Metagenome Family F045241

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F045241
Family Type	Metagenome
Number of Sequences	153
Average Sequence Length	47 residues
Representative Sequence	MDNVSVFFLAEGEQPADEVMARLTTFIRAAKQTLDFAIYDMRF
Number of Associated Samples	126
Number of Associated Scaffolds	153

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	39.87 %
% of genes near scaffold ends (potentially truncated)	96.73 %
% of genes from short scaffolds (< 2000 bps)	95.42 %
Associated GOLD sequencing projects	124
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.732 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (25.490 % of family members)
Environment Ontology (ENVO)	Unclassified (31.373 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.556 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.30% β-sheet: 0.00% Coil/Unstructured: 50.70%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 153 Family Scaffolds
PF00282	Pyridoxal_deC	15.03
PF01757	Acyl_transf_3	4.58
PF13177	DNA_pol3_delta2	3.92
PF07617	DUF1579	3.27
PF00561	Abhydrolase_1	3.27
PF13091	PLDc_2	2.61
PF01471	PG_binding_1	1.96
PF02129	Peptidase_S15	1.96
PF12681	Glyoxalase_2	1.96
PF04365	BrnT_toxin	1.31
PF00903	Glyoxalase	1.31
PF15919	HicB_lk_antitox	1.31
PF11127	DUF2892	1.31
PF07087	DUF1353	1.31
PF05960	DUF885	1.31
PF00106	adh_short	0.65
PF13730	HTH_36	0.65
PF03703	bPH_2	0.65
PF00534	Glycos_transf_1	0.65
PF03167	UDG	0.65
PF13602	ADH_zinc_N_2	0.65
PF07885	Ion_trans_2	0.65
PF16884	ADH_N_2	0.65
PF00271	Helicase_C	0.65
PF04191	PEMT	0.65
PF07731	Cu-oxidase_2	0.65
PF02518	HATPase_c	0.65
PF09339	HTH_IclR	0.65
PF01699	Na_Ca_ex	0.65
PF00881	Nitroreductase	0.65
PF12697	Abhydrolase_6	0.65
PF10009	DUF2252	0.65

COG ID	Name	Functional Category	% Frequency in 153 Family Scaffolds
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	15.03
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	1.31
COG4805	Uncharacterized conserved protein, DUF885 family	Function unknown [S]	1.31
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.65
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.65
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.65
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.65
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.65
COG3402	Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain	Function unknown [S]	0.65
COG3428	Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain	Function unknown [S]	0.65
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.65

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.73 %
Unclassified	root	N/A	3.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.73 %
Unclassified	root	N/A	3.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.73 %
Unclassified	root	N/A	3.27 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	52.29 %
Unclassified	root	N/A	3.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.31 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.31 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.65 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	52.29 %
Unclassified	root	N/A	3.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.31 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.65 %
Holophagae	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae	0.65 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	22.22 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	11.76 %
Unclassified	root	N/A	3.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.31 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.65 %
Holophagales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales	0.65 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	22.22 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	11.76 %
Unclassified	root	N/A	3.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.31 %
Holophagaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae	0.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.65 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	22.22 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	3.27 %
Unclassified	root	N/A	3.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.31 %
Geothrix	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae → Geothrix	0.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.65 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	22.22 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	3.27 %
Unclassified	root	N/A	3.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.31 %
