Metagenome / Metatranscriptome Family F044676

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F044676
Family Type	Metagenome / Metatranscriptome
Number of Sequences	154
Average Sequence Length	46 residues
Representative Sequence	EALAHTLTLQPDLSSAHVENNTVYANPADRSRFLEGLRKAGLKN
Number of Associated Samples	130
Number of Associated Scaffolds	154

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.01 %
% of genes near scaffold ends (potentially truncated)	94.81 %
% of genes from short scaffolds (< 2000 bps)	91.56 %
Associated GOLD sequencing projects	119
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.831 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.130 % of family members)
Environment Ontology (ENVO)	Unclassified (31.818 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.299 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.67% β-sheet: 0.00% Coil/Unstructured: 58.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 154 Family Scaffolds
PF12146	Hydrolase_4	8.44
PF00156	Pribosyltran	5.84
PF13414	TPR_11	3.90
PF03061	4HBT	3.90
PF08028	Acyl-CoA_dh_2	2.60
PF00353	HemolysinCabind	2.60
PF14534	DUF4440	2.60
PF13577	SnoaL_4	2.60
PF00486	Trans_reg_C	1.95
PF12728	HTH_17	1.95
PF06568	DUF1127	1.95
PF12697	Abhydrolase_6	1.95
PF01479	S4	1.30
PF07719	TPR_2	1.30
PF13683	rve_3	1.30
PF02738	MoCoBD_1	1.30
PF01569	PAP2	0.65
PF05977	MFS_3	0.65
PF01546	Peptidase_M20	0.65
PF16576	HlyD_D23	0.65
PF13586	DDE_Tnp_1_2	0.65
PF13186	SPASM	0.65
PF13701	DDE_Tnp_1_4	0.65
PF05199	GMC_oxred_C	0.65
PF13517	FG-GAP_3	0.65
PF03447	NAD_binding_3	0.65
PF00248	Aldo_ket_red	0.65
PF05120	GvpG	0.65
PF04909	Amidohydro_2	0.65
PF04079	SMC_ScpB	0.65
PF00166	Cpn10	0.65
PF13424	TPR_12	0.65
PF13649	Methyltransf_25	0.65
PF02518	HATPase_c	0.65
PF13437	HlyD_3	0.65
PF01464	SLT	0.65
PF13411	MerR_1	0.65

COG ID	Name	Functional Category	% Frequency in 154 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	2.60
COG5457	Uncharacterized conserved protein YjiS, DUF1127 family	Function unknown [S]	1.95
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.65
COG1386	Chromosome segregation and condensation protein ScpB	Transcription [K]	0.65
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.65
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.65

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.83 %
Unclassified	root	N/A	31.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.83 %
Unclassified	root	N/A	31.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.83 %
Unclassified	root	N/A	31.17 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	48.05 %
Unclassified	root	N/A	31.17 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.65 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.65 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	34.42 %
Unclassified	root	N/A	31.17 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.65 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.65 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.17 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	24.68 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.65 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.65 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.65 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.65 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.17 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	9.74 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1.30 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.30 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	1.30 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.65 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.65 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.65 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.65 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.65 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.17 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	9.09 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.30 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1.30 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.30 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.65 %
Pseudorhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes	0.65 %
Rivibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rivibacter	0.65 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.65 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.65 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.17 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.30 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	1.30 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1.30 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.30 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1.30 %
Rivibacter subsaxonicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rivibacter → Rivibacter subsaxonicus	0.65 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.65 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.65 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.65 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.65 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.17 %
Bradyrhizobium sp. SHOUNA76	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SHOUNA76	1.30 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1.30 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1.30 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.30 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1.30 %
Rivibacter subsaxonicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rivibacter → Rivibacter subsaxonicus	0.65 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.65 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.65 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.65 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.65 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.65 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0443946	Not Available	575	Open in IMG/M
3300000955\|JGI1027J12803_100212327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1673	Open in IMG/M
3300003373\|JGI25407J50210_10117242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	656	Open in IMG/M
3300003659\|JGI25404J52841_10077944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	692	Open in IMG/M
3300004070\|Ga0055488_10085677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	746	Open in IMG/M
3300004643\|Ga0062591_101789713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	626	Open in IMG/M
3300005162\|Ga0066814_10006183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1318	Open in IMG/M
3300005204\|Ga0068997_10086176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	660	Open in IMG/M
3300005329\|Ga0070683_100720385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	956	Open in IMG/M
3300005331\|Ga0070670_101175763	Not Available	701	Open in IMG/M
3300005332\|Ga0066388_103863512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	764	Open in IMG/M
3300005332\|Ga0066388_106557753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	587	Open in IMG/M
3300005332\|Ga0066388_107543875	All Organisms → cellular organisms → Bacteria → Proteobacteria	546	Open in IMG/M
3300005332\|Ga0066388_108403587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	514	Open in IMG/M
3300005332\|Ga0066388_108406489	Not Available	514	Open in IMG/M
3300005334\|Ga0068869_102050936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	514	Open in IMG/M
3300005335\|Ga0070666_10818012	Not Available	687	Open in IMG/M
3300005340\|Ga0070689_101105785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	708	Open in IMG/M
3300005344\|Ga0070661_101337746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	602	Open in IMG/M
3300005353\|Ga0070669_100221873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1495	Open in IMG/M
3300005438\|Ga0070701_10552150	All Organisms → cellular organisms → Bacteria → Proteobacteria	756	Open in IMG/M
3300005455\|Ga0070663_102055998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	514	Open in IMG/M
3300005518\|Ga0070699_100475154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1134	Open in IMG/M
3300005535\|Ga0070684_101427012	All Organisms → cellular organisms → Bacteria → Proteobacteria	652	Open in IMG/M
3300005543\|Ga0070672_101342404	Not Available	639	Open in IMG/M
3300005544\|Ga0070686_101818465	Not Available	519	Open in IMG/M
3300005564\|Ga0070664_100590485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1029	Open in IMG/M
3300005564\|Ga0070664_101210701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	712	Open in IMG/M
3300005614\|Ga0068856_100128706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2536	Open in IMG/M
3300005616\|Ga0068852_101463962	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300005618\|Ga0068864_102452793	Not Available	528	Open in IMG/M
3300005713\|Ga0066905_101677131	All Organisms → cellular organisms → Bacteria → Proteobacteria	583	Open in IMG/M
3300005713\|Ga0066905_101753893	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300005764\|Ga0066903_105226648	All Organisms → cellular organisms → Bacteria → Proteobacteria	687	Open in IMG/M
3300005764\|Ga0066903_107725409	All Organisms → cellular organisms → Bacteria → Proteobacteria	553	Open in IMG/M
3300005834\|Ga0068851_10138269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1323	Open in IMG/M
3300005834\|Ga0068851_10617476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	661	Open in IMG/M
3300005841\|Ga0068863_101929521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	600	Open in IMG/M
3300005937\|Ga0081455_10087714	All Organisms → cellular organisms → Bacteria	2531	Open in IMG/M
3300005937\|Ga0081455_10329638	Not Available	1084	Open in IMG/M
3300005985\|Ga0081539_10245540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	798	Open in IMG/M
3300005985\|Ga0081539_10492065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	508	Open in IMG/M
3300006046\|Ga0066652_101497593	All Organisms → cellular organisms → Bacteria → Proteobacteria	626	Open in IMG/M
3300006048\|Ga0075363_100453480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	758	Open in IMG/M
3300006058\|Ga0075432_10083865	Not Available	1158	Open in IMG/M
3300006173\|Ga0070716_100948269	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300006175\|Ga0070712_100772899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	823	Open in IMG/M
3300006178\|Ga0075367_10443948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	822	Open in IMG/M
3300006237\|Ga0097621_100577538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1025	Open in IMG/M
3300006358\|Ga0068871_100365103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1279	Open in IMG/M
3300006577\|Ga0074050_11718865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	920	Open in IMG/M
3300006603\|Ga0074064_11098878	All Organisms → cellular organisms → Bacteria → Proteobacteria	522	Open in IMG/M
3300006844\|Ga0075428_100019019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7597	Open in IMG/M
3300006880\|Ga0075429_101568437	Not Available	572	Open in IMG/M
3300006969\|Ga0075419_10125474	Not Available	1665	Open in IMG/M
3300006969\|Ga0075419_10634996	Not Available	752	Open in IMG/M
3300009094\|Ga0111539_11196618	Not Available	883	Open in IMG/M
3300009100\|Ga0075418_10024515	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	6604	Open in IMG/M
3300009100\|Ga0075418_12246527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	595	Open in IMG/M
3300009101\|Ga0105247_10197749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1349	Open in IMG/M
3300009101\|Ga0105247_10244415	All Organisms → cellular organisms → Bacteria	1224	Open in IMG/M
3300009101\|Ga0105247_11551730	Not Available	542	Open in IMG/M
3300009148\|Ga0105243_12994143	Not Available	512	Open in IMG/M
3300009156\|Ga0111538_10357031	Not Available	1850	Open in IMG/M
3300009174\|Ga0105241_11975744	Not Available	573	Open in IMG/M
3300009553\|Ga0105249_10218051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1876	Open in IMG/M
3300009789\|Ga0126307_11447920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	557	Open in IMG/M
3300010043\|Ga0126380_10605887	All Organisms → cellular organisms → Bacteria → Proteobacteria	863	Open in IMG/M
3300010043\|Ga0126380_11957619	Not Available	535	Open in IMG/M
3300010360\|Ga0126372_11452851	Not Available	720	Open in IMG/M
3300010362\|Ga0126377_10233709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SHOUNA76	1780	Open in IMG/M
3300010362\|Ga0126377_10818324	All Organisms → cellular organisms → Bacteria → Proteobacteria	991	Open in IMG/M
3300010396\|Ga0134126_10749981	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300012285\|Ga0137370_10668516	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300012505\|Ga0157339_1035739	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300012948\|Ga0126375_11000548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	681	Open in IMG/M
3300012951\|Ga0164300_10199793	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300012951\|Ga0164300_10215764	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300012958\|Ga0164299_10462813	Not Available	833	Open in IMG/M
3300012960\|Ga0164301_10268862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1130	Open in IMG/M
3300012987\|Ga0164307_10687910	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300012989\|Ga0164305_10384339	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300013105\|Ga0157369_11312592	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300013296\|Ga0157374_10742228	All Organisms → cellular organisms → Bacteria → Proteobacteria	996	Open in IMG/M
3300014969\|Ga0157376_10904070	All Organisms → cellular organisms → Bacteria → Proteobacteria	901	Open in IMG/M
3300015077\|Ga0173483_10042087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1713	Open in IMG/M
3300015077\|Ga0173483_10713679	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300015077\|Ga0173483_10927578	Not Available	515	Open in IMG/M
3300015371\|Ga0132258_10604282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2754	Open in IMG/M
3300015374\|Ga0132255_103500585	Not Available	668	Open in IMG/M
3300016357\|Ga0182032_10130670	All Organisms → cellular organisms → Bacteria → Proteobacteria	1828	Open in IMG/M
3300016404\|Ga0182037_10706798	All Organisms → cellular organisms → Bacteria → Proteobacteria	863	Open in IMG/M
3300017999\|Ga0187767_10014023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1629	Open in IMG/M
3300018067\|Ga0184611_1221450	All Organisms → cellular organisms → Bacteria → Proteobacteria	673	Open in IMG/M
3300018074\|Ga0184640_10276145	Not Available	763	Open in IMG/M
3300018468\|Ga0066662_10437396	All Organisms → cellular organisms → Bacteria	1166	Open in IMG/M
3300018469\|Ga0190270_10029253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3556	Open in IMG/M
3300018469\|Ga0190270_13060225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	529	Open in IMG/M
3300018476\|Ga0190274_10059310	Not Available	2823	Open in IMG/M
3300018920\|Ga0190273_10705619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	783	Open in IMG/M
3300019362\|Ga0173479_10608376	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300019886\|Ga0193727_1069080	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300020005\|Ga0193697_1116431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	625	Open in IMG/M
3300023263\|Ga0247800_1069711	Not Available	672	Open in IMG/M
3300023270\|Ga0247784_1115679	Not Available	689	Open in IMG/M
3300025901\|Ga0207688_10388992	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300025907\|Ga0207645_10827942	Not Available	629	Open in IMG/M
3300025925\|Ga0207650_10507182	All Organisms → cellular organisms → Bacteria → Proteobacteria	1009	Open in IMG/M
3300025926\|Ga0207659_11316470	Not Available	620	Open in IMG/M
3300025929\|Ga0207664_11091358	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300025936\|Ga0207670_10356745	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300025940\|Ga0207691_10173625	Not Available	1886	Open in IMG/M
3300025945\|Ga0207679_10464042	All Organisms → cellular organisms → Bacteria → Proteobacteria	1125	Open in IMG/M
3300025945\|Ga0207679_10853966	Not Available	831	Open in IMG/M
3300025949\|Ga0207667_11709223	Not Available	596	Open in IMG/M
3300025953\|Ga0210068_1035782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	747	Open in IMG/M
3300025972\|Ga0207668_10882868	Not Available	795	Open in IMG/M
3300025972\|Ga0207668_11124332	All Organisms → cellular organisms → Bacteria → Proteobacteria	705	Open in IMG/M
3300026075\|Ga0207708_10806962	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300026078\|Ga0207702_10578571	Not Available	1101	Open in IMG/M
3300026095\|Ga0207676_10756011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	946	Open in IMG/M
3300026374\|Ga0257146_1038736	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300026886\|Ga0207982_1001998	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300027523\|Ga0208890_1042711	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300027907\|Ga0207428_10287195	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300027909\|Ga0209382_10049578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5006	Open in IMG/M
3300027909\|Ga0209382_11261180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rivibacter → Rivibacter subsaxonicus	752	Open in IMG/M
3300027910\|Ga0209583_10114192	Not Available	1059	Open in IMG/M
3300028704\|Ga0307321_1070654	Not Available	682	Open in IMG/M
3300028708\|Ga0307295_10042641	All Organisms → cellular organisms → Bacteria → Proteobacteria	1158	Open in IMG/M
3300028711\|Ga0307293_10076878	Not Available	1052	Open in IMG/M
3300028712\|Ga0307285_10140001	Not Available	658	Open in IMG/M
3300028768\|Ga0307280_10019805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1925	Open in IMG/M
3300028782\|Ga0307306_10035551	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300028791\|Ga0307290_10051489	All Organisms → cellular organisms → Bacteria	1484	Open in IMG/M
3300028796\|Ga0307287_10186043	Not Available	789	Open in IMG/M
3300028796\|Ga0307287_10363632	All Organisms → cellular organisms → Bacteria → Proteobacteria	545	Open in IMG/M
3300028812\|Ga0247825_10778561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	690	Open in IMG/M
3300028814\|Ga0307302_10613602	Not Available	541	Open in IMG/M
3300030989\|Ga0308196_1049561	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300031198\|Ga0307500_10010788	All Organisms → cellular organisms → Bacteria	1870	Open in IMG/M
3300031455\|Ga0307505_10652258	Not Available	514	Open in IMG/M
3300031474\|Ga0170818_111195400	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300031770\|Ga0318521_10088166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SHOUNA76	1687	Open in IMG/M
3300031858\|Ga0310892_10710519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	690	Open in IMG/M
3300032003\|Ga0310897_10425668	Not Available	632	Open in IMG/M
3300032174\|Ga0307470_10252935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1165	Open in IMG/M
3300033433\|Ga0326726_12500123	Not Available	501	Open in IMG/M
3300034090\|Ga0326723_0184148	Not Available	923	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	59.74%
Host-Associated	Host-Associated	40.26%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.84%
Plants	Host-Associated → Plants	40.26%
Aquatic	Environmental → Aquatic	3.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.03%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.99%
Roots	Host-Associated → Plants → Roots	3.25%
Marine	Environmental → Aquatic → Marine	1.95%
Sediment	Environmental → Aquatic → Sediment	1.95%
Peat	Environmental → Terrestrial → Peat	1.30%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.61%
Loam	Environmental → Terrestrial → Soil → Loam	13.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.64%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.04%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.39%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.95%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.95%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.30%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.30%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.65%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.39%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.14%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.49%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.60%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.95%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.30%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.30%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.30%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.30%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.65%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.65%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.13%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.25%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.25%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.25%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.60%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.95%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.95%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.30%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.30%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.30%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.30%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.30%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.30%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.30%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.30%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.65%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.65%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.65%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.65%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.65%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.65%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.65%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001116	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300004070	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005204	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012505	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610	Host-Associated	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300023263	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6	Environmental	Open in IMG/M
3300023270	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L169-409R-5	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025953	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026886	Soil and rhizosphere microbial communities from Laval, Canada - mgHAB (SPAdes)	Environmental	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300030989	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_04439461	3300000033	Soil	GMLGRTDEAKEALVRTLTMQPDLSSAHVANDTVYSDPDVRARFLEGLRKAGLQS*
JGI1027J12803_1002123271	3300000955	Soil	LQPDLSSAHVANNTVFANPDDRARFLLGLQRAGLKD*
JGI12627J13344_1042041	3300001116	Forest Soil	PKHSGAWRLLTVSLGLLGKTDEAKAALAQTLKLQPDLSLNHVESNTIYADPVDRARFREGLLKAGLDR*
JGI25407J50210_101172422	3300003373	Tabebuia Heterophylla Rhizosphere	EEAQAALAHTLTLQPDLSSAHVVNDTVFADAADRSRFLEGLRKAGLKX*
JGI25404J52841_100779442	3300003659	Tabebuia Heterophylla Rhizosphere	LLGKIDEAREALARTLALQPDLSSAHVANNTVFANPDDRARFLLGLQKAGLRD*
Ga0055488_100856773	3300004070	Natural And Restored Wetlands	IDEAKQALAHARSLQPDLSLNHVEKNTVYVDPADRARFLQGLRNAGLQD*
Ga0062591_1017897131	3300004643	Soil	ALAHTLKLQPDLSIDHVEKNTVYADPADRSRFLEGLRKAGLKG*
Ga0066814_100061832	3300005162	Soil	GRVDEAKAALAHTLTLQPDLSSAHVEINTVYANPEDRARFLEGLRKAGLKN*
Ga0068997_100861761	3300005204	Natural And Restored Wetlands	LLGRTEEARKALARTLTLQPDLSSAHVAQNTVYTDPLHRERFLQGLRNAGLED*
Ga0070683_1007203852	3300005329	Corn Rhizosphere	LGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAGLKN*
Ga0070670_1011757631	3300005331	Switchgrass Rhizosphere	VSLGLLGRIDEAKAALARTLTLQPDLSISHVEINTVYADPADRLRFREGLRKAGLEK*
Ga0066388_1038635123	3300005332	Tropical Forest Soil	AKEALVRTLTMQPDLSSAHVANDTVYSDADVRERFLEGLRRAGLKD*
Ga0066388_1065577531	3300005332	Tropical Forest Soil	AREALERTLALQPDLSSAHVTHDTVFVNANDRARFLQGLLNAGLKK*
Ga0066388_1075438752	3300005332	Tropical Forest Soil	RTLALQPDLSSAHVTHDTVFVNPNDRARFLQGLLNAGLKN*
Ga0066388_1084035872	3300005332	Tropical Forest Soil	AKEALVRTLTMQPDLSSAHVANDTVYSDPDVRERFLEGLRRAGLKD*
Ga0066388_1084064892	3300005332	Tropical Forest Soil	AREALVHTLSLQPDLSSAHVENNTVYTDPADRSRFLLGLQKAGLTT*
Ga0068869_1020509361	3300005334	Miscanthus Rhizosphere	DEAKAALARTLTLQPDLSISHVEINTVYADPADRLRFREGLRKAGLEK*
Ga0070666_108180123	3300005335	Switchgrass Rhizosphere	LGRIDEAKAALARTLTLQPDLSISHVEINTVYADPADRLRFREGLRKAGLEK*
Ga0070689_1011057852	3300005340	Switchgrass Rhizosphere	LGREDEARAALARTLALQPDLSIDHVETNTVYANAADRARFRDGLRKAGLEN*
Ga0070661_1013377461	3300005344	Corn Rhizosphere	EAKDALAHTMTLQPDLSSAHVEINTVYANPEDRARFLEGLRKAGLKN*
Ga0070669_1002218732	3300005353	Switchgrass Rhizosphere	DEAKDALAHTLTLQPDLSSAHVEINTVYANPEDRARFLEGLRKAGLKN*
Ga0070701_105521501	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	RTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAGLKN*
Ga0070663_1020559981	3300005455	Corn Rhizosphere	KDALAHTLTLQPDLASAHVEMNTVYANPQERSRFLEGLRKAGLKN*
Ga0070699_1004751542	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	RQALAHTLTLQPDLSLSHVEKNTVFANPSDRSRFLLGLQRAGLKD*
Ga0070684_1014270122	3300005535	Corn Rhizosphere	EAKAALTQTLTLQPDLSLAHVENNNIYAEPADRERFREGLLKAGLTR*
Ga0070672_1013424041	3300005543	Miscanthus Rhizosphere	ARTLELSPDFSLDHVEKNTVYADPADRARFLEGLRKAGLGG*
Ga0070686_1018184651	3300005544	Switchgrass Rhizosphere	ARTLELSPDFSLDHVEKNTIYADPADRARFLEGLRKAGLGG*
Ga0070664_1005904851	3300005564	Corn Rhizosphere	LLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAGLKN*
Ga0070664_1012107012	3300005564	Corn Rhizosphere	GKIDEAREALARTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAGLKN*
Ga0068856_1001287062	3300005614	Corn Rhizosphere	MTASLGMLGKLDDAREALARAQMLQPDLSSAQVESNTVYANPAERSRFIEGLRQAGLRH*
Ga0068852_1014639621	3300005616	Corn Rhizosphere	MQTLTLQPDLSSDHVVNNTVYVNSSDRSRFLLGLQKAGLKH*
Ga0068864_1024527932	3300005618	Switchgrass Rhizosphere	PDLSSAHVEINTVYANPEDRSRFLEGLRKAGLKN*
Ga0066905_1016771311	3300005713	Tropical Forest Soil	TLTMQPDLSSAHVADNTVYADPADRSRFLEGLRKAGLKD*
Ga0066905_1017538932	3300005713	Tropical Forest Soil	TMQPDLSSAHVANDTVYSDPDVRARFLEGLRKAGLQN*
Ga0066903_1052266482	3300005764	Tropical Forest Soil	DEAKEALVRTLTMHPDLSSAHVENDTVFSDPADRERFLEGLRRAGLKN*
Ga0066903_1077254091	3300005764	Tropical Forest Soil	RTLALQPDLSSAHVTHDTVFVNPNDRARFLQGLLNAGLKY*
Ga0068851_101382692	3300005834	Corn Rhizosphere	LLGRVDEAKDALAHTLTLQPDLSSAHVEINTVYANPEDRARFLEGLRKAGLKN*
Ga0068851_106174762	3300005834	Corn Rhizosphere	MQTLALQPDLSSDHVVNNTVYVNSSDRSRFLLGLQKAGLKH*
Ga0068863_1019295211	3300005841	Switchgrass Rhizosphere	GLLGKIDEAREALARTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAGLKN*
Ga0081455_100877145	3300005937	Tabebuia Heterophylla Rhizosphere	QPDLSSAHVANNTVFANPDDRARFLLGLQRAGLKD*
Ga0081455_103296382	3300005937	Tabebuia Heterophylla Rhizosphere	MAHKELKYNEEARAALAHTLTLHPDLSSAHVVNDTVFANPADRARFLEGLRKAGLEK*
Ga0081539_102455401	3300005985	Tabebuia Heterophylla Rhizosphere	EEAQVALAHTLELHPDFSLDHVEKNTIYADPADRQRFLEGLRRAGLKG*
Ga0081539_104920652	3300005985	Tabebuia Heterophylla Rhizosphere	EAHAALKHTLTLQPELSLDHVEKNTVYADPADRARFLEGLRKAGLKS*
Ga0066652_1014975931	3300006046	Soil	LGMLGRIDEAKEALARTRVLHPDLSLAHVEKDTVYADPADRARFLQGLRSAGLQD*
Ga0075363_1004534801	3300006048	Populus Endosphere	LGKLDEAREALAHARMLQPELSSAQVESSTVYANSAERARFIEGFRKAGLSD*
Ga0075432_100838653	3300006058	Populus Rhizosphere	PDLSSAHVANNTVFANPDDRARFLLGLQKAGLRD*
Ga0070716_1009482692	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LQPDLSSAHVEINTVYANPEDRARFLEGLRKTGLKN*
Ga0070712_1007728992	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GKLDEAKEALAHARTLQPDLASSQVESNTVYANPAERSRFIEGLRQAGLRH*
Ga0075367_104439481	3300006178	Populus Endosphere	LGKEEEAGAALKHTLTLQPELSLDHVEKNTVYADPADRARFLEGLRRAGLKS*
Ga0097621_1005775383	3300006237	Miscanthus Rhizosphere	ALQPDLKMSHVEHNTVYADPADRARFLEGLRKAGLQS*
Ga0068871_1003651031	3300006358	Miscanthus Rhizosphere	LGLLGRVDEAKDALAHTLTLQPDLSSAHVEINTVYANPEDRSRFLEGLRKAGLKN*
Ga0074050_117188651	3300006577	Soil	LQPDLSSAHVEINTVYANPEDRARFLEGLRKAGLKN*
Ga0074064_110988781	3300006603	Soil	EAREALARTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAGLKN*
Ga0075428_1000190198	3300006844	Populus Rhizosphere	AQEALARTLALQPDLSSAHVANNTVFANPDDRARFLLGLQRAGLKD*
Ga0075429_1015684371	3300006880	Populus Rhizosphere	QEALARTLALQPDLSSAHVANNTVFANPDDRARFLLGLQRAGLKD*
Ga0075419_101254744	3300006969	Populus Rhizosphere	LARTLALQPDLSSAHVANNTVFANPDDRARFLLGLQKAGLRD*
Ga0075419_106349963	3300006969	Populus Rhizosphere	EAQEALARTLALQPDLSSAHVANNTVFANPDDRARFLLGLQRAGLKD*
Ga0111539_111966182	3300009094	Populus Rhizosphere	PDLSSAHVANNTVFANPDDRARFLLGLQRAGLKD*
Ga0075418_1002451514	3300009100	Populus Rhizosphere	EALARTLALQPDLSSAHVANNTVFANPDDRARFLLGLQKAGLRD*
Ga0075418_122465272	3300009100	Populus Rhizosphere	SLGLLGKTDEANAALAQTLMLQPDLSLDHVESNTIYADPADRARFREGLLRAGLTR*
Ga0105247_101977491	3300009101	Switchgrass Rhizosphere	TASLGMLGKLDEAREALAHAQMLQPGLSSAQVESNTVYANPTERARFIEGLRQAGLRH*
Ga0105247_102444152	3300009101	Switchgrass Rhizosphere	AALAHTLTLQPDLSSAHVEINTVYANPEDRARFLEGLRKAGLKN*
Ga0105247_115517301	3300009101	Switchgrass Rhizosphere	RTLELSPDFSLDHVEKNTIYADPADRARFLEGLRKAGLGG*
Ga0105243_129941431	3300009148	Miscanthus Rhizosphere	LEAALAQTLTLQPDLSLDHVESNTIYADPADRARFREGLLKAGLNC*
Ga0111538_103570311	3300009156	Populus Rhizosphere	EAQEALARTLALQPDLSSAHVANNTVFANPDDRARFLLGLQKAGLRD*
Ga0105241_119757442	3300009174	Corn Rhizosphere	LLGRQDEAREALERTLALQPDLKMSHVEHNTVYADPADRARFLEGLRKAGLQS*
Ga0105249_102180511	3300009553	Switchgrass Rhizosphere	ALAHTLTLQPDLSSAHVEINTVYANPEDRARFLEGLRKAGLKN*
Ga0126307_114479201	3300009789	Serpentine Soil	AKVALAQTLRLQPDLSLDHVENNTIYADPADRARFREGLRKAGLER*
Ga0126380_106058871	3300010043	Tropical Forest Soil	HTLTMQPDLSSAHVADNTVYADPADRSRFLEGLRKAGLKD*
Ga0126380_119576191	3300010043	Tropical Forest Soil	QPDLSEAHVTNDTVFADPADRSRFLEGLRKAGLQR*
Ga0126372_114528511	3300010360	Tropical Forest Soil	LAHTLTLQPDLSSAHVEANTVFADPADRSRFLLGLQKAGLQR*
Ga0126377_102337091	3300010362	Tropical Forest Soil	ALQPDLSSAHVTHDTVFVNPNDRARFLQGLLNAGLKQ*
Ga0126377_108183242	3300010362	Tropical Forest Soil	EAKEALARTLTLQPDLSSAHVANNTVFANPDDRARFLLGLQKAGLKD*
Ga0134126_107499812	3300010396	Terrestrial Soil	AHTLTLQPDLAGAHVEMNTVYANQQDRSRFLEGLRKAGLKN*
Ga0150985_1024423712	3300012212	Avena Fatua Rhizosphere	LTVSLALLGKIEEAKAALAQTLVLQPDLSLAHVENNNIYADPADRERFREGLIKAGLTR*
Ga0137370_106685161	3300012285	Vadose Zone Soil	AREALAHTLTMPPDLSSAHVTNDTVYADPADRARFLEGLRKAGLKG*
Ga0157339_10357392	3300012505	Arabidopsis Rhizosphere	AHTLTLQPDLSSAHVEINTVYANPEDRARFLEGLRKAGLKN*
Ga0157310_103409692	3300012916	Soil	LLTVSLALLGKTEEAKAALTQTLTLQPDLSLAHVENNNIYAEPADRERFREGLLKAGLTR
Ga0126375_110005482	3300012948	Tropical Forest Soil	LAHTLTMQPDLSSAHVADNTVYADPADRSRFLEGLRKAGLKD*
Ga0164300_101997931	3300012951	Soil	LQPDLSSDHVVNNTVYVNSSDRSRFLLGLQKAGLKH*
Ga0164300_102157641	3300012951	Soil	TDLSSAHVENNTVYANPADRSRFLEGLRKAGLKN*
Ga0164299_104628131	3300012958	Soil	SESLAHTLTLQPDLSSDHVANNTVYANASDRSRFLSGLQKAGLRD*
Ga0164301_102688623	3300012960	Soil	ALQPDLSLSHVESNTIYADPADRARFREGRVKAGMTCH*
Ga0164307_106879102	3300012987	Soil	ESLMQTLTLQPDLSSDHVVNNTVYVNSSDRSRFLLGLQKAGLKH*
Ga0164305_103843392	3300012989	Soil	EALAHTLTLQPDLSSAHVENNTVYANPADRSRFLEGLRKAGLKN*
Ga0157369_113125922	3300013105	Corn Rhizosphere	LGLLGRVDEAKDALAHTLTLQPDLSSAHVEINTVYANPEDRARFLEGLRKAGLKN*
Ga0157374_107422281	3300013296	Miscanthus Rhizosphere	LALQPDLSSAHVTHDTVFVNPKDRARFLQGLLNAGLKN*
Ga0157376_109040702	3300014969	Miscanthus Rhizosphere	PDLSSAHVTHDTVFVNPNDRERFLQGLRNAGLKN*
Ga0173483_100420871	3300015077	Soil	AAKVEEANAALEQTLMLQPDLSLDHVESNNIYADPAERARFREGLVKAGMTCH*
Ga0173483_107136792	3300015077	Soil	IDEAKDALAHTLTLQPDLASAHVEMNTVYANPQERSRFLEGLRKAGLKN*
Ga0173483_109275782	3300015077	Soil	GREDEARAALARTLALQPDLSIEHVETNTVYANAADRARFRDGLRKAGLEN*
Ga0132258_106042826	3300015371	Arabidopsis Rhizosphere	GRIDEAKAALAHTLELSPDFSLDHVEKNTVYADPADRARFLEGLRRAGLKS*
Ga0132255_1035005852	3300015374	Arabidopsis Rhizosphere	RAGTLTLQPDLSISHVEINAVYADPADRLRFREGLRKAGLEK*
Ga0182032_101306701	3300016357	Soil	MQPDLSSAHVADNTVYADPADRSRFLEGLRKAGLKD
Ga0182037_107067983	3300016404	Soil	HTLTMQPDLSSAHVADNTVYADPADRSRFLEGLRKAGLKD
Ga0187767_100140231	3300017999	Tropical Peatland	RLDEAKAALEQTRKLQPDLSSAHVVNNTVYVNAADRNRFLEGLRKAGLKD
Ga0184611_12214502	3300018067	Groundwater Sediment	GKIDDAKEALLRTLALQPDFSSAHVANNTVFAKPDDRARFLLGLRRAGLKD
Ga0184640_102761451	3300018074	Groundwater Sediment	AALARTLALQPDLSIDHVETNTVYANAADRARFRDGLRKAGLEN
Ga0066662_104373961	3300018468	Grasslands Soil	LAQTLTLQPDLALAHVENNNIYADPTDRERFREGLLKAGLNR
Ga0190270_100292531	3300018469	Soil	LTLQPDLSGDHVEKNTVFANPSDRSRFLLGLRNAGLKG
Ga0190270_130602252	3300018469	Soil	AKQALAHTLTLQPDLSGDHVEKNTVFANPSDRSRFLLGLRNAGLKG
Ga0190274_100593101	3300018476	Soil	EAKAALAQTLKLQPDLSLNHVESNTIYADPADRARFREGLLKAGLDR
Ga0190271_126365052	3300018481	Soil	WRLLTVSLGLLGNVDEAKAALAQTLKLQPDLSLGHVESNTIYADPADRARFREGLLKAGLDR
Ga0190273_107056193	3300018920	Soil	ALAHTLTLQPDLSGDHVEKNTVFANPSDRSRFLLGLRNAGLKG
Ga0173479_106083761	3300019362	Soil	RLDEAREALAHTLTLQPDLASAHVENNTVYANPADRSRFLEGLRKAGLRN
Ga0193727_10690802	3300019886	Soil	RIDEAEEALAHTLTLQPDLSGAHVVNDTVFANPADRSRFLEGLRKAGLKA
Ga0193697_11164312	3300020005	Soil	AHTLKLQPDLSIDHVEKNTVYADPADRSRFLEGLRKAGLKG
Ga0247800_10697112	3300023263	Soil	DDAREALARAQMLQPDLSSAQVESNTVYANPAERSRFIEGLRQAGLRH
Ga0247784_11156791	3300023270	Plant Litter	RTLALQPDLSIEHVETNTVYANAADRARFRDGLRKAGLEN
Ga0207688_103889921	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	HTLALSPDFSLDHVEKNTVYADPADRARFLEGLRRAGLKS
Ga0207645_108279421	3300025907	Miscanthus Rhizosphere	DEAKAALAHTLTLQPDLSGDHVETNTVFADPADRARFLEGLRRAGLKS
Ga0207650_105071822	3300025925	Switchgrass Rhizosphere	DEAREALARTLALQPDLSSAHVTHDTVFVNPKDRARFLQGLLNAGLKN
Ga0207659_113164701	3300025926	Miscanthus Rhizosphere	EAGTALVQTLTLQPDLSLDHVESNNIYADPADRARFREGLLRAGLNR
Ga0207664_110913582	3300025929	Agricultural Soil	MTVSLGLLGRVEEAREALAHTLTMQPDLSSAHVTNDTVYADPADRARFLEGLRKAG
Ga0207670_103567452	3300025936	Switchgrass Rhizosphere	AKAALAHTLTLQPDLSSAHVEINTVYANPEDRARFLEGLRKAGLKN
Ga0207691_101736254	3300025940	Miscanthus Rhizosphere	IDEAKAALARTLELSPDFSLDHVEKNTVYADPADRARFLEGLRKAGLGG
Ga0207679_104640421	3300025945	Corn Rhizosphere	EAREALARTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAGLKN
Ga0207679_108539662	3300025945	Corn Rhizosphere	LALQPDLSIEHVETNTVYANAADRARFRDGLRKAGLEN
Ga0207667_117092231	3300025949	Corn Rhizosphere	GKLDEAREALAHAQMLQPDISSAQVESNTVYANPAERCRLIEGLRKAGLRH
Ga0210068_10357821	3300025953	Natural And Restored Wetlands	QRHDRAQALAHARSLQPDLSLNHVEKNTVYVDPADRARFLQGLRNAGLQD
Ga0207668_108828681	3300025972	Switchgrass Rhizosphere	KAALARTLELSPDFSLDHVEKNTIYADPADRARFLEGLRKAGLGG
Ga0207668_111243322	3300025972	Switchgrass Rhizosphere	RTLALQPDLSSAHVTHDTVFVNPNDRERFLQGLLNAGLKN
Ga0207708_108069621	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	IDEAKAALARTLELSPDFSLDHVEKNTIYADPADRARFLEGLRKAGLGG
Ga0207702_105785712	3300026078	Corn Rhizosphere	KAALTQTLTLQPDLSLAHVENNNIYADPADRERFRGGLLKAGLTR
Ga0207676_107560113	3300026095	Switchgrass Rhizosphere	LALQPDLSSDHVVNNTVYVNSSDRSRFLLGLQKAGLKH
Ga0257146_10387361	3300026374	Soil	LQPDLSSAHVEINTVYANPEDRSRFLEGLRKAGLKN
Ga0207982_10019982	3300026886	Soil	GLLGRVDEAKDALAHTLTLQPDLSSAHVEINTVYANPEDRARFLEGLRKAGLKN
Ga0208890_10427112	3300027523	Soil	VDEAKAALAHTLTLQPDLSSAHVEINTVYANPEDRARFLEGLRKAGLKN
Ga0207428_102871951	3300027907	Populus Rhizosphere	ALAHTLTLQPDLSSAHVEINTVYANPEDRARFLEGLRKAGLKN
Ga0209382_100495781	3300027909	Populus Rhizosphere	RTLALQPDLSSAHVANNTVFANPDDRARFLLGLQRAGLKD
Ga0209382_112611802	3300027909	Populus Rhizosphere	ALVRTLTMQPDLSSAHVANDTVYSDPDVRARFLEGLRKAGLQS
Ga0209583_101141923	3300027910	Watersheds	LTLQPDLSSDHVANNTVYTNESDRSRFLLGLQKAGLRQ
Ga0307321_10706542	3300028704	Soil	REDEARAALARTLALQPDLSIDHVETNTVYANAADRARFRDGLRKAGLEN
Ga0307295_100426412	3300028708	Soil	EAGEALSRTLALQPDLSSAHVVHDTVFVNPNDRARFLLGLQNAGLKD
Ga0307293_100768781	3300028711	Soil	SLGMLGKLDEAREALAHAQMLQPDLSSAHVESNTVYANAAERSRFIEGLRKAGLRH
Ga0307285_101400012	3300028712	Soil	LALLGREDEARAALARTLALQPDLSIDHVETNTVYANAADRARFRDGLRKAGLEN
Ga0307280_100198051	3300028768	Soil	LARTLALQPDLSSAHVVHDTVFVNPNDRARFLLGLQNAGLKD
Ga0307306_100355512	3300028782	Soil	IDEAKEALAHTLTLQPDLSAAHVANDTVFANPADRSRFLEGLRKAGLKA
Ga0307290_100514891	3300028791	Soil	KEALAHTLTLQPDLSAAHVANDTVFANPADRSRFLEGLRKAGLKA
Ga0307287_101860431	3300028796	Soil	KLDEAREALAHAQMLQPDLSSAHVESNTVYANAAERSRFIEGLRKAGLRH
Ga0307287_103636321	3300028796	Soil	AREALSSTLALQPDFSSAHVADNTVFANSDDRARFLLGLRRAGLKD
Ga0247825_107785611	3300028812	Soil	GLLDRIDEAKQALAHTLTLQPDLSSAHVEKNTVFAELSDRNRFLLGLRKAGIKE
Ga0307302_106136022	3300028814	Soil	ELVHTLRLQPDLSSAHVEHDTVYTDPADRSRFLLGLRKAGLMN
Ga0308196_10495612	3300030989	Soil	DEAEEALAHTLTLQPDLSGAHVVNDTVFANPADRSRFLEGLRKAGLKN
Ga0307500_100107881	3300031198	Soil	GKIDEARESLVQTLTLQPDLSSDHVVNNTVYVNSSDRSRFLLGLQKAGLKH
Ga0307505_106522582	3300031455	Soil	RESLMQTLTLQPDLSSDHVANNTVYVNSSDRSRFLLGLQKAGLKH
Ga0170818_1111954001	3300031474	Forest Soil	DEAEEALAHTLTLQPDLSGAHVVNDTVFANPADRSRFLEGLRKAGLKA
Ga0307468_1012054351	3300031740	Hardwood Forest Soil	HAGAWRLLTVSLALLGKVEEAKAALVQTLILQPDLSLDHVENNNIYAEPADRARFREGLVKAGLNR
Ga0318521_100881662	3300031770	Soil	RTLALQPDLSSAHVTNDTVFVNSNDRARFLQGLLNAGLKN
Ga0310892_107105192	3300031858	Soil	ELSPDFSLDHVEKNTIYADPADRARFLEGLRKAGLGG
Ga0310897_104256682	3300032003	Soil	ALAHTLTLQPDLSLSHVEKNTVFANPSDRSRFLLGLQRAGLKD
Ga0307470_102529353	3300032174	Hardwood Forest Soil	ALVRTLTMQPDLSNAHVENDTVYSDPDVRARFLEGLRKAGLQS
Ga0326726_125001231	3300033433	Peat Soil	TLALQPDLSSDHVANNTVYADASDRFRFLLGLQKAGLRD
Ga0326723_0184148_754_921	3300034090	Peat Soil	LGLLGKIDEAKEALAHALTLQPDLSSAHVENNTVFVNPADRARFLEGLRKAGLKD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F044676

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences