NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F044047

Metagenome / Metatranscriptome Family F044047

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F044047
Family Type Metagenome / Metatranscriptome
Number of Sequences 155
Average Sequence Length 46 residues
Representative Sequence VNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRSSNWDGERKT
Number of Associated Samples 131
Number of Associated Scaffolds 155

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.65 %
% of genes near scaffold ends (potentially truncated) 97.42 %
% of genes from short scaffolds (< 2000 bps) 83.23 %
Associated GOLD sequencing projects 119
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (76.129 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland
(14.194 % of family members)
Environment Ontology (ENVO) Unclassified
(45.806 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(46.452 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 33.33%    β-sheet: 0.00%    Coil/Unstructured: 66.67%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 155 Family Scaffolds
PF00137ATP-synt_C 54.84
PF00119ATP-synt_A 23.87
PF03899ATP-synt_I 6.45
PF09527ATPase_gene1 1.94
PF00361Proton_antipo_M 1.29
PF11066DUF2867 0.65
PF13620CarboxypepD_reg 0.65
PF14534DUF4440 0.65

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 155 Family Scaffolds
COG0636FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit KEnergy production and conversion [C] 54.84
COG0356FoF1-type ATP synthase, membrane subunit aEnergy production and conversion [C] 23.87
COG3312FoF1-type ATP synthase accessory protein AtpIEnergy production and conversion [C] 6.45

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms76.13 %
UnclassifiedrootN/A23.87 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2189573000|GPBTN7E02FZKMMAll Organisms → cellular organisms → Bacteria508Open in IMG/M
3300000567|JGI12270J11330_10264586All Organisms → cellular organisms → Bacteria548Open in IMG/M
3300001356|JGI12269J14319_10305929Not Available572Open in IMG/M
3300001593|JGI12635J15846_10385065All Organisms → cellular organisms → Bacteria850Open in IMG/M
3300001593|JGI12635J15846_10455813All Organisms → cellular organisms → Bacteria761Open in IMG/M
3300002907|JGI25613J43889_10125711All Organisms → cellular organisms → Bacteria652Open in IMG/M
3300002917|JGI25616J43925_10036452All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2163Open in IMG/M
3300004082|Ga0062384_101391808All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300004091|Ga0062387_100020707All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter2712Open in IMG/M
3300004092|Ga0062389_104992036All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300004152|Ga0062386_101795946All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300004970|Ga0072320_1296761All Organisms → cellular organisms → Bacteria628Open in IMG/M
3300005445|Ga0070708_100124962All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter2377Open in IMG/M
3300005445|Ga0070708_101804714All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300005468|Ga0070707_100617251All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1047Open in IMG/M
3300005471|Ga0070698_102082373Not Available521Open in IMG/M
3300005518|Ga0070699_100943571All Organisms → cellular organisms → Bacteria791Open in IMG/M
3300005555|Ga0066692_10140438All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1475Open in IMG/M
3300005591|Ga0070761_11036015All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300005712|Ga0070764_10784354All Organisms → cellular organisms → Bacteria591Open in IMG/M
3300005995|Ga0066790_10245280All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae764Open in IMG/M
3300006052|Ga0075029_100453538All Organisms → cellular organisms → Bacteria841Open in IMG/M
3300006086|Ga0075019_10067888Not Available2022Open in IMG/M
3300006102|Ga0075015_100135383All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1270Open in IMG/M
3300006102|Ga0075015_100706395All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300006102|Ga0075015_101027545All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300006162|Ga0075030_101490297All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300006176|Ga0070765_100319422Not Available1439Open in IMG/M
3300006954|Ga0079219_12164425Not Available534Open in IMG/M
3300009519|Ga0116108_1017094All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2552Open in IMG/M
3300009519|Ga0116108_1250590Not Available517Open in IMG/M
3300009522|Ga0116218_1032134All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2361Open in IMG/M
3300009523|Ga0116221_1062755All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1698Open in IMG/M
3300009547|Ga0116136_1028299Not Available1738Open in IMG/M
3300009628|Ga0116125_1135798Not Available675Open in IMG/M
3300009632|Ga0116102_1183867All Organisms → cellular organisms → Bacteria565Open in IMG/M
3300009635|Ga0116117_1001834All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5641Open in IMG/M
3300009636|Ga0116112_1057979All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1133Open in IMG/M
3300009637|Ga0116118_1004020All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae6556Open in IMG/M
3300009637|Ga0116118_1014774All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2989Open in IMG/M
3300009637|Ga0116118_1088433All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1051Open in IMG/M
3300009637|Ga0116118_1192103All Organisms → cellular organisms → Bacteria643Open in IMG/M
3300009639|Ga0116122_1014698All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2897Open in IMG/M
3300009639|Ga0116122_1016096Not Available2746Open in IMG/M
3300009641|Ga0116120_1129869Not Available819Open in IMG/M
3300009644|Ga0116121_1292945Not Available524Open in IMG/M
3300009645|Ga0116106_1260063Not Available552Open in IMG/M
3300009683|Ga0116224_10237252All Organisms → cellular organisms → Bacteria871Open in IMG/M
3300009759|Ga0116101_1000228All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5174Open in IMG/M
3300009824|Ga0116219_10605310All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300009839|Ga0116223_10116357Not Available1681Open in IMG/M
3300009839|Ga0116223_10740029Not Available563Open in IMG/M
3300010343|Ga0074044_10621926All Organisms → cellular organisms → Bacteria705Open in IMG/M
3300010343|Ga0074044_10736104Not Available644Open in IMG/M
3300010379|Ga0136449_100416770Not Available2374Open in IMG/M
3300010880|Ga0126350_10413232All Organisms → cellular organisms → Bacteria562Open in IMG/M
3300011054|Ga0138523_1056348All Organisms → cellular organisms → Bacteria924Open in IMG/M
3300011269|Ga0137392_10705734Not Available835Open in IMG/M
3300011270|Ga0137391_10285831Not Available1424Open in IMG/M
3300011271|Ga0137393_10985909All Organisms → cellular organisms → Bacteria718Open in IMG/M
3300011271|Ga0137393_11756129Not Available509Open in IMG/M
3300012203|Ga0137399_10290174All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1349Open in IMG/M
3300012203|Ga0137399_11502679Not Available561Open in IMG/M
3300012206|Ga0137380_10729668All Organisms → cellular organisms → Bacteria859Open in IMG/M
3300012359|Ga0137385_11195322All Organisms → cellular organisms → Bacteria622Open in IMG/M
3300012363|Ga0137390_10855465Not Available866Open in IMG/M
3300012917|Ga0137395_10313184Not Available1114Open in IMG/M
3300012922|Ga0137394_10319655All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1326Open in IMG/M
3300012924|Ga0137413_10697539All Organisms → cellular organisms → Bacteria → Acidobacteria770Open in IMG/M
3300012930|Ga0137407_12432589All Organisms → cellular organisms → Bacteria501Open in IMG/M
3300014158|Ga0181521_10253085All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae928Open in IMG/M
3300014159|Ga0181530_10556621All Organisms → cellular organisms → Bacteria565Open in IMG/M
3300014159|Ga0181530_10575911All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300014169|Ga0181531_10449165All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345794Open in IMG/M
3300014498|Ga0182019_10751911All Organisms → cellular organisms → Bacteria694Open in IMG/M
3300014657|Ga0181522_10105814All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1627Open in IMG/M
3300017925|Ga0187856_1034845All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2348Open in IMG/M
3300017925|Ga0187856_1326546All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300017935|Ga0187848_10126922All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1140Open in IMG/M
3300017941|Ga0187850_10123619All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1234Open in IMG/M
3300017941|Ga0187850_10325783All Organisms → cellular organisms → Bacteria678Open in IMG/M
3300017955|Ga0187817_10014492All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis4592Open in IMG/M
3300018001|Ga0187815_10238729Not Available769Open in IMG/M
3300018008|Ga0187888_1187882All Organisms → cellular organisms → Bacteria826Open in IMG/M
3300018017|Ga0187872_10419548All Organisms → cellular organisms → Bacteria564Open in IMG/M
3300018023|Ga0187889_10520012Not Available506Open in IMG/M
3300018024|Ga0187881_10037705All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2444Open in IMG/M
3300018033|Ga0187867_10688402All Organisms → cellular organisms → Bacteria557Open in IMG/M
3300018034|Ga0187863_10586406All Organisms → cellular organisms → Bacteria627Open in IMG/M
3300018040|Ga0187862_10467620Not Available763Open in IMG/M
3300018042|Ga0187871_10256322All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis971Open in IMG/M
3300018042|Ga0187871_10554907All Organisms → cellular organisms → Bacteria637Open in IMG/M
3300018047|Ga0187859_10025758All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis3208Open in IMG/M
3300018047|Ga0187859_10777399All Organisms → cellular organisms → Bacteria548Open in IMG/M
3300018062|Ga0187784_11543591All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300018090|Ga0187770_10695863All Organisms → cellular organisms → Bacteria811Open in IMG/M
3300019275|Ga0187798_1188214All Organisms → cellular organisms → Bacteria937Open in IMG/M
3300019278|Ga0187800_1351544All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1072Open in IMG/M
3300019284|Ga0187797_1409230All Organisms → cellular organisms → Bacteria971Open in IMG/M
3300019785|Ga0182022_1136779All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2060Open in IMG/M
3300019786|Ga0182025_1043259All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae887Open in IMG/M
3300019787|Ga0182031_1369438All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis2831Open in IMG/M
3300020199|Ga0179592_10326243Not Available679Open in IMG/M
3300020579|Ga0210407_10020748All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis4881Open in IMG/M
3300021181|Ga0210388_10249231All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1558Open in IMG/M
3300021406|Ga0210386_11009333All Organisms → cellular organisms → Bacteria709Open in IMG/M
3300021478|Ga0210402_10286491Not Available1524Open in IMG/M
3300021860|Ga0213851_1101719All Organisms → cellular organisms → Bacteria541Open in IMG/M
3300023090|Ga0224558_1193598All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300025406|Ga0208035_1066806All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300025432|Ga0208821_1012416Not Available2053Open in IMG/M
3300025496|Ga0208191_1002897All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis6921Open in IMG/M
3300025576|Ga0208820_1003022All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis7906Open in IMG/M
3300025612|Ga0208691_1131908All Organisms → cellular organisms → Bacteria563Open in IMG/M
3300027562|Ga0209735_1005634All Organisms → cellular organisms → Bacteria2317Open in IMG/M
3300027562|Ga0209735_1020610Not Available1346Open in IMG/M
3300027568|Ga0208042_1053605All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis1031Open in IMG/M
3300027587|Ga0209220_1086725Not Available825Open in IMG/M
3300027609|Ga0209221_1111171All Organisms → cellular organisms → Bacteria700Open in IMG/M
3300027645|Ga0209117_1160050Not Available584Open in IMG/M
3300027729|Ga0209248_10046312All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1339Open in IMG/M
3300027745|Ga0209908_10015491All Organisms → cellular organisms → Bacteria1372Open in IMG/M
3300027767|Ga0209655_10117882All Organisms → cellular organisms → Bacteria883Open in IMG/M
3300027767|Ga0209655_10300408All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300027768|Ga0209772_10139762All Organisms → cellular organisms → Bacteria757Open in IMG/M
3300027825|Ga0209039_10312962All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300027905|Ga0209415_10574759All Organisms → cellular organisms → Bacteria843Open in IMG/M
3300027905|Ga0209415_10848276Not Available629Open in IMG/M
3300027905|Ga0209415_11127858All Organisms → cellular organisms → Bacteria507Open in IMG/M
3300027910|Ga0209583_10609322All Organisms → cellular organisms → Bacteria557Open in IMG/M
3300027911|Ga0209698_10884439Not Available671Open in IMG/M
3300028047|Ga0209526_10231452Not Available1270Open in IMG/M
3300028740|Ga0302294_10005553All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3123Open in IMG/M
3300028759|Ga0302224_10486085All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300028785|Ga0302201_10099214All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis1315Open in IMG/M
3300028800|Ga0265338_10854629All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300028866|Ga0302278_10200882All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium991Open in IMG/M
3300029913|Ga0311362_10089608All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis4176Open in IMG/M
3300029952|Ga0311346_10856525All Organisms → cellular organisms → Bacteria757Open in IMG/M
3300030492|Ga0302212_1096474Not Available792Open in IMG/M
3300030617|Ga0311356_12022590All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300030659|Ga0316363_10064938Not Available1693Open in IMG/M
3300030659|Ga0316363_10379101All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300031028|Ga0302180_10207970All Organisms → cellular organisms → Bacteria1049Open in IMG/M
3300031242|Ga0265329_10211298All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium640Open in IMG/M
3300031250|Ga0265331_10561547All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300031718|Ga0307474_10912393All Organisms → cellular organisms → Bacteria695Open in IMG/M
3300031918|Ga0311367_12002397All Organisms → cellular organisms → Bacteria559Open in IMG/M
3300031962|Ga0307479_10542890Not Available1145Open in IMG/M
3300032001|Ga0306922_11409292All Organisms → cellular organisms → Bacteria700Open in IMG/M
3300032160|Ga0311301_10857793All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1233Open in IMG/M
3300032160|Ga0311301_12453969All Organisms → cellular organisms → Bacteria585Open in IMG/M
3300033405|Ga0326727_10607773All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter907Open in IMG/M
3300033561|Ga0371490_1079988All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae900Open in IMG/M
3300033803|Ga0314862_0054389All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter870Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland14.19%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil12.26%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland10.32%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil9.03%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil5.81%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds5.16%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil5.16%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog3.23%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.23%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.58%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland2.58%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog2.58%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.94%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen1.94%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.94%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere1.94%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.29%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.29%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.29%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.29%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.29%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen1.29%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil1.29%
WatershedsEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds0.65%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.65%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.65%
Thawing PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost0.65%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog0.65%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.65%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.65%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.65%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil0.65%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2189573000Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)EnvironmentalOpen in IMG/M
3300000567Peat soil microbial communities from Weissenstadt, Germany - SII-2010EnvironmentalOpen in IMG/M
3300001356Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002907Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cmEnvironmentalOpen in IMG/M
3300002917Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cmEnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300004970Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005995Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006086Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009519Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150EnvironmentalOpen in IMG/M
3300009522Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaGEnvironmentalOpen in IMG/M
3300009523Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaGEnvironmentalOpen in IMG/M
3300009547Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40EnvironmentalOpen in IMG/M
3300009628Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10EnvironmentalOpen in IMG/M
3300009632Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40EnvironmentalOpen in IMG/M
3300009635Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10EnvironmentalOpen in IMG/M
3300009636Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150EnvironmentalOpen in IMG/M
3300009637Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40EnvironmentalOpen in IMG/M
3300009639Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40EnvironmentalOpen in IMG/M
3300009641Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150EnvironmentalOpen in IMG/M
3300009644Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10EnvironmentalOpen in IMG/M
3300009645Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40EnvironmentalOpen in IMG/M
3300009683Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaGEnvironmentalOpen in IMG/M
3300009759Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10EnvironmentalOpen in IMG/M
3300009824Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaGEnvironmentalOpen in IMG/M
3300009839Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaGEnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010880Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011054Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 1 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014158Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaGEnvironmentalOpen in IMG/M
3300014159Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaGEnvironmentalOpen in IMG/M
3300014169Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaGEnvironmentalOpen in IMG/M
3300014498Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaGEnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300017925Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40EnvironmentalOpen in IMG/M
3300017935Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40EnvironmentalOpen in IMG/M
3300017941Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300018001Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5EnvironmentalOpen in IMG/M
3300018008Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40EnvironmentalOpen in IMG/M
3300018017Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40EnvironmentalOpen in IMG/M
3300018023Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100EnvironmentalOpen in IMG/M
3300018024Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100EnvironmentalOpen in IMG/M
3300018033Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10EnvironmentalOpen in IMG/M
3300018034Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10EnvironmentalOpen in IMG/M
3300018040Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150EnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300018047Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10EnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018090Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300019275Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019278Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019284Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019785Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300019786Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300019787Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021860Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023090Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24EnvironmentalOpen in IMG/M
3300025406Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025432Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40 (SPAdes)EnvironmentalOpen in IMG/M
3300025496Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40 (SPAdes)EnvironmentalOpen in IMG/M
3300025576Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40 (SPAdes)EnvironmentalOpen in IMG/M
3300025612Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027562Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027568Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027587Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027609Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027645Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027729Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027745Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2MEnvironmentalOpen in IMG/M
3300027767Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027768Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027825Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028740Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N2_3EnvironmentalOpen in IMG/M
3300028759Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1EnvironmentalOpen in IMG/M
3300028785Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_2EnvironmentalOpen in IMG/M
3300028800Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaGHost-AssociatedOpen in IMG/M
3300028866Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2EnvironmentalOpen in IMG/M
3300029913III_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029952II_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300030492Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N1_2EnvironmentalOpen in IMG/M
3300030617II_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300030659Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)EnvironmentalOpen in IMG/M
3300031028Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2EnvironmentalOpen in IMG/M
3300031242Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaGHost-AssociatedOpen in IMG/M
3300031250Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaGHost-AssociatedOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031918III_Fen_N3 coassemblyEnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300033405Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MYEnvironmentalOpen in IMG/M
3300033561Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB28FN SIP fractionEnvironmentalOpen in IMG/M
3300033803Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_10EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
N55_091638402189573000Grass SoilSENPRRGSAARARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRAANWDGERKT
JGI12270J11330_1026458613300000567Peatlands SoilRVNEIGFEFVSMDLDSRYRLRRILVEALQRVPDNRSAEWDGARKE*
JGI12269J14319_1030592923300001356Peatlands SoilRARVNEIGFEFVSMDLDSRFRLRRVLVEALQKVPENRASNWDGERTT*
JGI12635J15846_1038506513300001593Forest SoilLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPENRSATWDGERKV*
JGI12635J15846_1045581313300001593Forest SoilGEVLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPENRSATWDGERKV*
JGI25613J43889_1012571123300002907Grasslands SoilRGEVLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNHASNWDGERKT*
JGI25616J43925_1003645243300002917Grasslands SoilIGFEFVSMDLDSRYRLRRVLVEALQKVPDNHASNWDGERKT*
Ga0062384_10139180813300004082Bog Forest SoilGEVLLRRARVNEIGFEFVGMDLDSRYRLRRVLVEAAQKIPDDAKDWDGERKI*
Ga0062387_10002070713300004091Bog Forest SoilARVNEIGFEFVSMDLDSRYRLRRILVEALQKVPDNRANNWDGERKAT*
Ga0062389_10499203613300004092Bog Forest SoilRRARVNEIGFEFVSMDLDSRYRLRRILVEALQKVPDNHANNWDGERKS*
Ga0062386_10179594613300004152Bog Forest SoilRARVNEIGFEFVNMDLDSRYRLRRVLVEALQKTPDRRGSDWDGERKVLS*
Ga0072320_129676113300004970Peatlands SoilNEIGFEFVSMDLDSRYRLRRVLVEALQKVPENRSTEWDGGRKK*
Ga0070708_10012496213300005445Corn, Switchgrass And Miscanthus RhizosphereEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRSSNWDGERKT*
Ga0070708_10180471413300005445Corn, Switchgrass And Miscanthus RhizosphereLLRRARVNEIGFEFVSMDLDSRYRLRRILVEASEKAPENRAGTWDGERKT*
Ga0070707_10061725113300005468Corn, Switchgrass And Miscanthus RhizosphereEIGFEFVSMDLDSRYRLRRILVEASEKAPENRAGAWDGERKT*
Ga0070698_10208237323300005471Corn, Switchgrass And Miscanthus RhizosphereEFVSMDLDSRYRLRRALVEALVKNPENRAAEWDGERKTDRKG*
Ga0070699_10094357113300005518Corn, Switchgrass And Miscanthus RhizosphereRVNEIGFEFVSMDLDSRYRLRRILVEASEKAPENRAGTWDGERKT*
Ga0066692_1014043813300005555SoilSMDLDSRYRLRRVLVEALQKVPDNRSSNWDGERKT*
Ga0070761_1103601513300005591SoilNEIGFEFVSMDLDSRYRLRRILVEALQKLPDNRVANWDGERKV*
Ga0070764_1078435423300005712SoilEIGFEFVSMDLDSRYRLRRILVEALQKVPDNRAANWDGERKV*
Ga0066790_1024528033300005995SoilGFEFVSMDLDSRYRLRRVLVEALQRVPDTRSTTWDGERG*
Ga0075029_10045353823300006052WatershedsRGQVLLRRARVNEIGFEFVNMDLDSRYRLRRVLVEALTKAPENRSPDWDGARKS*
Ga0075019_1006788843300006086WatershedsARVNEIGFEFVSMDLDSRHRLRRVLMEALEKAPANRSDTWDGERKG*
Ga0075015_10013538313300006102WatershedsRRARVNEIGFEFVSMDLDSRHRLRIFLMQAVAKVPANLSDTWDGERKA*
Ga0075015_10070639513300006102WatershedsLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQRVPDNRSATWDGERNT*
Ga0075015_10102754523300006102WatershedsRRARVNEIGFEFVSMDLDSRHRLRRFLMQAVEKAPVNLSDTWDGERKA*
Ga0075030_10149029713300006162WatershedsLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPENRSATWDGDRKL*
Ga0070765_10031942233300006176SoilRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRSSNWDGERKT*
Ga0079219_1216442513300006954Agricultural SoilNMDLDSRYRLRRVLAEAISRAPEGRSTEWNGERKT*
Ga0116108_101709453300009519PeatlandLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKLPDNRSADWDGQRKT*
Ga0116108_125059013300009519PeatlandMDLDSRYRLRRILVEALQKVPDNRASNWDGERKTT*
Ga0116218_103213413300009522Peatlands SoilSMDLDSRYRLRRVLVEALQKVPENRSTEWDGGGKK*
Ga0116221_106275533300009523Peatlands SoilFEFVSMDLDSRYRLRRILVEALQKVPDNRANNWDGERKTT*
Ga0116136_102829943300009547PeatlandFVSMDLDSRYRLRRVLVEALQKVPDNRVANWDGERRT*
Ga0116125_113579823300009628PeatlandRARVNELGFEFVKMDLDSRYRLRRVLVEALEKSPENRSPDWDGGRKS*
Ga0116102_118386723300009632PeatlandRGEVLLRRARVNEIGFEFVSMDLDSRYRLRRILVEALQKVPDNRASNWDGERKTT*
Ga0116117_100183483300009635PeatlandLLRRARVNEIGFEFVGMDLDSRYRLRRVLVEALQKIPDNSGPNWDGERKS*
Ga0116112_105797913300009636PeatlandEVLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKLPDNRSADWDGERKT*
Ga0116118_100402093300009637PeatlandGFEFVSMDLDSRYRLRRVLVEALQKVPDNRVANWDGERRT*
Ga0116118_101477413300009637PeatlandEIGFEFVSMDLDSRYRLRRVLVEALQKLPDNRSADWDGQRKT*
Ga0116118_108843333300009637PeatlandGFEFVSMDLDSRYRLRRILVEALQKVPDNRASNWDGERKTT*
Ga0116118_119210313300009637PeatlandGFEFVSMDLDSRYRLRRVLVEALQKLPDNRSADWDGERKT*
Ga0116122_101469813300009639PeatlandRVNEIGFEFVSMDLDSRYRLRRVLVEALQKLPDNRSADWDGQRKT*
Ga0116122_101609613300009639PeatlandRVNEIGFEFVSMDLDSRYRLRRVLVEALQKLPDNRSADWDGERKT*
Ga0116120_112986913300009641PeatlandSMDLDSRYRLRRVLVEALQRVPDNRSADWDGERKI*
Ga0116121_129294513300009644PeatlandGFEFVKMDLDSRYRLRRVLVEALEKSPENRSPDWDGGRKS*
Ga0116106_126006313300009645PeatlandMDLDSRYRLRRILVEALQKVPDNRAANWDGERKT*
Ga0116224_1023725213300009683Peatlands SoilEVLLRRARVNEIGFEFVSMDLDSRFRLRRVLVEALQKVPENRASNWDGERTT*
Ga0116101_100022813300009759PeatlandGQVLLRRARVNELGFEFVKMDLDSRYRLRRVLVEALQKIPDNSGPNWDGERKS*
Ga0116219_1060531013300009824Peatlands SoilKIRGEVLLRRARVNEIGFEFVSMDLDSRYRLRRILVEALQRVPDNRSAEWDGARKE*
Ga0116223_1011635713300009839Peatlands SoilARVNEIGFEFVSMDLDSRYRLRRVLVEALQKAPDNRSTNWDGGRKT*
Ga0116223_1074002923300009839Peatlands SoilMDLDSRYRLRRVLVEALQKLPDNRAANWDGERKT*
Ga0074044_1062192623300010343Bog Forest SoilGFEFVSMDLDSRYRLRRVLVEALQRVPDNRASAWDGERKI*
Ga0074044_1073610423300010343Bog Forest SoilFEFVSMDLDSRYRLRRVLVEAVEKAPDNRSNQWDGERKG*
Ga0136449_10041677013300010379Peatlands SoilIGFEFVSMDLDSRYRLRRILVEALQKVPDNRANNWDGERKTT*
Ga0126350_1041323223300010880Boreal Forest SoilARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRSSNWDGDRKI*
Ga0138523_105634813300011054Peatlands SoilEIGFEFVSMDLDSRYRLRRVLVEALQKVPENRSTEWDGGRKK*
Ga0137392_1070573423300011269Vadose Zone SoilVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRSSNWDGERKT*
Ga0137391_1028583133300011270Vadose Zone SoilFVSMDLDSRYRLRRVLVEALQKVPDNRSSNWDGERKT*
Ga0137393_1098590913300011271Vadose Zone SoilLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRSSEWDGERKT*
Ga0137393_1175612923300011271Vadose Zone SoilLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRSTEWDGERKT*
Ga0137399_1029017413300012203Vadose Zone SoilIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRSSNWDGERKT*
Ga0137399_1150267913300012203Vadose Zone SoilEVLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRSSHWDGERKT*
Ga0137380_1072966813300012206Vadose Zone SoilGFEFVSMDLDSRYRLRRILVEATEKAPENRAGAWDGERKV*
Ga0137385_1119532213300012359Vadose Zone SoilEVLLRRARVNEIGFEFVSMDLDSRYRLRRILVEASEKAPENRAGTWDGERKT*
Ga0137390_1085546523300012363Vadose Zone SoilMDLDSRYRLRRVLVEALQKVPDNRSSHWDGERKT*
Ga0137395_1031318413300012917Vadose Zone SoilIRGEVLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRSSNWDGERKT*
Ga0137394_1031965533300012922Vadose Zone SoilVNEIGFEFVSMDLDSRYRLRRILVEASEKAPENRAGAWDGERKT*
Ga0137413_1069753913300012924Vadose Zone SoilRVNEIGFEFVSMDLDSRYRLRRILIEATQKAPENRASTWDGERKT*
Ga0137407_1243258923300012930Vadose Zone SoilRVNEIGFEFVSMDLDSRYRLRRILVEATEKAPENRAGAWDGERKT*
Ga0181521_1025308533300014158BogRARVNEIGFEFVSMDLDSRYRLRRILVEALQRVPENRSADWDGARKV*
Ga0181530_1055662123300014159BogRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRAANWDGERKT*
Ga0181530_1057591113300014159BogRRARVNEIGFEFVSMDLDSRYRLRRILVEALQRAPENRSADWDGARKV*
Ga0181531_1044916533300014169BogEIGFEFVSMDLDSRYRLRRILLDALQRIPDNRNVEWDGERKN*
Ga0182019_1075191123300014498FenFEFVSMDLDSRYRLRRVLVEALQKIPDNRASNWDGERKT*
Ga0181522_1010581413300014657BogLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRAPDWDGERKV*
Ga0187856_103484553300017925PeatlandGFEFVSMDLDSRYRLRRVLVEALQKVPDNRVANWDGERRT
Ga0187856_132654613300017925PeatlandRVNEIGFEFVSMDLDSRYRLRRVLVEALQKLPDNRSADWDGQRKT
Ga0187848_1012692213300017935PeatlandEIGFEFVSMDLDSRYRLRRILVEALQRVPENRSADWDGARKV
Ga0187850_1012361933300017941PeatlandSMDLDSRYRLRRVLVEALQKVPDNRVANWDGERRT
Ga0187850_1032578333300017941PeatlandRRARVNEIGFEFVGMDLDSRYRLRRVLVEALQAIPDNRAAEWDGERKIT
Ga0187817_1001449273300017955Freshwater SedimentARVNEIGFEFVSMDLDSRYRLRRILVEALQKAPENRSSDWDGERKA
Ga0187815_1023872923300018001Freshwater SedimentFEFVSMDLDSRYRLRRILVEALQRVPENRSAEWDGGRKA
Ga0187888_118788213300018008PeatlandRRARVNEIGFEFVGMDLDSRYRLRRVLVEALQKIPDNSGPNWDGERKS
Ga0187872_1041954823300018017PeatlandGFEFVSMDLDSRYRLRRILVEALQRVPENRSADWDGARKV
Ga0187889_1052001223300018023PeatlandEFVSMDLDSRYRLRRVLVEALQRVPDNRSADWDGERKI
Ga0187881_1003770513300018024PeatlandRRARVNEIGFEFVSMDLDSRYRLRRILVEALQRVPENRSADWDGARKV
Ga0187867_1068840213300018033PeatlandIRGEVLLRRARVNEIGFEFVSMDLDSRYRLRRILVEALQRVPDNRSTDWDGARKV
Ga0187863_1058640623300018034PeatlandLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQRVPDNRSATWDGQRNM
Ga0187862_1046762013300018040PeatlandEFVSMDLDSRYRLRRVLVEALQKVPDNRVANWDGERRT
Ga0187871_1025632213300018042PeatlandIGFEFVGMDLDSRYRLRRVLVEALQAIPDNGANNWDGERKTKT
Ga0187871_1055490713300018042PeatlandARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPENRSTEWDGGRKK
Ga0187859_1002575813300018047PeatlandRARVNEIGFEFVSMDLDSRYRLRRILVEALDKIPENRTANWDGERKV
Ga0187859_1077739913300018047PeatlandSMDLDSRYRLRRILVEALQRVPENRSADWDGARKV
Ga0187784_1154359123300018062Tropical PeatlandFEFVSMDLDSRYRLRRILVEALQRVPENRSDDWDGGRKA
Ga0187770_1069586323300018090Tropical PeatlandFVSMDLDSRYRLRRILVEALQRVPENRSGDWDGGRKA
Ga0187798_118821413300019275PeatlandKKIRGQVLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALEKSPENRSREWDGERRE
Ga0187800_135154413300019278PeatlandIGFEFVSMDLDSRYRLRRVLVEALQKSPENRSPDWDGERKA
Ga0187797_140923023300019284PeatlandVKKIRGEVLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKSPENRSPDWDGERKA
Ga0182022_113677953300019785FenVKKYAAKSSSAAPASSEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRAANWDGERKV
Ga0182025_104325913300019786PermafrostIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRSSNWDGERKV
Ga0182031_136943833300019787BogVKKIKGEVLLRRARVNEIGFEFVGMDLDSRYRLRRVLVEALQKIPDNSGPNWDGERKS
Ga0179592_1032624313300020199Vadose Zone SoilVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRSSHWDGERKT
Ga0210407_1002074863300020579SoilRGEVLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRSSNWDGERKT
Ga0210388_1024923113300021181SoilKIRGEVLLRRARVNEIGFEFVSMDLDSRYRLRRILVEALQKVPDNRAANWDGERKV
Ga0210386_1100933313300021406SoilFLRRARVNEIGFEFVNMDLDSRHRLRRVLVEALQKTPDKRSSDWDGERKTNG
Ga0210402_1028649113300021478SoilVSMDLDSRYRLRRVLVEALQKVPDNRSSHWDGERKT
Ga0213851_110171923300021860WatershedsRRARVNEIGFEFVSMDLDSRHRLRRVLMEALEKAPANRSDTWDGERKG
Ga0224558_119359813300023090SoilARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPENRSTDWDGGRKK
Ga0208035_106680623300025406PeatlandKKIRGQVLLRRARVNELGFEFVKMDLDSRYRLRRVLVEALEKSPENRSPDWDGGRKS
Ga0208821_101241613300025432PeatlandFVSMDLDSRYRLRRVLVEALQKVPDNRVANWDGERRT
Ga0208191_100289783300025496PeatlandARVNEIGFEFVSMDLDSRYRLRRVLVEALQKLPDNRSADWDGQRKT
Ga0208820_100302283300025576PeatlandNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRSADWDGERKT
Ga0208691_113190813300025612PeatlandLRRARVNEIGFEFVSMDLDSRYRLRRILVEALQKLPDSRVANWDGERKV
Ga0209735_100563453300027562Forest SoilFVSMDLDSRYRLRRVLVEALQKVPDNRSSNWDGDRKA
Ga0209735_102061033300027562Forest SoilEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRASNWDGERKT
Ga0208042_105360533300027568Peatlands SoilVLLRRARVNEIGFEFVSMDLDSRYRLRRILVEALQKVPDNRANNWDGERKTT
Ga0209220_108672513300027587Forest SoilFVSMDLDSRYRLRRVLVEALQRVPDNRASNWDGERKT
Ga0209221_111117123300027609Forest SoilRGEVLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRPSNWDGERKI
Ga0209117_116005023300027645Forest SoilIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRSSNWDGERKT
Ga0209248_1004631233300027729Bog Forest SoilLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRASNWDGERRV
Ga0209908_1001549123300027745Thawing PermafrostVYKRQVLLRRARVNEIGFEFVSMDLDSRYRLRRILLDALQRIPDNRNVAWDGERKN
Ga0209655_1011788233300027767Bog Forest SoilRVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRGVNWDGERKS
Ga0209655_1030040823300027767Bog Forest SoilKIRGEVLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPESRAATWDGDRRV
Ga0209772_1013976223300027768Bog Forest SoilKGEVLLRRARVNEIGFEFVSMDLDSRYRLRRILVEALQKVPDNRANNWDGERKV
Ga0209039_1031296223300027825Bog Forest SoilQILLRRARVNEIGFEFVSMDLDSRQRLRRFLMEAVEKVPANLSDTWDGERKA
Ga0209415_1057475923300027905Peatlands SoilRVNEIGFEFVSMDLDSRYRLRRVLVEALQRLPDNRSITWDGDRKI
Ga0209415_1084827623300027905Peatlands SoilFVSMDLDSRYRLRRILVEALQKVPDNRANNWDGERKTT
Ga0209415_1112785823300027905Peatlands SoilLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPENRSTEWDGGRKK
Ga0209583_1060932213300027910WatershedsGEVLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRSSEWDGDRKT
Ga0209698_1088443923300027911WatershedsIGFEFVSMDLDSRHRLRTFLMQAVAKVPANLSDTWDGERKA
Ga0209526_1023145223300028047Forest SoilLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRSSNWDGERKT
Ga0302294_1000555363300028740FenQVLLRRARVNEVGFEIVHMDLDSRYRLRRVLVEAIQRAPENRATEWDGERKG
Ga0302224_1048608523300028759PalsaRARVNEIGFEFVSMDLDSRYRLRRILLDALQRIPDNRNVAWDGERKN
Ga0302201_1009921433300028785BogRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRAANWDGERKV
Ga0265338_1085462913300028800RhizosphereKIKGEVLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRASNWDGERKT
Ga0302278_1020088233300028866BogRVNEIGFEFVSMDLDSRYRLRRILVEALQKVPDNRASNWDGERKV
Ga0311362_1008960873300029913BogEIGFEFVSMDLDSRYRLRRILVEALQKVPDNRASNWDGERKV
Ga0311346_1085652523300029952BogRGEVLLRRARVNEIGFEFVSMDLDSRYRLRRILVEALQKVPDNRASNWDGERKV
Ga0302212_109647423300030492FenEVGFEIVHMDLDSRYRLRRVLVEAIQRAPENRATEWDGERKG
Ga0311356_1202259013300030617PalsaRARVNEIGFEFVGMDLDSRYRLRRVLVEAAQKLPDDEAKDWDGERKP
Ga0316363_1006493843300030659Peatlands SoilVSMDLDSRYRLRRVLVEALQKAPDNRSTNWDGGRKT
Ga0316363_1037910123300030659Peatlands SoilGFEFVSMDLDSRYRLRRILVEALQKVPDNRANNWDGERKTT
Ga0302180_1020797023300031028PalsaEVLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDTRAADWDGERKT
Ga0265329_1021129823300031242RhizosphereQVLLRRARVNEIGFEFVSMDLDSRYRLRRVLVEALLKSPENRSPDWDGERKV
Ga0265331_1056154723300031250RhizosphereVNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRAANWDGDRRPT
Ga0307474_1091239323300031718Hardwood Forest SoilGFEFVSMDLDSRYRLRRVLVEALQKVPDNRASNWDGERKK
Ga0311367_1200239723300031918FenGFEFVSMDLDSRYRLRRILVEASEKAPENRSSTWDGERKT
Ga0307479_1054289013300031962Hardwood Forest SoilNEIGFEFVSMDLDSRYRLRRVLVEALQKVPDNHASNWDGERKK
Ga0306922_1140929213300032001SoilEVLLRRARVNEIGFEFVSMDLDSRYRLRRVLIDSLEKAPSNRPDEWDGQRKPTKS
Ga0311301_1085779313300032160Peatlands SoilEFVSMDLDSRYRLRRVLVEAVQRVPDNRASNWDGERKA
Ga0311301_1245396913300032160Peatlands SoilNEIGFEFVSMDLDSRYRLRRVLVEALQKLPDNRAANWDGERKT
Ga0326727_1060777313300033405Peat SoilIGFEFVSMDLDSRYRLRRVLVEALQKVPDNRAANWDGERKT
Ga0371490_107998813300033561Peat SoilRGQVLLRRARVNEIGFEFVAMDLDSRYRLRRVLVDALQRSPENRSPDWDGDRNM
Ga0314862_0054389_729_8633300033803PeatlandVNEIGFEFVAMDLDSRYRLRRILVEALQRSPENRSPDWDGDRKV

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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