Geothrix	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae → Geothrix	0.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.65 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	22.22 %
Unclassified	root	N/A	3.27 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2.61 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.31 %
Geothrix	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae → Geothrix	0.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.65 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.65 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459007\|GJ61VE201AL9GK	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	522	Open in IMG/M
2170459007\|GJ61VE201DOYJL	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	507	Open in IMG/M
2170459011\|GI3SL7401ASFPN	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	509	Open in IMG/M
3300000878\|AL9A1W_1246832	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300000955\|JGI1027J12803_106104593	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	511	Open in IMG/M
3300000955\|JGI1027J12803_107216784	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300000956\|JGI10216J12902_105555510	All Organisms → cellular organisms → Bacteria	1428	Open in IMG/M
3300000956\|JGI10216J12902_107753516	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	541	Open in IMG/M
3300002899\|JGIcombinedJ43975_10016496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1183	Open in IMG/M
3300004081\|Ga0063454_100518284	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300004114\|Ga0062593_102675133	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	568	Open in IMG/M
3300004643\|Ga0062591_100244240	All Organisms → cellular organisms → Bacteria	1363	Open in IMG/M
3300005167\|Ga0066672_10355238	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300005167\|Ga0066672_10435222	Not Available	857	Open in IMG/M
3300005174\|Ga0066680_10961039	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300005175\|Ga0066673_10145395	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1315	Open in IMG/M
3300005181\|Ga0066678_10192934	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1297	Open in IMG/M
3300005181\|Ga0066678_11131323	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	503	Open in IMG/M
3300005187\|Ga0066675_10409460	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300005187\|Ga0066675_10947177	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300005187\|Ga0066675_11347167	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	525	Open in IMG/M
3300005332\|Ga0066388_101966125	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1047	Open in IMG/M
3300005332\|Ga0066388_106259237	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	601	Open in IMG/M
3300005335\|Ga0070666_10520744	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300005445\|Ga0070708_100719452	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	939	Open in IMG/M
3300005450\|Ga0066682_10523407	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300005450\|Ga0066682_10565865	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	718	Open in IMG/M
3300005451\|Ga0066681_10841585	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	552	Open in IMG/M
3300005454\|Ga0066687_10078392	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1618	Open in IMG/M
3300005543\|Ga0070672_100201548	All Organisms → cellular organisms → Bacteria	1664	Open in IMG/M
3300005553\|Ga0066695_10158589	All Organisms → cellular organisms → Bacteria	1410	Open in IMG/M
3300005557\|Ga0066704_10629405	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	685	Open in IMG/M
3300005559\|Ga0066700_10180639	All Organisms → cellular organisms → Bacteria	1448	Open in IMG/M
3300005560\|Ga0066670_10366007	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	880	Open in IMG/M
3300005566\|Ga0066693_10265300	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	682	Open in IMG/M
3300005569\|Ga0066705_10337721	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300005569\|Ga0066705_10376200	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	892	Open in IMG/M
3300005574\|Ga0066694_10281631	All Organisms → cellular organisms → Bacteria → Proteobacteria	790	Open in IMG/M
3300005576\|Ga0066708_10170365	All Organisms → cellular organisms → Bacteria	1350	Open in IMG/M
3300005587\|Ga0066654_10608594	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300005598\|Ga0066706_10335347	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300005718\|Ga0068866_10821509	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300005764\|Ga0066903_100856117	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1637	Open in IMG/M
3300005764\|Ga0066903_102274745	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1047	Open in IMG/M
3300006031\|Ga0066651_10625797	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	574	Open in IMG/M
3300006046\|Ga0066652_101282945	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	691	Open in IMG/M
3300006046\|Ga0066652_101546675	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300006175\|Ga0070712_101741562	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300006796\|Ga0066665_10195420	All Organisms → cellular organisms → Bacteria	1566	Open in IMG/M
3300006797\|Ga0066659_10455718	All Organisms → cellular organisms → Bacteria	1017	Open in IMG/M
3300006797\|Ga0066659_11119527	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	658	Open in IMG/M
3300007255\|Ga0099791_10150775	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1086	Open in IMG/M
3300009088\|Ga0099830_10636451	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae → Geothrix	876	Open in IMG/M
3300010322\|Ga0134084_10150164	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300010333\|Ga0134080_10298467	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	722	Open in IMG/M
3300010337\|Ga0134062_10223863	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300010366\|Ga0126379_13406908	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	532	Open in IMG/M
3300010366\|Ga0126379_13711027	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	512	Open in IMG/M
3300010373\|Ga0134128_12046722	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	630	Open in IMG/M
3300010376\|Ga0126381_102997454	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	671	Open in IMG/M
3300011120\|Ga0150983_14467206	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	546	Open in IMG/M
3300012198\|Ga0137364_10060584	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2555	Open in IMG/M
3300012203\|Ga0137399_10521200	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	997	Open in IMG/M
3300012203\|Ga0137399_11231036	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	630	Open in IMG/M
3300012205\|Ga0137362_11261104	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	624	Open in IMG/M
3300012207\|Ga0137381_10348652	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1291	Open in IMG/M
3300012207\|Ga0137381_10486812	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1077	Open in IMG/M
3300012208\|Ga0137376_10519373	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1033	Open in IMG/M
3300012211\|Ga0137377_10291462	All Organisms → cellular organisms → Bacteria	1566	Open in IMG/M
3300012285\|Ga0137370_10323577	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	924	Open in IMG/M
3300012356\|Ga0137371_10457243	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	987	Open in IMG/M
3300012357\|Ga0137384_11015691	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	667	Open in IMG/M
3300012361\|Ga0137360_10923194	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	753	Open in IMG/M
3300012361\|Ga0137360_11611965	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	554	Open in IMG/M
3300012582\|Ga0137358_11120153	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300012685\|Ga0137397_11140308	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300012917\|Ga0137395_10043728	All Organisms → cellular organisms → Bacteria	2782	Open in IMG/M
3300012918\|Ga0137396_10231840	All Organisms → cellular organisms → Bacteria	1360	Open in IMG/M
3300012923\|Ga0137359_10566906	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	998	Open in IMG/M
3300012925\|Ga0137419_10654668	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	848	Open in IMG/M
3300012944\|Ga0137410_11376923	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	612	Open in IMG/M
3300012958\|Ga0164299_10809446	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300012977\|Ga0134087_10531864	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	597	Open in IMG/M
3300012986\|Ga0164304_10004981	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	5305	Open in IMG/M
3300012986\|Ga0164304_10107006	All Organisms → cellular organisms → Bacteria	1680	Open in IMG/M
3300013297\|Ga0157378_12282839	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	593	Open in IMG/M
3300014157\|Ga0134078_10595692	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300014166\|Ga0134079_10148462	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300015199\|Ga0167647_1071688	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300015264\|Ga0137403_10150981	All Organisms → cellular organisms → Bacteria	2289	Open in IMG/M
3300015372\|Ga0132256_102765544	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300016270\|Ga0182036_10196227	All Organisms → cellular organisms → Bacteria	1476	Open in IMG/M
3300016270\|Ga0182036_10405203	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1063	Open in IMG/M
3300016404\|Ga0182037_11246181	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300017792\|Ga0163161_11628712	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300017930\|Ga0187825_10291661	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300017994\|Ga0187822_10026759	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1511	Open in IMG/M
3300018054\|Ga0184621_10309319	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	557	Open in IMG/M
3300018054\|Ga0184621_10331772	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300018075\|Ga0184632_10164933	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	977	Open in IMG/M
3300018081\|Ga0184625_10164511	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300018431\|Ga0066655_10501336	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300019362\|Ga0173479_10803237	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	521	Open in IMG/M
3300019874\|Ga0193744_1047913	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300019878\|Ga0193715_1045271	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	948	Open in IMG/M
3300019878\|Ga0193715_1062407	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300019881\|Ga0193707_1123736	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	750	Open in IMG/M
3300019886\|Ga0193727_1084225	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300020002\|Ga0193730_1050546	All Organisms → cellular organisms → Bacteria	1200	Open in IMG/M
3300020006\|Ga0193735_1052485	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1208	Open in IMG/M
3300020006\|Ga0193735_1148071	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	612	Open in IMG/M
3300020012\|Ga0193732_1020508	All Organisms → cellular organisms → Bacteria	1143	Open in IMG/M
3300020021\|Ga0193726_1029532	All Organisms → cellular organisms → Bacteria	2728	Open in IMG/M
3300020022\|Ga0193733_1108835	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	771	Open in IMG/M
3300020022\|Ga0193733_1143852	Not Available	648	Open in IMG/M
3300020581\|Ga0210399_11101313	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300020583\|Ga0210401_11120795	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	645	Open in IMG/M
3300021362\|Ga0213882_10252662	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	731	Open in IMG/M
3300021479\|Ga0210410_11368433	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	600	Open in IMG/M
3300022756\|Ga0222622_10351588	Not Available	1027	Open in IMG/M
3300025910\|Ga0207684_10097595	All Organisms → cellular organisms → Bacteria	2509	Open in IMG/M
3300025910\|Ga0207684_11367085	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	581	Open in IMG/M
3300025911\|Ga0207654_11165988	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300025914\|Ga0207671_10346591	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300025915\|Ga0207693_10169888	All Organisms → cellular organisms → Bacteria	1717	Open in IMG/M
3300025929\|Ga0207664_11768395	Not Available	541	Open in IMG/M
3300026297\|Ga0209237_1204043	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	631	Open in IMG/M
3300026312\|Ga0209153_1097464	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1101	Open in IMG/M
3300026316\|Ga0209155_1299818	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M
3300026527\|Ga0209059_1151212	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	845	Open in IMG/M
3300026550\|Ga0209474_10276236	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	1014	Open in IMG/M
3300026550\|Ga0209474_10462016	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	644	Open in IMG/M
3300026550\|Ga0209474_10514965	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	606	Open in IMG/M
3300026551\|Ga0209648_10573763	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300026552\|Ga0209577_10444384	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300027605\|Ga0209329_1082842	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	697	Open in IMG/M
3300027903\|Ga0209488_10685153	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	736	Open in IMG/M
3300028380\|Ga0268265_11904757	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300028717\|Ga0307298_10062992	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300028793\|Ga0307299_10403483	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	512	Open in IMG/M
3300028819\|Ga0307296_10729063	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	541	Open in IMG/M
3300028875\|Ga0307289_10441550	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	535	Open in IMG/M
3300028881\|Ga0307277_10583213	Not Available	502	Open in IMG/M
3300028906\|Ga0308309_10161762	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1812	Open in IMG/M
3300031231\|Ga0170824_124881312	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300031720\|Ga0307469_11456907	All Organisms → cellular organisms → Bacteria → Proteobacteria	654	Open in IMG/M
3300031897\|Ga0318520_10664108	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300031945\|Ga0310913_10838168	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	648	Open in IMG/M
3300031962\|Ga0307479_10449163	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1273	Open in IMG/M
3300031962\|Ga0307479_11460375	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	641	Open in IMG/M
3300032025\|Ga0318507_10508109	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300032035\|Ga0310911_10504775	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300032261\|Ga0306920_100043362	All Organisms → cellular organisms → Bacteria	6514	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.12%
Host-Associated	Host-Associated	5.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.54%
Plants	Host-Associated → Plants	5.88%
Aquatic	Environmental → Aquatic	4.58%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.92%
Sediment	Environmental → Aquatic → Sediment	3.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.96%
Freshwater	Environmental → Aquatic → Freshwater	1.31%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.43%
Loam	Environmental → Terrestrial → Soil → Loam	10.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.27%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.31%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.25%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	29.41%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.58%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.27%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.96%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.31%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.31%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.65%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	25.49%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.58%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.27%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.96%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.31%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.65%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.65%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.65%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.65%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.65%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.65%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
2170459011	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect Gram positive lysis 0-10cm	Environmental	Open in IMG/M
3300000878	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-5 cm-9A)- 1 week illumina	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300015199	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-2c, rock/snow interface)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019874	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a1	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020012	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L02_07355400	2170459007	Grass Soil	GVDNVSVFFLAEGEQPADEVMARLTTFIRAAKQTLDFCDLRHAIQ
L02_01431370	2170459007	Grass Soil	MDNVSVFFLAEGEQPADEVMARLTTFIRAAKQTLDFAIYDMR
F64_03704940	2170459011	Grass Soil	MDNVSVFFLAEGEQLADEVMARLTTFTRAAKQTLDFAIYDMRFSD
AL9A1W_12468321	3300000878	Permafrost	MDDFSVFFLAQGEQSADAVMARLTTFIRAAQQSLDLAVYDMRFSAPLRTALMSALRCLLYTSDAADERS
JGI1027J12803_1061045932	3300000955	Soil	MDDFSVFFLAQGEQSADAIMARLTTFIRAGQQSLDLAVYDMRFSAP
JGI1027J12803_1072167842	3300000955	Soil	MAGPNVDNVSVFFLAEGEQAADDVMARLTTFIRAAKQTLDFAIYDM
JGI10216J12902_1055555102	3300000956	Soil	MDTLSVFFLAEGEQAADDVMARLTTFIREAKQTLDFAIYDMRFSD
JGI10216J12902_1077535161	3300000956	Soil	MDDVSVFFLAEREQSTDEVMTRLTAFINGAKQTLDFAIYDMRFSDQLRARL
JGIcombinedJ43975_100164963	3300002899	Soil	MDNVSVFFLAEGEQSADEVMAQLTTFIHAAKQTLDFAIYEMRFSDPLKSS
Ga0063454_1005182841	3300004081	Soil	LDNLSVFFLAEGEQTADSVMARLTAFIATAKQSLDIAVYDMRFSESLRA
Ga0062593_1026751331	3300004114	Soil	MAGVGVDNVSVFFLAEGEQPADEVMARLTNFIRAAKQTLDFAIYD
Ga0062591_1002442402	3300004643	Soil	VPDDLAVFFLAQDEQSGESVMRRLTTFIGAAQRTLDFALYDMRLSDQLKNLLSAAL
Ga0066672_103552382	3300005167	Soil	MNNSAQDQLSVLFLAEGEQQPDAVMTRLTDFIGRARANLDFALYDMRFSDVLKNH
Ga0066672_104352221	3300005167	Soil	LNNLSVFFLAQGEQSADAVMARLTAFIRAATQTLDFALYDM
Ga0066680_109610391	3300005174	Soil	LHCAVDQAMGGPGVDNLSVFFLAQGEQSADAVMARLTTFIRAAKQTLDLAV
Ga0066673_101453951	3300005175	Soil	MDNLSVFFLAEREQSADDVMARLAVFVGGAKQTLDFAIYDMRFSDSL
Ga0066678_101929341	3300005181	Soil	MDNLSVFFLAQGEQSGDEVMARLTTFIRAARQSLDFAVYDMRFSDP
Ga0066678_111313231	3300005181	Soil	MAGLSVDNVSVFFLAEGEQAADEVMARLTTFIRAAKQTLDFAI
Ga0066675_104094602	3300005187	Soil	MAGPGVDNLSVFFLAQGEQTADAVMARLTTFIRAAKQTLDADAPSDF*
Ga0066675_109471773	3300005187	Soil	VNTLSVFFLAQGEQSADSVMERLTSFIRSATQTVDFAVYDM
Ga0066675_113471671	3300005187	Soil	MDSLSVFFLAQGEQSADAVMTRLTTFIRAAKQTLDLAVYDMRF
Ga0066388_1019661251	3300005332	Tropical Forest Soil	MSNMDNLSVVFLAEGEQSANDVLSRLTTFIRAAKQTLDFAIYDMRFSDP
Ga0066388_1062592372	3300005332	Tropical Forest Soil	MDNVSVFFLAEGEQLADEVMARLTTFIRAAKRTLDFAIYDMRFSDPLKASLSSAL
Ga0070666_105207443	3300005335	Switchgrass Rhizosphere	MDTLSVFFLAQGEQSADAVMARLTAFISAATHTLDFAVYDMRLSDHLK
Ga0070708_1007194521	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDDFSVFFLAQGEQSADAVMARLTTFIRAAQQSLDLAVYDMRFSAPLRTALI
Ga0066682_105234071	3300005450	Soil	VDNLSVFFLAQGEQSADAVMTRLTAFIRAAKQTLDLAVYDMRFSD
Ga0066682_105658651	3300005450	Soil	MAGPGVDNLSVFFLAQGEQTADAVMARLTTFIRAAKQTLDLAVYDMRFSDPLRTQL
Ga0066681_108415852	3300005451	Soil	VDNLSVFFLAEGEQTAGSVMARLTAFIRAAKQSLDIAVYDMRFGE
Ga0066687_100783922	3300005454	Soil	MDNLSVFFLAEGEQSGDDVMTRLVTFIRAAKQTLAFAIYDMRFSGPLRAQLAAALRERA
Ga0070672_1002015484	3300005543	Miscanthus Rhizosphere	MDTLSVFFLAQGEQSADAVMARLTAFISAATHTLDFAVYDMRLSDHLKTA
Ga0066695_101585894	3300005553	Soil	VDNLSVFFLAQGEQSADAVMARLTAFIRAAKQTLDLAVY
Ga0066704_106294051	3300005557	Soil	MGGPGVDSLSVFFLAQGEQSADAVMARLTTFIRAAKQTLDLAVYDMRFSDPLRTQ
Ga0066700_101806391	3300005559	Soil	MAGLGVDNVSVFFLAEGEQPAGEVMARLTTFIRAAKQTLDFAI
Ga0066670_103660071	3300005560	Soil	MDNVSVFFLAEGEQPADEVMARLTTFIRAAKQTLDFAIYDMRF
Ga0066693_102653002	3300005566	Soil	MDNLSAFFLAEGEQSGDDVMTRLITFIRAAKQTLAFAIYDMR
Ga0066705_103377213	3300005569	Soil	MDTLSVFFLAEGEQSADSVIERLTAFIQGATRTIDFAVYDMRFSDRLKSVLSS
Ga0066705_103762001	3300005569	Soil	MDNLSVFFLAEREQSADDVMARLAVFVGGAKQTLDFAIYD
Ga0066694_102816311	3300005574	Soil	MDNVSVFFLAEGEQSGDDVMTRLVTFIRAAKQTLAFAIYDMRFSDPLR
Ga0066708_101703652	3300005576	Soil	LRYAVDRAMAGPGVDNLSVFFLAQGEQTADAVMARLTTFIRAAKQTLDADAPSDF*
Ga0066654_106085942	3300005587	Soil	MNTLSVFFLAQGEQSADSVMEGLTLFIRSAPQTVDFAVYDMRFS
Ga0066706_103353473	3300005598	Soil	MAGLSVDNVSVFFLAEGEQAADEVMVRLAAFIRAAKQSLDFAIYDMRFSDP
Ga0068866_108215091	3300005718	Miscanthus Rhizosphere	VPDDLAVFFLAQDEQSGESVMRRLTTFIGAAQRTLDFALYDMRLSDQLKN
Ga0066903_1008561172	3300005764	Tropical Forest Soil	VLDNLSVFFLAEGEQSGDEVMARLTTFIRAAKQSLNFAIYDMRFSDPLR
Ga0066903_1022747452	3300005764	Tropical Forest Soil	MDNVSVFFLAESEQSADDVMSRLSTFIRAAKQTLAFAIYDMRFSDPLRIQLAAALRDRAE
Ga0066651_106257972	3300006031	Soil	MDSLSVFFLAQGEQSADAVMTRLTTFIRAAKQTLDLAVYDMRFGDTLKAALSSALRER
Ga0066652_1012829451	3300006046	Soil	VDNLSVFFLAEGEQSGDDVMTRLVTFIRAAKQTLAFAIYD
Ga0066652_1015466752	3300006046	Soil	MNTLSVFFLAEGEQTADSVMARLTDFIRAAKRTLDIAVYD
Ga0070712_1017415622	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MAGLNVDNVSVFFLAEGEQAADEVMARLTTFICAAKQTLDFAIYDM
Ga0066665_101954203	3300006796	Soil	MADFGVDNVLVFFLAEGEQSGDEVMARLTTFIRAARQSLDFAVYDMRFSN
Ga0066659_104557183	3300006797	Soil	MAGPGVDNLSVFFLAQGEQTADAVMARLTTFIRAAKQTLDLAVYDMRFSDPLRTQLASALRE
Ga0066659_111195272	3300006797	Soil	MGGPGVDNLSVFFLAEGEQSSAAVMARLTTFIRTAKQTLALAVYDM
Ga0099791_101507752	3300007255	Vadose Zone Soil	MDNLSVFFLAEGEQSGDDVMTRLVTFIRAAKQTLAFAIYDM
Ga0099830_106364512	3300009088	Vadose Zone Soil	VDNLSVFFLAQGEQSADAVMARLGGFIRAANQTLDLAVYDMRF
Ga0134084_101501641	3300010322	Grasslands Soil	MDNVSVFFLAEGEQSADDVMARLTTFIHAAKQSLAFAIYDMRFSDPL
Ga0134080_102984671	3300010333	Grasslands Soil	MNTLSVFVLAEGEQTADSVMARLTDFIRAAKHTLDIAVYDMRFSESLRAQLVAALRDRA
Ga0134062_102238631	3300010337	Grasslands Soil	VDNLSVFFLAEGEQPADSVMARLTAFIRAAKQSLDIAVYDMRFS
Ga0126379_134069082	3300010366	Tropical Forest Soil	MDNLSVFFLAEREQSADDVMARLTAFISDAEQTLDFAIYDMRFSD
Ga0126379_137110271	3300010366	Tropical Forest Soil	MDNLSVFFLAEGEQPADEVMARLTNFIRAATQTLDFAVYDM
Ga0134128_120467221	3300010373	Terrestrial Soil	LDNLAVFFLAEGEQTADAVMARLISLLRAARTSLEIAVYDMRFSDSLRAQLA
Ga0126381_1029974541	3300010376	Tropical Forest Soil	MDNLSVFFLAEGEQSADDVMAWLTAFIRGAKQTLDFAIYDMR
Ga0150983_144672062	3300011120	Forest Soil	VDNVSVLFLAEGEQPADEVMAWLTTFIRAAKQTLDF
Ga0137364_100605841	3300012198	Vadose Zone Soil	LDTLSVFFLAQGEQSADAVMARLTTFIRAAKQTLDLA
Ga0137399_105212001	3300012203	Vadose Zone Soil	VDNVSVFFLAQGEQSADAVMARLTAFIRAAKQTLDFAVYDM
Ga0137399_112310362	3300012203	Vadose Zone Soil	MDDLSVFFLAEGEQSANDVMARLTTFIHAAKQTLAFAIYDMRFSGPLRAQLAAALRERA
Ga0137362_112611042	3300012205	Vadose Zone Soil	MDNLSVFFLAEGEQSGDDVMTRLVTFIRAAKQTLAFAIYDMRLSD
Ga0137381_103486521	3300012207	Vadose Zone Soil	MDNLSVFFLAEREQSAEEVMARLVTFIRGAKQTLDFA
Ga0137381_104868123	3300012207	Vadose Zone Soil	MAGPGVDNLSVFFLAQGEQTADAVMARLTTFIRAANQTLDLAVYDMRFSDLLRTQLA
Ga0137376_105193731	3300012208	Vadose Zone Soil	MDNVSVFFLAEGEQSADDVMARLTTFIRAAKQSLAFAIYDMRFSDPLRTQL
Ga0137377_102914621	3300012211	Vadose Zone Soil	MAGLGVDNVSVFFLAEGEQPADEVMARLTTFIRAAKQTLDFAIYDMRF
Ga0137370_103235771	3300012285	Vadose Zone Soil	VDNLSVFFLAQGEQSADAVMARLTTFIRAAKQTLDLAVYDMRFSVPLRTQLALALRERAD
Ga0137371_104572431	3300012356	Vadose Zone Soil	VVDNLSVFILAEGEQSGDDVMARLVTFIRAAKQTLAF
Ga0137384_110156912	3300012357	Vadose Zone Soil	MDNLSVFFLAENEQSADDVMARLTTFIRAAKQTLAFAIYDMR
Ga0137360_109231942	3300012361	Vadose Zone Soil	MAGSGVDSLSVFFLAQGEQTADAVMARLTTFIRAAKQTLDLA
Ga0137360_116119651	3300012361	Vadose Zone Soil	MDNVSVFFLAEGEQPADEVMALLTTFIRAAKQTLD
Ga0137358_111201531	3300012582	Vadose Zone Soil	MAGVGVDNVSVFFLAEGEQPADEVMARLTTFIRAAKQTLDF
Ga0137397_111403081	3300012685	Vadose Zone Soil	VDTLAVFFLSQGEQSPNSVMERLITFLRGATRTLDFAVYDMRFGDPLKNA
Ga0137395_100437283	3300012917	Vadose Zone Soil	MDNLSVFFLAEGEQSGDDVMTRLVTFIRAAKQTLAFAIY
Ga0137396_102318403	3300012918	Vadose Zone Soil	MGGPSVDNLSVFFLAQGEQSADAVMARLTAFIHAA
Ga0137359_105669061	3300012923	Vadose Zone Soil	LDTLSVFLLAQGEQSADAVMARLTAFIRAARQTLDLAVYDM
Ga0137419_106546681	3300012925	Vadose Zone Soil	LDTLSVFFLAQGEQSADAVMARLTAFIGAAKQTLDFAVYDMR
Ga0137410_113769231	3300012944	Vadose Zone Soil	MDNLSVFFLAEREQSAEEVMARLVTFIRGAKQTLDFAIYDMRFSDS
Ga0164299_108094461	3300012958	Soil	MDSLSVFFLAQGEQTADSVMARLTEFIRAAKHSLDIAVYDMRFSESLRAHLVAALGERAKAGVQI
Ga0134087_105318642	3300012977	Grasslands Soil	MDNLSVFFLAEGEQSGDDVMTRLVTFIRAAKQTLAFAI
Ga0164304_100049811	3300012986	Soil	MDNLLVFFLAEGEQSADDVMARLTTFIRLAKQTLT
Ga0164304_101070061	3300012986	Soil	MDSLSVFFLAQGEQTADSVMARLTEFIRAAKHSLDIAVYDMRFSEALRAHLVAALGERAK
Ga0157378_122828392	3300013297	Miscanthus Rhizosphere	LSADTLSFLFLAQREQTADAVMSRLLEFVRGATQTLDFAVYDMRFTEPLKNAFRAALR
Ga0134078_105956921	3300014157	Grasslands Soil	MNTLSVFFLAEGEQTADSVMARLTDFIRAAKHTLDIAVYDMRFSE
Ga0134079_101484621	3300014166	Grasslands Soil	VDNLSVFFLAEGEQTADSVMARLTAFISAAKQSLDIAVYDMRFGEALRVQLVAALRERA
Ga0167647_10716881	3300015199	Glacier Forefield Soil	MDTLSVFFLAQDEQPADAVMARLTAFIRAATQTLDFALYD
Ga0137403_101509814	3300015264	Vadose Zone Soil	MAGVGVDNVSVFFLAEGEQPADEVMTRLTTFIRAAKQTLDFAIYDMRFSDP
Ga0132256_1027655441	3300015372	Arabidopsis Rhizosphere	VSNEKSDGLSVFFLAEGEQTADSVLARLTSFVSEAKQSLDFAVYDMRLDDPLKNELTRALAERAKAGVDIRI
Ga0182036_101962273	3300016270	Soil	MDNVSVFFLAEREQSADKVMARLTAFINGATQTLDFA
Ga0182036_104052032	3300016270	Soil	MDNFLVFFLAEREQSADDVMTRLTAFIHGARQTLDFAIY
Ga0182037_112461811	3300016404	Soil	SSMDNVSVFFLAEREQSLDDVMGRLTAFISGAKQTLDFAVYDMRFSDALGAQLGDGIT
Ga0163161_116287121	3300017792	Switchgrass Rhizosphere	VPDDLAVFFLAQDEQSAESVMGRLTTFIGAAQQTLDFAVYDMRLSDPLKNAL
Ga0187825_102916611	3300017930	Freshwater Sediment	MDSVSVFFLAQGEQSAASVMDRLVTFVRGATRSLDFAVYDMRLSDPLKATL
Ga0187822_100267591	3300017994	Freshwater Sediment	MDSLSVFFLAQGEQSGDEVMARLTAFIRTARQSLDFAVYD
Ga0184621_103093192	3300018054	Groundwater Sediment	MAGLGVDNVSVFFLAEGEQPGDEVMARLTTFIRAAK
Ga0184621_103317721	3300018054	Groundwater Sediment	MAGLGVGNVSVFFLAEGEQPADDVMARLTTFIRAARQTLDFAIYDMR
Ga0184632_101649333	3300018075	Groundwater Sediment	MAGLGVDNVSVFFLAEGEQPADEVMARLTTFIRAAKQ
Ga0184625_101645112	3300018081	Groundwater Sediment	MAGVGVDNVSVFFLAEGEQSADAVMGRLTKFIRAAKQTLDLAVYDMRF
Ga0066655_105013363	3300018431	Grasslands Soil	MAGPGVDNLSVFFLAQGEQTADAVMARLTTFIRAAKQTL
Ga0173479_108032371	3300019362	Soil	MAGLGVDNVSVFFLAEGEQPADEVMARLTTFIRAAKQT
Ga0193744_10479131	3300019874	Soil	MDNLSVFFLAQGEQTADSVMARLTAFIRAAKQSLDIAVYDMRF
Ga0193715_10452711	3300019878	Soil	MDNVSVFFLAEGEQRADEVMARLTTFIRAAKQTLDFAIYDMRF
Ga0193715_10624072	3300019878	Soil	VDNVSVFFLAEDEQPADEVMARLTTFIRAAKQTLDFAIYDMR
Ga0193707_11237362	3300019881	Soil	MAGLGVDNVSVFFLAEGEQPADEVMARLTTFIRAAKQTLDFAIYDMR
Ga0193727_10842252	3300019886	Soil	MAGLGVDNVSVFFLAEGEQPADEVMARLTTFIRAAKQTLDFAIYDMRAIR
Ga0193730_10505461	3300020002	Soil	MAGLGVDNVSVFFLAEGEQPAEEVMARLTTFIRAAKQTLD
Ga0193735_10524851	3300020006	Soil	MAGLGVDNLSVFFLAEGEQRADEVMARLTTFIRAAKQTLD
Ga0193735_11480711	3300020006	Soil	MDNLAVFFLAEREQSADEVMARLTAFISGAKHTLDFAVYDMRLSDPL
Ga0193732_10205081	3300020012	Soil	MAGLGVDNVSVFFLAEGEQPADEVMARLTTFIRAAKQTLDFAI
Ga0193726_10295325	3300020021	Soil	MSDSLSVFFLAQDEQAADAVMARLTAFIRATQRTLDLAVYDMRFTEPLRAQL
Ga0193733_11088351	3300020022	Soil	MDNVSVFFLAEGEQRADDVMVRLTTFIHAAKQTLDFAIYDMRFSDPL
Ga0193733_11438521	3300020022	Soil	VDTLSVFFLAQGEQTADMVMARLLAFIGTAKRSLDFAVYDMRLSDRLKAALSS
Ga0210399_111013131	3300020581	Soil	VDTLSVCFLAQGEQSADSVMERLTTFIRGATRTLDFAVYDMRFSDPLKNALD
Ga0210401_111207952	3300020583	Soil	MGGAGVDNLSVFFLAQGEQSADAVMARLTTFIRAAKQTLD
Ga0213882_102526622	3300021362	Exposed Rock	MDSLSVFFLAQGEQSSAAVMDRLTTFIGGAEHTLDFAIYDMRFSPSLKAALTS
Ga0210410_113684331	3300021479	Soil	MGGAGVDNLSVFFLAQGEQSADAVMIRLTTFIRAAKQTI
Ga0222622_103515881	3300022756	Groundwater Sediment	VDTLSVFFLAQGEQTADMVMARLLAFIGTAKRSLDFAVYDMRLSDRLKAALS
Ga0207684_100975953	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VDTLSVVFLAQGEQSADSVMERLTAFIRGATQTLDFAV
Ga0207684_113670851	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDNLSVLFLAEREQSAGDVMARLAAFIRGAKQTLDFAI
Ga0207654_111659881	3300025911	Corn Rhizosphere	MDTLSVFFLAQGEQSAASVMARLTNFIGAAKQSLDFAVYDMRLSDP
Ga0207671_103465911	3300025914	Corn Rhizosphere	MDTLSVFFLAQGEQSAASVMARLTNFISAAKQSLDFAVYDMRLSDPL
Ga0207693_101698881	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MAGLGVDNVSVFFLAEGEQPADEVMARLTTFIRAAKQTLDFA
Ga0207664_117683951	3300025929	Agricultural Soil	VDTLSVFFLAQGEQSADSVMERLTTFLRGATRALDI
Ga0209237_12040431	3300026297	Grasslands Soil	MDNLSVFFLAEGEQSGDDVMTRLVTFIRAAKQTLAFAIYD
Ga0209153_10974642	3300026312	Soil	MDNLSVFFLAEREQSADDVMARLAVFVGGAKQTLDF
Ga0209155_12998182	3300026316	Soil	MDSLSVFFLAQGEQSADAVMTRLATFIRAAKQTLDLAVYDMRFGDALKAALSSAL
Ga0209059_11512122	3300026527	Soil	VDNVSVFFLAQGEQSADAVMARLTAFIRAAKQTLDFAVYD
Ga0209474_102762361	3300026550	Soil	MAGLSVDNVSVFFLAEGEQAADEVMARLTAFIRAAKQSLDFAIYDMRFSDP
Ga0209474_104620162	3300026550	Soil	MAGPGVDNLSVFFLAQGEQTADAVMARLTTFIRAAKQTLDLAVYD
Ga0209474_105149651	3300026550	Soil	MDNVSVFFLAEGEQSSDYVMTRLVTFIRAAKQTLVFAIYDMRFS
Ga0209648_105737632	3300026551	Grasslands Soil	VDNLSVFFLAQGEQSADAVMARLTTFIRAAKQTLDLAVYDMRFSDPLRTQL
Ga0209577_104443841	3300026552	Soil	MDNVSVFFLAEGEQSSDDVMTRLVTFIHAAKQTLVFAIYDMRFSDLLRA
Ga0209329_10828422	3300027605	Forest Soil	LPSTVAKAMGDLGVDTLSVFFLAQGEQSADAVMARLTTFIRAAKQTLDLAVYDMRFSDPLRTQL
Ga0209488_106851532	3300027903	Vadose Zone Soil	MDNLSVFFVAEGEQSGDDVMTRLVTFIRAAKQTLAFAIYDMRFSDPLK
Ga0268265_119047571	3300028380	Switchgrass Rhizosphere	VPDDLAVFFLAQDEQSGESVMRRLTTFIGAAQRTLDFALYDMRLSDQLKNLLSAA
Ga0307298_100629923	3300028717	Soil	MAGLGVDNVWVFFLAEGEQPADEVMARLTTFIRAAKQTLDFAI
Ga0307299_104034831	3300028793	Soil	MAGLGVDNVSVFFLAEGEQPGDEVMARLTTFTRAAKQTLDFAIYDMRFSDP
Ga0307296_107290632	3300028819	Soil	MDDLSVFFLAECEQSADDVMARLTTFIRAAKQTLAFAIYDMRFSDSLRAQLAAALRERA
Ga0307289_104415501	3300028875	Soil	MAGLGVDNVSVFFLAEGEQPADEVMARLTTFIRAAKQTLDLAVYDMRFS
Ga0307277_105832132	3300028881	Soil	VDTLSVFFLAQGEQTADMVMARLLAFIGTAKRSLDFAVYDMRLSDRLKAALSSAL
Ga0308309_101617621	3300028906	Soil	MDNLSVFFLAQGEQPANAVMARLTTFLRAAKQTLDLAVYDM
Ga0170824_1248813122	3300031231	Forest Soil	MVGLGVDNVSVFFLAEGEQPADEVMARLITFIRAA
Ga0307469_114569071	3300031720	Hardwood Forest Soil	MADLGVDNVSVFFLAEGEQPAEEVMARLTTFLRGAKQTLDFAIYDMRFSDPLK
Ga0318520_106641081	3300031897	Soil	VDTLSVFFLAQGEQSAASVVQRLKAFVLSARKTLDIAVYDMRFGD
Ga0310913_108381681	3300031945	Soil	MDNLSVFFLAEREQSADEVMARLTAFISGAKQSLDFAIYDMRFSDSLRTQLTAALREK
Ga0307479_104491632	3300031962	Hardwood Forest Soil	LDTLSVFLLAQGEQSADAVMARLTAFIRAAKQTLDLAVYDMR
Ga0307479_114603751	3300031962	Hardwood Forest Soil	MGDPSVDNLSVFFLAQGEQSADAVMARLTAFIRAAKQTLDL
Ga0318507_105081091	3300032025	Soil	VDTLSVFFLAQGEQSAASVVQRLKAFVLSARRTLDIAVYDMRFGDPLKAELFSAL
Ga0310911_105047751	3300032035	Soil	MDNLSVFFLAEGEQSAEDVMARLTDFISGAKRALEFAIYDMRFSGPLRA
Ga0306920_1000433626	3300032261	Soil	MDNVSVFFLAEREQSLDDVMGRLTAFISGAKQTLDFAVYDMRFSDALGAQLGDGIT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F045241

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences