaffold ends (potentially truncated) 23.03 %
% of genes from short scaffolds (< 2000 bps) 80.92 %
Associated GOLD sequencing projects 125
AlphaFold2 3D model prediction Yes
3D model pTM-score0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (57.895 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(9.868 % of family members)
Environment Ontology (ENVO) Unclassified
(25.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(48.026 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 42.25%    β-sheet: 0.00%    Coil/Unstructured: 57.75%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.54
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 152 Family Scaffolds
PF01262AlaDh_PNT_C 28.95
PF05222AlaDh_PNT_N 9.21
PF01676Metalloenzyme 6.58
PF08241Methyltransf_11 1.32
PF12697Abhydrolase_6 1.32
PF06831H2TH 1.32
PF01464SLT 1.32
PF07831PYNP_C 1.32
PF12847Methyltransf_18 0.66
PF05690ThiG 0.66
PF01264Chorismate_synt 0.66
PF00326Peptidase_S9 0.66
PF07687M20_dimer 0.66
PF01546Peptidase_M20 0.66

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 152 Family Scaffolds
COG0213Thymidine phosphorylaseNucleotide transport and metabolism [F] 1.32
COG0266Formamidopyrimidine-DNA glycosylaseReplication, recombination and repair [L] 1.32
COG0082Chorismate synthaseAmino acid transport and metabolism [E] 0.66
COG0214Pyridoxal 5'-phosphate synthase subunit PdxSCoenzyme transport and metabolism [H] 0.66
COG2022Thiazole synthase ThiGH, ThiG subunit (thiamin biosynthesis)Coenzyme transport and metabolism [H] 0.66
COG2070NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase familyGeneral function prediction only [R] 0.66

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms57.89 %
UnclassifiedrootN/A42.11 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2088090004|P1_DRAFT_NODE_61279_len_965_cov_6_874611All Organisms → cellular organisms → Bacteria1015Open in IMG/M
2088090008|P3_DRAFT_NODE_61154_len_1442_cov_11_288488All Organisms → cellular organisms → Bacteria1492Open in IMG/M
2124908039|B3_v_NODE_94100_len_6535_cov_14_441010All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae6585Open in IMG/M
2170459023|GZGNO2B01EJY9VNot Available518Open in IMG/M
2199352024|deeps__Contig_146177Not Available551Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_100598282All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria790Open in IMG/M
3300001534|A15PFW1_10680006All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1353Open in IMG/M
3300001535|A3PFW1_10207044All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1082Open in IMG/M
3300001686|C688J18823_10076366All Organisms → cellular organisms → Bacteria2324Open in IMG/M
3300002568|C688J35102_120586082All Organisms → cellular organisms → Bacteria1210Open in IMG/M
3300002568|C688J35102_120851915All Organisms → cellular organisms → Bacteria1822Open in IMG/M
3300005167|Ga0066672_10294606All Organisms → cellular organisms → Bacteria1053Open in IMG/M
3300005175|Ga0066673_10295335All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia944Open in IMG/M
3300005181|Ga0066678_10761767All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300005336|Ga0070680_100189458All Organisms → cellular organisms → Bacteria1733Open in IMG/M
3300005336|Ga0070680_101266091Not Available638Open in IMG/M
3300005336|Ga0070680_101322025All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria624Open in IMG/M
3300005434|Ga0070709_10322658All Organisms → cellular organisms → Bacteria1134Open in IMG/M
3300005434|Ga0070709_10416739All Organisms → cellular organisms → Bacteria1006Open in IMG/M
3300005439|Ga0070711_101543110All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia580Open in IMG/M
3300005445|Ga0070708_100905296All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria828Open in IMG/M
3300005458|Ga0070681_10600711Not Available1015Open in IMG/M
3300005458|Ga0070681_10851265All Organisms → cellular organisms → Bacteria830Open in IMG/M
3300005468|Ga0070707_100106009All Organisms → cellular organisms → Bacteria2726Open in IMG/M
3300005468|Ga0070707_100356370All Organisms → cellular organisms → Bacteria1421Open in IMG/M
3300005529|Ga0070741_10148256All Organisms → cellular organisms → Bacteria2363Open in IMG/M
3300005529|Ga0070741_10150346All Organisms → cellular organisms → Bacteria2342Open in IMG/M
3300005529|Ga0070741_10177226All Organisms → cellular organisms → Bacteria2103Open in IMG/M
3300005536|Ga0070697_100884385All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria792Open in IMG/M
3300005537|Ga0070730_10883139All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales561Open in IMG/M
3300005545|Ga0070695_100304688All Organisms → cellular organisms → Bacteria1179Open in IMG/M
3300005556|Ga0066707_10179653All Organisms → cellular organisms → Bacteria1356Open in IMG/M
3300005560|Ga0066670_10527129All Organisms → cellular organisms → Bacteria724Open in IMG/M
3300005563|Ga0068855_101896553All Organisms → cellular organisms → Bacteria604Open in IMG/M
3300005576|Ga0066708_10393382Not Available890Open in IMG/M
3300005713|Ga0066905_101820285Not Available562Open in IMG/M
3300005764|Ga0066903_100850071All Organisms → cellular organisms → Bacteria1642Open in IMG/M
3300005764|Ga0066903_103787463All Organisms → cellular organisms → Bacteria813Open in IMG/M
3300005892|Ga0075275_1014306All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia1095Open in IMG/M
3300005904|Ga0075280_10004149All Organisms → cellular organisms → Bacteria2129Open in IMG/M
3300006046|Ga0066652_100032504All Organisms → cellular organisms → Bacteria3755Open in IMG/M
3300006237|Ga0097621_101902380Not Available568Open in IMG/M
3300006638|Ga0075522_10015446All Organisms → cellular organisms → Bacteria4916Open in IMG/M
3300006638|Ga0075522_10130218All Organisms → cellular organisms → Bacteria1329Open in IMG/M
3300006755|Ga0079222_12522914Not Available516Open in IMG/M
3300006804|Ga0079221_10481696All Organisms → cellular organisms → Bacteria799Open in IMG/M
3300006806|Ga0079220_11438295All Organisms → cellular organisms → Bacteria587Open in IMG/M
3300006852|Ga0075433_11271524Not Available638Open in IMG/M
3300006950|Ga0075524_10171148All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium944Open in IMG/M
3300007821|Ga0104323_103102All Organisms → cellular organisms → Bacteria1046Open in IMG/M
3300009012|Ga0066710_100180315All Organisms → cellular organisms → Bacteria2983Open in IMG/M
3300009029|Ga0066793_10360170All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes837Open in IMG/M
3300009038|Ga0099829_10673829All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium860Open in IMG/M
3300009089|Ga0099828_11985380All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium509Open in IMG/M
3300009090|Ga0099827_10350138All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1256Open in IMG/M
3300009090|Ga0099827_10818177All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium806Open in IMG/M
3300009093|Ga0105240_12150715Not Available579Open in IMG/M
3300009137|Ga0066709_104416227Not Available513Open in IMG/M
3300009147|Ga0114129_13438413Not Available508Open in IMG/M
3300009148|Ga0105243_12429040Not Available563Open in IMG/M
3300010358|Ga0126370_11395503Not Available661Open in IMG/M
3300010366|Ga0126379_11502088All Organisms → cellular organisms → Bacteria779Open in IMG/M
3300010373|Ga0134128_12285665All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300010877|Ga0126356_10774839All Organisms → cellular organisms → Bacteria1397Open in IMG/M
3300010880|Ga0126350_10049114All Organisms → cellular organisms → Bacteria2002Open in IMG/M
3300012011|Ga0120152_1073571Not Available1026Open in IMG/M
3300012096|Ga0137389_10858790Not Available779Open in IMG/M
3300012189|Ga0137388_10349877Not Available1362Open in IMG/M
3300012202|Ga0137363_10594853Not Available934Open in IMG/M
3300012212|Ga0150985_117220337All Organisms → cellular organisms → Bacteria546Open in IMG/M
3300012351|Ga0137386_11308233Not Available502Open in IMG/M
3300012403|Ga0134049_1123885Not Available675Open in IMG/M
3300012469|Ga0150984_107426698Not Available661Open in IMG/M
3300012922|Ga0137394_11123185Not Available650Open in IMG/M
3300012925|Ga0137419_11877284Not Available514Open in IMG/M
3300012930|Ga0137407_11566471Not Available627Open in IMG/M
3300012931|Ga0153915_10162663All Organisms → cellular organisms → Bacteria2427Open in IMG/M
3300012931|Ga0153915_10966358All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium992Open in IMG/M
3300012955|Ga0164298_11241117Not Available567Open in IMG/M
3300012955|Ga0164298_11253977All Organisms → cellular organisms → Bacteria565Open in IMG/M
3300012960|Ga0164301_10296213Not Available1087Open in IMG/M
3300012961|Ga0164302_10831205All Organisms → cellular organisms → Bacteria701Open in IMG/M
3300012982|Ga0168317_1000105All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria63695Open in IMG/M
3300012987|Ga0164307_11518575All Organisms → cellular organisms → Bacteria566Open in IMG/M
3300013100|Ga0157373_11186110Not Available575Open in IMG/M
3300014031|Ga0120173_1052683Not Available587Open in IMG/M
3300014150|Ga0134081_10113813Not Available862Open in IMG/M
3300014154|Ga0134075_10338930Not Available658Open in IMG/M
3300014166|Ga0134079_10530009Not Available574Open in IMG/M
3300015242|Ga0137412_10888448Not Available647Open in IMG/M
3300015358|Ga0134089_10540259Not Available515Open in IMG/M
3300015371|Ga0132258_12554990All Organisms → cellular organisms → Bacteria1277Open in IMG/M
3300018431|Ga0066655_11059755Not Available564Open in IMG/M
3300018482|Ga0066669_11247213Not Available671Open in IMG/M
3300018482|Ga0066669_11467895Not Available619Open in IMG/M
3300019356|Ga0173481_10867791Not Available505Open in IMG/M
3300019873|Ga0193700_1042192All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales734Open in IMG/M
3300019890|Ga0193728_1001625All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria11540Open in IMG/M
3300019890|Ga0193728_1210549Not Available809Open in IMG/M
3300020062|Ga0193724_1059889All Organisms → cellular organisms → Bacteria801Open in IMG/M
3300020069|Ga0197907_10087499Not Available842Open in IMG/M
3300020069|Ga0197907_10907103Not Available514Open in IMG/M
3300020070|Ga0206356_10413032Not Available625Open in IMG/M
3300020070|Ga0206356_10896270All Organisms → cellular organisms → Bacteria1267Open in IMG/M
3300020081|Ga0206354_10511082Not Available587Open in IMG/M
3300021080|Ga0210382_10067094All Organisms → cellular organisms → Bacteria1445Open in IMG/M
3300021363|Ga0193699_10008690All Organisms → cellular organisms → Bacteria3646Open in IMG/M
3300021363|Ga0193699_10067947All Organisms → cellular organisms → Bacteria1403Open in IMG/M
3300021479|Ga0210410_10229133All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1665Open in IMG/M
3300024288|Ga0179589_10382807Not Available643Open in IMG/M
3300025750|Ga0209747_1112252All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria908Open in IMG/M
3300025764|Ga0209539_1327432Not Available515Open in IMG/M
3300025862|Ga0209483_1006882All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia6800Open in IMG/M
3300025891|Ga0209585_10060645Not Available1403Open in IMG/M
3300025910|Ga0207684_11718753Not Available505Open in IMG/M
3300025912|Ga0207707_10476468All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD00821066Open in IMG/M
3300025917|Ga0207660_10400743All Organisms → cellular organisms → Bacteria1105Open in IMG/M
3300025917|Ga0207660_11110476Not Available644Open in IMG/M
3300025921|Ga0207652_10210092Not Available1752Open in IMG/M
3300025922|Ga0207646_10420592Not Available1206Open in IMG/M
3300025939|Ga0207665_10433874All Organisms → cellular organisms → Bacteria1006Open in IMG/M
3300025945|Ga0207679_11594969Not Available598Open in IMG/M
3300025949|Ga0207667_11535338Not Available636Open in IMG/M
3300025981|Ga0207640_12047484Not Available519Open in IMG/M
3300026313|Ga0209761_1090612All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1555Open in IMG/M
3300026335|Ga0209804_1034449All Organisms → cellular organisms → Bacteria2549Open in IMG/M
3300027725|Ga0209178_1402101Not Available520Open in IMG/M
3300027748|Ga0209689_1162051Not Available1049Open in IMG/M
3300027773|Ga0209810_1079741All Organisms → cellular organisms → Bacteria1547Open in IMG/M
3300027815|Ga0209726_10176017Not Available1157Open in IMG/M
3300027862|Ga0209701_10218445All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1129Open in IMG/M
3300028577|Ga0265318_10072698All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1274Open in IMG/M
3300028654|Ga0265322_10016784Not Available2111Open in IMG/M
3300028802|Ga0307503_10024086All Organisms → cellular organisms → Bacteria2049Open in IMG/M
3300028828|Ga0307312_10946263All Organisms → cellular organisms → Bacteria571Open in IMG/M
(restricted) 3300031150|Ga0255311_1062571Not Available788Open in IMG/M
3300031231|Ga0170824_104123634All Organisms → cellular organisms → Bacteria962Open in IMG/M
3300031240|Ga0265320_10043003All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2236Open in IMG/M
3300031341|Ga0307418_1012127All Organisms → cellular organisms → Bacteria2546Open in IMG/M
3300031938|Ga0308175_100647201Not Available1142Open in IMG/M
3300031939|Ga0308174_10382476Not Available1130Open in IMG/M
3300032163|Ga0315281_10000496All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria54642Open in IMG/M
3300033233|Ga0334722_10090195All Organisms → cellular organisms → Bacteria2340Open in IMG/M
3300033826|Ga0334847_017691All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria765Open in IMG/M
3300034268|Ga0372943_0079182All Organisms → cellular organisms → Bacteria1894Open in IMG/M
3300034268|Ga0372943_0120116All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1568Open in IMG/M
3300034384|Ga0372946_0017683All Organisms → cellular organisms → Bacteria3106Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil9.87%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil9.21%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere7.24%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.58%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere5.92%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil4.61%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.95%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil3.29%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil3.29%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere3.29%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.63%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost2.63%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.63%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil2.63%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.63%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Soil1.97%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.97%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere1.97%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment1.32%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands1.32%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.32%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.32%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil1.32%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.32%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil1.32%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.66%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater0.66%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh0.66%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.66%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.66%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.66%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil0.66%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.66%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.66%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.66%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.66%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.66%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.66%
Weathered Mine TailingsEnvironmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings0.66%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.66%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.66%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.66%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.66%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.66%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.66%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.66%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.66%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2088090004Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1EnvironmentalOpen in IMG/M
2088090008Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3EnvironmentalOpen in IMG/M
2124908039Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Bog Site B4EnvironmentalOpen in IMG/M
2170459023Grass soil microbial communities from Rothamsted Park, UK - FA3 (control condition)EnvironmentalOpen in IMG/M
2199352024Bare-fallow DEEP SOILEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001534Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-PF-7A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300001535Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300001686Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300004063Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLB_D2EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005892Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_305EnvironmentalOpen in IMG/M
3300005904Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_404EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006638Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-AEnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006950Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-oneEnvironmentalOpen in IMG/M
3300007821Permafrost core soil microbial communities from Svalbard, Norway - sample 2-10-2 SoapdenovoEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009029Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010877Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010880Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300012011Permafrost microbial communities from Nunavut, Canada - A30_65cm_6MEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012403Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012982Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfieldEnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300014031Permafrost microbial communities from Nunavut, Canada - A35_80cm_0.25MEnvironmentalOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300019873Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1EnvironmentalOpen in IMG/M
3300019890Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1EnvironmentalOpen in IMG/M
3300020062Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1EnvironmentalOpen in IMG/M
3300020069Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020070Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020081Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300021080Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redoEnvironmentalOpen in IMG/M
3300021363Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2EnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300025750Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-311 (SPAdes)EnvironmentalOpen in IMG/M
3300025764Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-312 (SPAdes)EnvironmentalOpen in IMG/M
3300025862Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)EnvironmentalOpen in IMG/M
3300025891Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one (SPAdes)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025949Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026196Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D2_MG (SPAdes)EnvironmentalOpen in IMG/M
3300026313Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)EnvironmentalOpen in IMG/M
3300027725Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027773Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027815Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028577Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaGHost-AssociatedOpen in IMG/M
3300028654Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaGHost-AssociatedOpen in IMG/M
3300028802Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_SEnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300031150 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031240Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaGHost-AssociatedOpen in IMG/M
3300031341Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-20EnvironmentalOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300031939Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2EnvironmentalOpen in IMG/M
3300032163Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0EnvironmentalOpen in IMG/M
3300033233Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottomEnvironmentalOpen in IMG/M
3300033826Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 1-5EnvironmentalOpen in IMG/M
3300034268Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2EnvironmentalOpen in IMG/M
3300034384Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
P1_DRAFT_008955002088090004SoilMQSALGLLGFVVYIAVIVAVAAGVTWLVVRLTPAKKPDTTPKT
P3_DRAFT_016224602088090008SoilMQSALGLIGFVVYIAVIVAVAAGVTWLVVRLTPAKKPDTTPKT
B3_v_010459202124908039SoilMQSALGLVVFVVYILAIVSFAAGITWVVVRLTPAKKPDTAAKT
FA3_113325102170459023Grass SoilMANVIGLLLFVVYMAAIIGLAAGVTMLVVRLSPAKKPKPESS
deeps_026771702199352024SoilMQNVLGLIAFVGYIAAVIALAAGVTWLVVRLTPAKKKPETPTAS
INPhiseqgaiiFebDRAFT_10059828223300000364SoilMLNVLGLLLFVVYILAIVSIAAGITWAVVRLTPAKKPDTTPKTS*
A15PFW1_1068000623300001534PermafrostMQSALGLLGFVVYIAVIVAVAAGVTWLVVRVTPAKKPDTTPKT*
A3PFW1_1020704423300001535PermafrostMQSALGLIGFVVYIAVIVAAAAGVTWLVVRLTPAKKPDATPKT*
C688J18823_1007636633300001686SoilMADVLGLILFAVYIVAIISVAASVTWLVVRITPTKKPAPPAPSETA*
C688J35102_12058608223300002568SoilMADVLGLILFVVYIAAIISAAAGVTWLVVRITPTKKPAAPAPGETA*
C688J35102_12085191523300002568SoilMEDVLGLILFAVYIVAIISAAAGVTWLVVRITPTKKPAPPAPGETA*
Ga0055483_1003179023300004063Natural And Restored WetlandsMSNVLGLLAFVLYILIVVAAAAGVTMLVVKFSPAKKKPDAAPKS*
Ga0062590_10012782723300004157SoilMETFLGLLGLVVYIVAVIALAAGMTWLVVRLTPTSKPKPAPSEPPAS*
Ga0066672_1029460623300005167SoilMQNVLGLIAFVGYIAAVIALAAGVTWLVVRLTPAKKKPDAPSEA*
Ga0066673_1029533523300005175SoilMQNVLGLVAFVAYIAAVIALAAGVTWLVVRLTPAKKKPDTPSEA*
Ga0066678_1076176723300005181SoilMANVIGLLLFVVYIAAIISLAAGVTWLVVRLTPAKKPKPPKPAETV*
Ga0066676_1095629513300005186SoilVANVLGLIGFVLYIVAIVGAAAGVTWLVVRLSPAKKPQPPAA*
Ga0066388_10149256423300005332Tropical Forest SoilMADVIGLLLFVVYIVAIIAAAAGITLLVVRFSPTKKPQPKPDA*
Ga0070680_10018945823300005336Corn RhizosphereMKDVLGLLAFVVYIAVIIGVAAGVTWLVVRLSPAKKPKTDAGTN*
Ga0070680_10126609123300005336Corn RhizosphereMSSAIGLLLFVVYILAIVSVAAGVTWVVVRLTPAKKPKPAANPET*
Ga0070680_10132202523300005336Corn RhizosphereMDNVLGLIAFVGYIAAVIALAAGVTWLVVRLTPAKKKPDTPSEA*
Ga0070709_1032265823300005434Corn, Switchgrass And Miscanthus RhizosphereMSSAIGLILFVVYIVAIVSVAASVTWLVVRLTPAKKPKPAADSKS*
Ga0070709_1041673923300005434Corn, Switchgrass And Miscanthus RhizosphereMQNVLGLIAFVGYIAAVIALAAGVTWLVVRLTPAKKKPETPTEA*
Ga0070711_10154311023300005439Corn, Switchgrass And Miscanthus RhizosphereMEDVLGLILFAVYIVAIISVAAAVTWAVVRITPTKKPAPPAPGETA*
Ga0070708_10090529623300005445Corn, Switchgrass And Miscanthus RhizosphereMQSALGLLGFVVYIAAIIAAAAGVTWIVVRLSPAKKPDTTPPG*
Ga0070681_1060071113300005458Corn RhizosphereYSRFGMKDVLGLLAFVVYIAVIIGVAAGVTWLVVRLSPAKKPKTDAGTN*
Ga0070681_1085126523300005458Corn RhizosphereMKDVLGLLAFVVYIAAIIGVAAGVTWLVVRLSPAKKPKTDAGTN*
Ga0070707_10010600923300005468Corn, Switchgrass And Miscanthus RhizosphereMQTAFGLIGFVVYCVAIVVAAAAVTWVVVRLSPAKKPDESKPA*
Ga0070707_10035637023300005468Corn, Switchgrass And Miscanthus RhizosphereMQSALGLLGFVVYIAAIIAAAAGVTWVVVRLSPAKKPDTTPPG*
Ga0070741_1014825633300005529Surface SoilMANVLGVLAFVLYIAVIISVAAGVTWLVVRLTPTKKPKPPAPET*
Ga0070741_1015034623300005529Surface SoilMKDVLGLLAFLLYIAVIVGIAAGVTALVVKLSPAKKPKPDANT*
Ga0070741_1017722633300005529Surface SoilMTTVLGLLAFVAYILAVVGVAAGVTWLVVRLTPKKNADAAPKS*
Ga0070697_10088438523300005536Corn, Switchgrass And Miscanthus RhizosphereMQTAFGLIGFVVYCVAIVVAAAAVTWVVVRLSPAKKPDETKPA*
Ga0070730_1088313923300005537Surface SoilMQSALGLIEFVVFVAAIISLAAGITWLVVRLSPKKKPDAAPKT*
Ga0070695_10030468833300005545Corn, Switchgrass And Miscanthus RhizosphereASGYSRFGMDNVLGLIAFVGYIAAVIALAAGVTWLVVRLTPAKKKPDTPSEA*
Ga0066707_1017965323300005556SoilMANVIGLLLFVVYIAAIISLAAGVTWLVVRLTPAKKPKPPKAAETV*
Ga0066670_1052712923300005560SoilMQNVLGLVAFVAYIAAVIALAEGVTWLVVRLTPAKKKPDTPSEA*
Ga0068855_10189655323300005563Corn RhizosphereMETVLGLLAFVVYIAVVIAFAAGVTWLVVRLTPTKKPKAAEAEPSA*
Ga0066708_1039338213300005576SoilIAFVGYIAAVIALAAGVTWLVVRLTPAKKKPDAPSEA*
Ga0066905_10182028513300005713Tropical Forest SoilMETFLGLVFFVVYIVAIIGAAAGVTWLVVRLSPAKKPKDDPATTS*
Ga0066903_10085007123300005764Tropical Forest SoilMADVIGLILFVVYIVAIIAAAAGVTLLVVRFSPKKKPEPKPEA*
Ga0066903_10378746323300005764Tropical Forest SoilMANVLGLLLFGVYIVAIIATAAGVTWLVVRLTPTRKPKPETPIET*
Ga0075275_101430623300005892Rice Paddy SoilMTTALGLLAFVLYILVIVAAAAGVTWLVVRFTPSKKPDATKT*
Ga0075280_1000414943300005904Rice Paddy SoilALGLLAFVLYITAVVGVAAGVTWLVVRLSPPKRPDATKG*
Ga0066652_10003250433300006046SoilMEDVIGLILFAVYIVCVISVAAGVTWLVVRLTPTKTPKPQPTADS*
Ga0097621_10190238023300006237Miscanthus RhizosphereMEDVLGLILFAVYIVAIISVAAAVTWGVVRIPPTKKPAPPAPGDTA*
Ga0075522_1001544623300006638Arctic Peat SoilMQSALGLIAFVVYILAIVSLAAGVTWLVVRLTPAKKPKTATTKP*
Ga0075522_1013021823300006638Arctic Peat SoilMQSALGLVVFVVYILAIVSFAAGITWVVVRLTPAKKPDTAAKT*
Ga0079222_1252291413300006755Agricultural SoilPGYSRFGMETALGLILFVVYIFAVISVAAGVTWLVVRLTPSKAKPKPQTSAES*
Ga0079221_1048169623300006804Agricultural SoilMETALGLILFVVYIFAVISVAAGVTWLVVRLTPSKAKPKPQTSAES*
Ga0079220_1143829513300006806Agricultural SoilMADVLGLILFVVYIAAIISAAAGVTWLVVRITPTKKPAAPTPTETT*
Ga0075433_1127152423300006852Populus RhizosphereGLILFVVYIVAVIGVAAGVTWVVVRVTPPSKPKTQASPES*
Ga0075524_1017114823300006950Arctic Peat SoilMQSALGLLGFVVYIAVIVAVAAGVTWLVVRLTPAKKPDAPPKA*
Ga0104323_10310223300007821SoilMQSALGLLGFVVYISVIVAVAAGVTWLVVRLTPAKKPDATPKT*
Ga0066710_10018031523300009012Grasslands SoilMANVIGLLLFVVYIAAIISLAAGVTWLVVRLTPAKKPKPPKPAETV
Ga0066793_1036017023300009029Prmafrost SoilMQSALGLIGFVVYIAVIVAVAAGVTWLVVRLTPAKKPDATPKT*
Ga0099829_1067382913300009038Vadose Zone SoilMQTALGLIGFVIYILVIVAAAAGVTWVVVRLSPAKKPDESKPAS*
Ga0099828_1198538023300009089Vadose Zone SoilMATALGLIAFVVFIAAVITVAAAVTWLVVRLTPAKKKPESAPET*
Ga0099827_1035013823300009090Vadose Zone SoilMNNVLGLVVFVIYIAAVISAAAGVTWVVVRLSPAKKPSDTPST*
Ga0099827_1081817723300009090Vadose Zone SoilMATALGLIAFVVFIAAVITVAAAVTWLVVRLTPAKKKPESAPEN*
Ga0105240_1215071523300009093Corn RhizosphereMDNVLGLLAFLVYIAVVISVAAGVTWLVVRLTPAKKPKATPET*
Ga0066709_10441622723300009137Grasslands SoilVLGILGFVVYIACIVSVAAGVTWLVVRISPAKETKPEPQS*
Ga0114129_1343841323300009147Populus RhizosphereMETALGLILFVVYIVAVIGVAAGVTWVVVRVTPPSKPKTQASPES*
Ga0105243_1242904023300009148Miscanthus RhizosphereMETFLGLLGLVVYIVAVIALAAGMTWLVVRLTPTSKPKP
Ga0126370_1139550313300010358Tropical Forest SoilAMENVIGLILFGVYIVAIISLAAGVTWLVVRLTPSKKPKPSPTT*
Ga0126379_1150208823300010366Tropical Forest SoilMEVMANALGLLEFAFYIVLVISLAAAVTWLVVRLSPPPKPKTPES*
Ga0134128_1228566523300010373Terrestrial SoilVLDALGLLGMLVYIAVVIAFAAGVTWLVVRLTPTKKPKAAEAEPSA*
Ga0126356_1077483923300010877Boreal Forest SoilMQSALGLIEFVLFITAIVSLAAGITWLVVRLSPKKKPDAPTA*
Ga0126350_1004911433300010880Boreal Forest SoilMQSALGLIEFVVFITAIVSVAAGITWLVVRLSPKKKPDAPTA*
Ga0120152_107357123300012011PermafrostMQSALGLIGFVVYIAVIVAVAAGVTWLVVRVTPAKKPDTTPKT*
Ga0137389_1085879023300012096Vadose Zone SoilMATALGLIAFVVFIAAVITVAAAVTWLVVRLTPAKK
Ga0137388_1034987713300012189Vadose Zone SoilMATALGLIAFVVFIAAVVTVAAAVTWLVVRLTPAKKKPESAPET*
Ga0137363_1059485323300012202Vadose Zone SoilMQTALGLIGFVVYILAIVAAAAGITWVVVRLSPAKKPDESKPA*
Ga0150985_11722033723300012212Avena Fatua RhizosphereMENVLGLLLFVVYIVGIISAAAGITWLVVRISPAKKPKDAPAP*
Ga0137386_1130823323300012351Vadose Zone SoilMQSALGLLGFVVYIAAIIAAAAGVTWIVVRLSPAKKPDATPPG*
Ga0134049_112388513300012403Grasslands SoilIGLLLFVIYIAAIISLAAGVTWLLVRLTPAKKPKPPKPAETV*
Ga0150984_10742669823300012469Avena Fatua RhizosphereMEDVLGLILFAVYIAAIISAAAGVTWLVVRITPTKKPAPPAPSESA*
Ga0137394_1112318523300012922Vadose Zone SoilMKDAIGLLLFVAYIAAIVGLAAGITWLVVRLSPAKKPDDAPTT*
Ga0137419_1187728423300012925Vadose Zone SoilWPHGYSRFGMANVTGLLLFLVYIAAVIAFAAGVTWLVVRLTPTKKPKAAEPTPS*
Ga0137407_1156647113300012930Vadose Zone SoilMANVIGLLLFLVYIAAVIAFAAGVTWLVVRLTPTKKPKAAEPTPS*
Ga0153915_1016266323300012931Freshwater WetlandsMSTALGLLAFVVYIAVVISVAAGVTWLVVRLTPAKKPKTDAPA*
Ga0153915_1096635813300012931Freshwater WetlandsMQSALGLLGFVVYIAAIVGAAAGVTWLVVRLTPAKKPDATPKT*
Ga0164298_1124111713300012955SoilMSSAIGLILFVVYIVAIVSVAAGVTWLVVRLTPAKKPKPAADSKS*
Ga0164298_1125397723300012955SoilMSTVLGLLAFVVYIAVVIAFAAGVTWLVVRVTPTKKPKAAEAEPSA*
Ga0164301_1029621313300012960SoilYSRFGMQNVLGLLAFVGYIAAVIALAAGVTWLVVRLTPAKKKPETPTEA*
Ga0164302_1083120523300012961SoilMEDVLGLILFAVYIVAIISVTAAVIWGVVRITPTKKPAPPAPGETA*
Ga0168317_1000105363300012982Weathered Mine TailingsMQSALGLIGFVVYIAVVIAAAAGVTWVVVRLSPAKKPDTTPPA*
Ga0164307_1151857523300012987SoilMSTVLGLLAFVVYIAVVIAFAAGVTWLVVRGTPTKKPKAAEAEPSA*
Ga0157373_1118611023300013100Corn RhizosphereGLIAFVGYIAAVIALAAGVTWRVVRLTPARKKPDTPSEA*
Ga0120173_105268323300014031PermafrostMQSALGLIGFVVYIAVIVAVAAGVTWLVVRGTPAKKPDTTPKT*
Ga0134081_1011381313300014150Grasslands SoilGYCRFGMANVIGLLLFVIYIAAIISLAAGVTWLFVRLTPAKKPKPPKPAETV*
Ga0134075_1033893023300014154Grasslands SoilMADVLGLILFGVYIVAIISLAAGVTWLVVRLTPTRKPKPEAPA
Ga0134079_1053000923300014166Grasslands SoilMQNVLGLIAFVGYIAAVIALAAGVTGLVVRLTPAKKKPDTPSEA*
Ga0137412_1088844823300015242Vadose Zone SoilANVTGLLLFLVYIAAVIAFAAGVTWLVVRLTPTKKPKAAEPTPS*
Ga0134089_1054025923300015358Grasslands SoilMANVIGLLLFVVYIAAIISLAAGVTWLVVRLTPAKKPKPPKPAE
Ga0132258_1255499023300015371Arabidopsis RhizosphereMEDVLGLVLFVVYIAAIISVAAGITWLVVRITPTKKEKPVTPTPEG*
Ga0066655_1105975523300018431Grasslands SoilMKDVIGLLGFLVYIAVIVGMAAGVTMLVVRLSPAKKPKP
Ga0066669_1124721313300018482Grasslands SoilSRAASGSSRCGMQTVLGLVAFVAYIAAVIALAAGVTWLVVRLTPAKKKPDTPSEA
Ga0066669_1146789523300018482Grasslands SoilMQNVLGLIAFVGYIAAVIALAAGVTWLVVRLTPAKKKPDAPSEA
Ga0173481_1086779123300019356SoilMETFLGLLGLVVYIVAVIALAAGMTWLVVRLTPTSKPKPAPSEPPAS
Ga0193700_104219223300019873SoilMADVIGLLLFVVYIAAVIALAAGVTWLVVRLTPKKKPKAAEPAAS
Ga0193728_1001625103300019890SoilMQSALGLLGFVVYIAVIITVAAGVTWAVVKISPAKKPSDTPPAS
Ga0193728_121054913300019890SoilRIGFVAYIAAVIALAAAVTWLVVRLTPAKKPKTDTASEA
Ga0193724_105988923300020062SoilMRVFYGAMLNVLGLLLFVVYIVAIVSLAAGVTWLVVRLTPPKKPASPPTT
Ga0197907_1008749923300020069Corn, Switchgrass And Miscanthus RhizosphereMDNVLGLLAFLVYIAVVISVAAGVTWLVVRLTPAKKPKATPET
Ga0197907_1090710313300020069Corn, Switchgrass And Miscanthus RhizosphereMKDVLGLLAFVVYIAAIIGVAAGVTWLVVRLSPAKKPKTDAGTN
Ga0206356_1041303223300020070Corn, Switchgrass And Miscanthus RhizosphereMKDVLGLLAFVVYIAVIIGVAAGVTWLVVRLSPAKKPKTDAGTN
Ga0206356_1089627023300020070Corn, Switchgrass And Miscanthus RhizosphereMQNVLGLIAFVGYIAAVIALAAGVTWLVVRLTPAKKKPETPTEA
Ga0206354_1051108213300020081Corn, Switchgrass And Miscanthus RhizosphereNVLGLIAFVGYIAAVIALAAGVTWLVVRLTPAKKKPETPTEA
Ga0210382_1006709413300021080Groundwater SedimentVAYIAAVIALAAAVTWLVVRLTPAKKPKTDTASEA
Ga0193699_1000869053300021363SoilMANVIGLLLFLVYIAAVIAFAAGVTWLVVRLTPTKKPKASEPTPS
Ga0193699_1006794723300021363SoilMQSAIGLVFFVVYILAIVSLAAGITWLVVRLTPAKKPDTAPKT
Ga0210410_1022913323300021479SoilMQTALGLIGFVVFILVIVAAAAGITWVVVRLSPAKTPDESKPA
Ga0179589_1038280723300024288Vadose Zone SoilMRLFYGAMLNVLGLLLFVVYIVAIVSLAAGITWAVVRLTPAKKPDTTPKTS
Ga0209747_111225223300025750Arctic Peat SoilMQSALGLAVFVVYILAIVSFAAGITWVVVRLTPAKKPDTAAKT
Ga0209539_132743223300025764Arctic Peat SoilKTAMQSALGLIGFVVYIAVIVAVAAGVTWLVVRLTPAKKPDTAAKT
Ga0209483_100688263300025862Arctic Peat SoilMQSALGLIAFVVYILAIVSLAAGVTWLVVRLTPAKKPKTATTKP
Ga0209585_1006064523300025891Arctic Peat SoilMQSALGLLGFVVYIAVIVAVAAGVTWLVVRLTPAKKPDAPPKA
Ga0207684_1171875323300025910Corn, Switchgrass And Miscanthus RhizosphereNVLGLIAFVGYIAAVIALAAGVTWLVVRLTPAKKKPETPTEAQ
Ga0207707_1047646813300025912Corn RhizosphereIAFVGYIAAVIALAAGVTWLVVRLTPAKKKPDTPSEA
Ga0207660_1040074323300025917Corn RhizosphereMDNVLGLIAFVGYIAAVIALAAGVTWLVVRLTPAKKKPDTPSEA
Ga0207660_1111047613300025917Corn RhizosphereMSSAIGLLLFVVYILAIVSVAAGVTWVVVRLTPAKKPKPAANPET
Ga0207652_1021009213300025921Corn RhizosphereMDNVLGLLLFLVYIALVISVAAAVTWLVVRLTPAKKPKPPAP
Ga0207646_1042059223300025922Corn, Switchgrass And Miscanthus RhizosphereMQTAFGLIGFVVYCVAIVVAAAAVTWVVVRLSPAKKPDESKPA
Ga0207665_1043387423300025939Corn, Switchgrass And Miscanthus RhizosphereMAAGLIAFVGYIAAVIALAAGVTWLVVRLTPAKKKPETPTEA
Ga0207679_1159496923300025945Corn RhizosphereVLGLIAFVGYIAAVIALAAGVTWLVVRLTPAKKKPETPTEA
Ga0207667_1153533823300025949Corn RhizosphereMETVLGLLAFVVYIAVVIAFAAGVTWLVVRLTPTKKPKAAEAEPSA
Ga0207640_1204748423300025981Corn RhizosphereMETVLGLLAFVVYIAVVIAFAAGVTWLVVRLTPTKKPKAAEAE
Ga0209919_107026313300026196SoilMSNVLGLLAFVLYILIVVAAAAGVTMLVVKFSPAKKKPDAAPKS
Ga0209761_109061223300026313Grasslands SoilMATALGLIAFVVFIAAVITVAAAVTWLVVRLTPAKKKPESAPEN
Ga0209804_103444933300026335SoilMQNVLGLVAFVAYIAAVIALAAGVTWLVVRLTPAKKKPDTPSEA
Ga0209178_140210113300027725Agricultural SoilMETALGLILFVVYIFAVISVAAGVTWLVVRLTPSKAKPK
Ga0209689_116205113300027748SoilMQSALGLLGFVVYIAAIIAAAAGVTWIVVRLSPAKKPDTT
Ga0209810_107974123300027773Surface SoilMTTVLGLLAFVAYILAVVGVAAGVTWLVVRLTPKKNADAAPKS
Ga0209726_1017601723300027815GroundwaterMQSALGLLVFVVYIAAIIAVAAGVTWLVVRLTPAKKPDATPKT
Ga0209701_1021844523300027862Vadose Zone SoilMQSALGLLGFVVYIAAIIAAAAGVTWVVVRLSPAKKPDTTPPG
Ga0265318_1007269823300028577RhizosphereVHTALGLIGFVVYIAAIVGAAAGVTWLVVRLSPAKKPKPDATPPS
Ga0265322_1001678433300028654RhizosphereMQSDALGLVLFVVYILAIVSFAAGITWVVVRLTPAKKPDTAAKT
Ga0307503_1002408633300028802SoilMRLFYGAMLNVLGLLLFVVYIVAVVALAASVTWLVVRLTPPKKPAAPPTT
Ga0307312_1094626323300028828SoilMQSALGILGFLVYIAVIVAAAAGVTWLVVRLSPAKKPDAAPKA
(restricted) Ga0255311_106257113300031150Sandy SoilMQNALGIVEFVVFIAAIVSLAAGITWLVVRLSPTKKPTAPPAS
Ga0170824_10412363423300031231Forest SoilMQSALGLIEFVVFVAAIISLAAGITWLVVRLSPKKKPDAPTA
Ga0265320_1004300333300031240RhizosphereTAMQSDALGLVLFVVYILAIVSFAAGITWVVVRLTPAKKPDTAAKT
Ga0307418_101212723300031341Salt MarshMTTALGLLAFIAYIAVVIAAAAGVTWLVVRLSPKKRPDATPKS
Ga0308175_10064720123300031938SoilRFGMDNVLGLLAFLVYIAVVISVAAGVTWLVVRLTPAKKPKATPET
Ga0308174_1038247613300031939SoilMDNVLGLIAFVGYIAAVIALAAGVTWLVVRLTPAKKKPDTP
Ga0315281_10000496393300032163SedimentMQSALGLLGFIVYIAVIVAVAAGVTWVVVRLTPAKKPDTTPKS
Ga0334722_1009019533300033233SedimentMSNVLGLLVFVVYIVLVISVAAGVTWLVVRLTPAKKPKPETTVET
Ga0334847_017691_148_2793300033826SoilMQSALGLVVFVVYILAIVSFAAGITWLVVRLTPAKKPDTSPKT
Ga0372943_0079182_1770_18923300034268SoilGLLLFIVYIAAIVGVAAGVTWLVVRVTPQKKPKPQAPADV
Ga0372943_0120116_801_9353300034268SoilMQSALGLLGFLVYITVIVAVAAGVTWLVVKLVPPKKTDPAPPAS
Ga0372946_0017683_412_5493300034384SoilMQTALGLILFVVFIACVIGLAAGLTWLVVRLTPTKKPDSAESPGS

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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