Metagenome / Metatranscriptome Family F042538

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F042538
Family Type	Metagenome / Metatranscriptome
Number of Sequences	158
Average Sequence Length	54 residues
Representative Sequence	MQFVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGASRLFGFF
Number of Associated Samples	114
Number of Associated Scaffolds	158

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.38 %
% of genes near scaffold ends (potentially truncated)	26.58 %
% of genes from short scaffolds (< 2000 bps)	81.65 %
Associated GOLD sequencing projects	107
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.747 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (17.722 % of family members)
Environment Ontology (ENVO)	Unclassified (32.278 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.101 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.10% β-sheet: 0.00% Coil/Unstructured: 43.90%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 158 Family Scaffolds
PF04392	ABC_sub_bind	9.49
PF06808	DctM	5.70
PF00903	Glyoxalase	5.06
PF06186	DUF992	4.43
PF00216	Bac_DNA_binding	2.53
PF00072	Response_reg	1.90
PF09663	Amido_AtzD_TrzD	1.90
PF03734	YkuD	1.90
PF00702	Hydrolase	1.27
PF01764	Lipase_3	1.27
PF01914	MarC	1.27
PF00188	CAP	0.63
PF00196	GerE	0.63
PF00149	Metallophos	0.63
PF08281	Sigma70_r4_2	0.63
PF03480	DctP	0.63
PF01546	Peptidase_M20	0.63
PF01042	Ribonuc_L-PSP	0.63
PF17171	GST_C_6	0.63
PF00027	cNMP_binding	0.63
PF00970	FAD_binding_6	0.63
PF04290	DctQ	0.63
PF01936	NYN	0.63
PF00528	BPD_transp_1	0.63
PF12681	Glyoxalase_2	0.63
PF05099	TerB	0.63
PF02518	HATPase_c	0.63
PF13417	GST_N_3	0.63
PF08241	Methyltransf_11	0.63
PF13505	OMP_b-brl	0.63
PF13601	HTH_34	0.63
PF13442	Cytochrome_CBB3	0.63
PF14707	Sulfatase_C	0.63

COG ID	Name	Functional Category	% Frequency in 158 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	9.49
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	2.53
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	1.90
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	1.90
COG2095	Small neutral amino acid transporter SnatA, MarC family	Amino acid transport and metabolism [E]	1.27
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.63
COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	General function prediction only [R]	0.63
COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	Cell cycle control, cell division, chromosome partitioning [D]	0.63
COG3793	Tellurite resistance protein TerB	Inorganic ion transport and metabolism [P]	0.63

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.75 %
Unclassified	root	N/A	20.25 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.75 %
Unclassified	root	N/A	20.25 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.75 %
Unclassified	root	N/A	20.25 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	68.99 %
Unclassified	root	N/A	20.25 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	65.19 %
Unclassified	root	N/A	20.25 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	58.86 %
Unclassified	root	N/A	20.25 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.25 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	12.66 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	5.06 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3.80 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.63 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.63 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.25 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	11.39 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	5.06 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	3.16 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.63 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.63 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.63 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.25 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	5.06 %
unclassified Hyphomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium	3.16 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.90 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.90 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.63 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.63 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.63 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.25 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	5.06 %
Hyphomicrobium sp. 99	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. 99	3.16 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.90 %
Bradyrhizobium sp. LCT2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LCT2	1.27 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.63 %
Bradyrhizobium sp. Ec3.3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	0.63 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.63 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.63 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.63 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_8992354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1362	Open in IMG/M
2162886012\|MBSR1b_contig_3783539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	999	Open in IMG/M
2170459010\|GIO7OMY01A3VJT	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	504	Open in IMG/M
3300000787\|JGI11643J11755_11845043	All Organisms → cellular organisms → Bacteria → Proteobacteria	965	Open in IMG/M
3300001430\|JGI24032J14994_102697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	622	Open in IMG/M
3300003371\|JGI26145J50221_1012804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. 99	756	Open in IMG/M
3300003911\|JGI25405J52794_10029903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1128	Open in IMG/M
3300003911\|JGI25405J52794_10033320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1075	Open in IMG/M
3300004114\|Ga0062593_101139501	Not Available	813	Open in IMG/M
3300004156\|Ga0062589_101775289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. 99	618	Open in IMG/M
3300004157\|Ga0062590_102018485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. 99	599	Open in IMG/M
3300004268\|Ga0066398_10040635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	899	Open in IMG/M
3300004643\|Ga0062591_101480548	Not Available	678	Open in IMG/M
3300005093\|Ga0062594_101183429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. 99	756	Open in IMG/M
3300005103\|Ga0066813_1016173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	510	Open in IMG/M
3300005162\|Ga0066814_10079770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	586	Open in IMG/M
3300005163\|Ga0066823_10003752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1913	Open in IMG/M
3300005168\|Ga0066809_10019515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1360	Open in IMG/M
3300005168\|Ga0066809_10044438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	980	Open in IMG/M
3300005169\|Ga0066810_10102099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	636	Open in IMG/M
3300005294\|Ga0065705_10674020	All Organisms → cellular organisms → Bacteria → Proteobacteria	665	Open in IMG/M
3300005294\|Ga0065705_11168631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	508	Open in IMG/M
3300005295\|Ga0065707_10652618	Not Available	662	Open in IMG/M
3300005329\|Ga0070683_100313951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1492	Open in IMG/M
3300005332\|Ga0066388_100053920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	4171	Open in IMG/M
3300005332\|Ga0066388_100425587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1971	Open in IMG/M
3300005332\|Ga0066388_100427372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1968	Open in IMG/M
3300005332\|Ga0066388_100537579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1800	Open in IMG/M
3300005332\|Ga0066388_100840664	All Organisms → cellular organisms → Bacteria	1505	Open in IMG/M
3300005332\|Ga0066388_101742598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1104	Open in IMG/M
3300005332\|Ga0066388_102769060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	895	Open in IMG/M
3300005332\|Ga0066388_106604648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	584	Open in IMG/M
3300005345\|Ga0070692_10313199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	962	Open in IMG/M
3300005354\|Ga0070675_100479132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1119	Open in IMG/M
3300005367\|Ga0070667_100019112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5682	Open in IMG/M
3300005439\|Ga0070711_101932364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	519	Open in IMG/M
3300005614\|Ga0068856_100194056	All Organisms → cellular organisms → Bacteria → Proteobacteria	2045	Open in IMG/M
3300005615\|Ga0070702_101325465	All Organisms → cellular organisms → Bacteria → Proteobacteria	585	Open in IMG/M
3300005713\|Ga0066905_100084272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2101	Open in IMG/M
3300005713\|Ga0066905_100122410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1818	Open in IMG/M
3300005713\|Ga0066905_100281419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1295	Open in IMG/M
3300005713\|Ga0066905_100631714	Not Available	910	Open in IMG/M
3300005713\|Ga0066905_100697928	Not Available	870	Open in IMG/M
3300005713\|Ga0066905_100740347	All Organisms → cellular organisms → Bacteria → Proteobacteria	847	Open in IMG/M
3300005764\|Ga0066903_100731327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1752	Open in IMG/M
3300005764\|Ga0066903_102517811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	997	Open in IMG/M
3300005764\|Ga0066903_103940338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	796	Open in IMG/M
3300005764\|Ga0066903_106175735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	626	Open in IMG/M
3300006028\|Ga0070717_11082141	Not Available	730	Open in IMG/M
3300006047\|Ga0075024_100137741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1102	Open in IMG/M
3300006049\|Ga0075417_10588754	Not Available	565	Open in IMG/M
3300006058\|Ga0075432_10454054	Not Available	563	Open in IMG/M
3300006172\|Ga0075018_10235476	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300006172\|Ga0075018_10474093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	648	Open in IMG/M
3300006175\|Ga0070712_100026079	All Organisms → cellular organisms → Bacteria	3889	Open in IMG/M
3300006579\|Ga0074054_11733709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	853	Open in IMG/M
3300006605\|Ga0074057_11989658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	561	Open in IMG/M
3300006844\|Ga0075428_100599655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1176	Open in IMG/M
3300006844\|Ga0075428_101074006	Not Available	851	Open in IMG/M
3300006847\|Ga0075431_100737071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	961	Open in IMG/M
3300006852\|Ga0075433_10587548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	978	Open in IMG/M
3300006852\|Ga0075433_11737272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	537	Open in IMG/M
3300006854\|Ga0075425_100055081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4455	Open in IMG/M
3300006854\|Ga0075425_100342114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1722	Open in IMG/M
3300006854\|Ga0075425_101314722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	819	Open in IMG/M
3300006871\|Ga0075434_101150689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	788	Open in IMG/M
3300009094\|Ga0111539_10057965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4596	Open in IMG/M
3300009147\|Ga0114129_10303560	All Organisms → cellular organisms → Bacteria	2127	Open in IMG/M
3300009147\|Ga0114129_10593515	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300009156\|Ga0111538_11274235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	928	Open in IMG/M
3300009792\|Ga0126374_10032271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2470	Open in IMG/M
3300009792\|Ga0126374_11030479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. 99	648	Open in IMG/M
3300010043\|Ga0126380_10058976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2117	Open in IMG/M
3300010043\|Ga0126380_10884789	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300010043\|Ga0126380_10997079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	705	Open in IMG/M
3300010046\|Ga0126384_10017163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4619	Open in IMG/M
3300010046\|Ga0126384_10127198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1927	Open in IMG/M
3300010047\|Ga0126382_10509039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	970	Open in IMG/M
3300010047\|Ga0126382_10708928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LCT2	845	Open in IMG/M
3300010047\|Ga0126382_10881083	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300010047\|Ga0126382_11324811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	652	Open in IMG/M
3300010048\|Ga0126373_12095258	Not Available	627	Open in IMG/M
3300010358\|Ga0126370_10529565	Not Available	1002	Open in IMG/M
3300010358\|Ga0126370_11163026	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300010359\|Ga0126376_10889372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	879	Open in IMG/M
3300010360\|Ga0126372_10997303	Not Available	849	Open in IMG/M
3300010361\|Ga0126378_10104260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2806	Open in IMG/M
3300010362\|Ga0126377_10085340	Not Available	2844	Open in IMG/M
3300010362\|Ga0126377_10194982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1937	Open in IMG/M
3300010366\|Ga0126379_10574405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1210	Open in IMG/M
3300010371\|Ga0134125_10869439	Not Available	991	Open in IMG/M
3300010398\|Ga0126383_10099524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2594	Open in IMG/M
3300010398\|Ga0126383_12006096	Not Available	666	Open in IMG/M
3300010398\|Ga0126383_13664113	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300010863\|Ga0124850_1103707	Not Available	786	Open in IMG/M
3300012208\|Ga0137376_11042635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	700	Open in IMG/M
3300012490\|Ga0157322_1006484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	839	Open in IMG/M
3300012496\|Ga0157353_1037010	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300012499\|Ga0157350_1013829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	726	Open in IMG/M
3300012948\|Ga0126375_10003731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	5541	Open in IMG/M
3300012948\|Ga0126375_10803854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LCT2	745	Open in IMG/M
3300012971\|Ga0126369_10005821	All Organisms → cellular organisms → Bacteria	9125	Open in IMG/M
3300012984\|Ga0164309_10629280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	842	Open in IMG/M
3300012989\|Ga0164305_10011698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4260	Open in IMG/M
3300013105\|Ga0157369_10244827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1872	Open in IMG/M
3300013296\|Ga0157374_11293562	Not Available	751	Open in IMG/M
3300014325\|Ga0163163_10536920	Not Available	1232	Open in IMG/M
3300014497\|Ga0182008_10992856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	500	Open in IMG/M
3300014968\|Ga0157379_11258184	Not Available	713	Open in IMG/M
3300015372\|Ga0132256_102843522	Not Available	582	Open in IMG/M
3300015373\|Ga0132257_101055724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1024	Open in IMG/M
3300015374\|Ga0132255_101037531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1231	Open in IMG/M
3300015374\|Ga0132255_102658991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	765	Open in IMG/M
3300015374\|Ga0132255_104697612	Not Available	579	Open in IMG/M
3300017944\|Ga0187786_10109880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	942	Open in IMG/M
3300017947\|Ga0187785_10002430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6142	Open in IMG/M
3300017947\|Ga0187785_10010830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3095	Open in IMG/M
3300017947\|Ga0187785_10049307	All Organisms → cellular organisms → Bacteria	1576	Open in IMG/M
3300018076\|Ga0184609_10562521	Not Available	514	Open in IMG/M
3300018081\|Ga0184625_10213107	Not Available	1012	Open in IMG/M
3300019362\|Ga0173479_10186005	Not Available	864	Open in IMG/M
3300019879\|Ga0193723_1084636	Not Available	906	Open in IMG/M
3300020018\|Ga0193721_1075478	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300021560\|Ga0126371_10152924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2370	Open in IMG/M
3300021560\|Ga0126371_10281216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1786	Open in IMG/M
3300025735\|Ga0207713_1029073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2482	Open in IMG/M
3300025919\|Ga0207657_10046753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3789	Open in IMG/M
3300025927\|Ga0207687_11863370	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300025961\|Ga0207712_10966145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	755	Open in IMG/M
3300025986\|Ga0207658_10187278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1717	Open in IMG/M
3300026900\|Ga0207444_1000262	All Organisms → cellular organisms → Bacteria → Proteobacteria	3220	Open in IMG/M
3300027873\|Ga0209814_10101639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1220	Open in IMG/M
3300027909\|Ga0209382_10003898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20372	Open in IMG/M
3300028380\|Ga0268265_10261556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1539	Open in IMG/M
3300028587\|Ga0247828_11159619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	515	Open in IMG/M
3300028807\|Ga0307305_10183062	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300030916\|Ga0075386_11783986	Not Available	551	Open in IMG/M
3300030972\|Ga0075400_11889682	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300031057\|Ga0170834_100499181	Not Available	674	Open in IMG/M
3300031128\|Ga0170823_14111850	Not Available	505	Open in IMG/M
3300031231\|Ga0170824_114642330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1763	Open in IMG/M
3300031446\|Ga0170820_10550827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1471	Open in IMG/M
3300031469\|Ga0170819_13575664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1445	Open in IMG/M
3300031720\|Ga0307469_11951869	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300031736\|Ga0318501_10550072	Not Available	632	Open in IMG/M
3300031913\|Ga0310891_10078386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	980	Open in IMG/M
3300031940\|Ga0310901_10478747	Not Available	554	Open in IMG/M
3300031943\|Ga0310885_10094873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1343	Open in IMG/M
3300031944\|Ga0310884_10230693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1003	Open in IMG/M
3300032013\|Ga0310906_10030233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2458	Open in IMG/M
3300032013\|Ga0310906_10210180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1187	Open in IMG/M
3300032013\|Ga0310906_10375448	Not Available	932	Open in IMG/M
3300032075\|Ga0310890_10045261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2482	Open in IMG/M
3300032075\|Ga0310890_10578854	Not Available	866	Open in IMG/M
3300032122\|Ga0310895_10499681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	611	Open in IMG/M
3300032261\|Ga0306920_100065800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5301	Open in IMG/M
3300032782\|Ga0335082_10029093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5874	Open in IMG/M
3300033158\|Ga0335077_10008593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	12675	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.05%
Host-Associated	Host-Associated	25.95%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.89%
Plants	Host-Associated → Plants	25.95%
Aquatic	Environmental → Aquatic	3.16%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.35%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.96%
Sediment	Environmental → Aquatic → Sediment	3.16%
Roots	Host-Associated → Plants → Roots	0.63%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.63%
Loam	Environmental → Terrestrial → Soil → Loam	16.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.19%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.16%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.16%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.16%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.63%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.19%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.66%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.33%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.16%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.16%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.16%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.90%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.63%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	17.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.66%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.16%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.16%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.53%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.53%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.27%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	1.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.27%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.27%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.27%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.63%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.63%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.63%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.63%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.63%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.63%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.63%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.63%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001430	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Environmental	Open in IMG/M
3300003371	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM	Host-Associated	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005103	Soil and rhizosphere microbial communities from Laval, Canada - mgLAA	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012490	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.4.old.040610	Host-Associated	Open in IMG/M
3300012496	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610	Environmental	Open in IMG/M
3300012499	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.yng.030610	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025735	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026900	Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G01K4-12 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030972	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB4 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_02852300	2088090015	Soil	MQFVSDYMKAIDFIALAALVVIAAASLYRAGTVWLLIAAIVVAIWGASRLFGLF
MBSR1b_0224.00002180	2162886012	Miscanthus Rhizosphere	MQFVSDYMKAIDFIALAALVVIGVVSFYRQGSILLLVAAIVVAIWGASRVFGLF
F62_01449850	2170459010	Grass Soil	MQFVSDYMKGIDLIALAALVAIAVASLYRRGSIWLLIAAIVVAIWGASRLFGLNV
JGI11643J11755_118450432	3300000787	Soil	MQFVSDYMKAIDFIALAALVVIAAASLYRAGTVWLLIAAIVVAIWGASRLFGLF*
JGI24032J14994_1026972	3300001430	Corn, Switchgrass And Miscanthus Rhizosphere	MQFVSDYMKAIDFIALAALVVIGVVSFYRQGSILLLVAAIVVAIWGA
JGI26145J50221_10128041	3300003371	Arabidopsis Thaliana Rhizosphere	MQFVSDYMKAIDFIALAALVVIGVVSFYRQGSILLLVAAIVVAIWGASR
JGI25405J52794_100299033	3300003911	Tabebuia Heterophylla Rhizosphere	MQFVSDYMKAIDFIALAALVLIAAASLYRAGTIWLFVAAIVVAIWGASRLFGLF*
JGI25405J52794_100333202	3300003911	Tabebuia Heterophylla Rhizosphere	MQFVSDYMKAIDFIALAALVVIAAASLYRGGTVWLLIAAIVVAIWGASRLFGLF*
Ga0062593_1011395012	3300004114	Soil	VLSVRTGRPGRNVVQFVSDYMKAIDFIALVALIIIAAASLYRRGTIWLLIAAAVVAIWGASRLFGLF*
Ga0062589_1017752891	3300004156	Soil	VGLPLPAVLSARTGRPGRNVVQFVSDYMKAIDFIALVALIIIAAASLYRRGTIWLLIAAAVVAIWGASRLFGLF*
Ga0062590_1020184851	3300004157	Soil	RTGRPGRNVVQFVSDYMKAIDFIALVALIIIAAASLYRRGTIWLLIAAAVVAIWGASRLFGLF*
Ga0066398_100406352	3300004268	Tropical Forest Soil	MQFVSDYMKAIDFVTLAALVVIAAASFSRGGTIWLLVAAVVVAIWGASRLLGFF*
Ga0062591_1014805481	3300004643	Soil	VLSVRTGRPGRNVVQFVSDYMKAIDFIALVALIIIAAASLYRRGTIWLLIAAAVVAIWGASRLF
Ga0062594_1011834291	3300005093	Soil	MQFVSDYMRAIDFVALAALVVIAAASLSRGGTVWLLVAAIVVAIWGASRLFEWTQTR*
Ga0066813_10161732	3300005103	Soil	MQFVSDYMKAIDFIALAALVVIGVVSFFRQGSILLLIAAIVVAIWGASRVFGLF*
Ga0066814_100797702	3300005162	Soil	MQFVSDYMKGIDLIALAALVAIAVASLYRRGSSIWLLIAAIVVAIWGAIRLFGLNV*
Ga0066823_100037522	3300005163	Soil	MQFVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGASRLFGFF*
Ga0066809_100195151	3300005168	Soil	MQFVSDYMKAIDFIALAALVVIGVASFYRQGSIWLLVAAVVVAIWGASRVFGLF*
Ga0066809_100444381	3300005168	Soil	MQFVSDYMKGIDFVALAALVVIAAASLSRGGTIWLLIAAIVVAIWGASRLFGLF*
Ga0066810_101020992	3300005169	Soil	MQFVSDYMKGIDLIALAALVAIAVASLYRRGSIWLLIAAIVVAIWGASRLFGLNV*
Ga0065705_106740201	3300005294	Switchgrass Rhizosphere	MQFVSDYMKAIDFIALAALVVIAAASFYRQGTILLLIAAMGASRLFGF
Ga0065705_111686312	3300005294	Switchgrass Rhizosphere	MQFVSDYMKAIDFIALAALVVIGVVSFYRQGSILLLVAAIVVAIW
Ga0065707_106526181	3300005295	Switchgrass Rhizosphere	MQFVSDYMKVIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIW
Ga0070683_1003139512	3300005329	Corn Rhizosphere	MQFVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAVWGASRLFGFF*
Ga0066388_1000539204	3300005332	Tropical Forest Soil	MSAFGSIERILMQFVSDYMKAIDFIALAALVAIAAASLYRAGTIWLFIAAIVVAIWGASRLFGLF*
Ga0066388_1004255872	3300005332	Tropical Forest Soil	MQFVGDYLKAIDFIALAALVVIAAASFYRQGTIWLLIAAVVVAIWGASRLFGLF*
Ga0066388_1004273722	3300005332	Tropical Forest Soil	MQFVSDYMKAIDFIALAALVVIGAASVSRGGTIWLLVAAIVVAIWGASRLFGLF*
Ga0066388_1005375792	3300005332	Tropical Forest Soil	MQFVSDYMKAIDFVALAALVAIAAAFFFRGGTIWLLVAAIVVAIWGASRLFGIF*
Ga0066388_1008406642	3300005332	Tropical Forest Soil	MQFVSDYMKAIDFIALAALVVLAVASIYRGGTVWLLVAAIVVAIWGASRLFGLF*
Ga0066388_1017425981	3300005332	Tropical Forest Soil	VQFVSDYLKAIDVVALVALVLIAAASFYRQGTIWLLIAAVVIAVWGASRIFGLF*
Ga0066388_1027690602	3300005332	Tropical Forest Soil	MQFVSDYMKSIDFVALAALVVIAAASFSRGGTIWLLVAAIVVAIWGASRLFGLF*
Ga0066388_1066046482	3300005332	Tropical Forest Soil	LSDYLKVIDLIALAALLIIAGASFYRRGTIWLLIAAVVVAIWGASRLFGVA*
Ga0070692_103131993	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MQFVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGASR
Ga0070675_1004791323	3300005354	Miscanthus Rhizosphere	MQFVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGAS
Ga0070667_1000191125	3300005367	Switchgrass Rhizosphere	MQFVSDYMKAIDFIALAALVVIGVVSFYRQGSILLLVAAIVVAIWGASRVFGLF*
Ga0070711_1019323642	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MQFVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGSSRLFGVF*
Ga0068856_1001940565	3300005614	Corn Rhizosphere	VQFVSDYMKAIDFIALLALIIIAAASLYRRGTIWLLIAAAVVAIWGASRLFGLF*
Ga0070702_1013254651	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	IDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGASRLFGFF*
Ga0066905_1000842723	3300005713	Tropical Forest Soil	MQFVSDYMKAIDFIALAALVVLAAASLYRGGTIWLLIAAIVVAIWGASRLFGLF*
Ga0066905_1001224101	3300005713	Tropical Forest Soil	MQFVSDYMKAIDFIALAALVVIAAASLYRAGTIWLFIAAIVVAIWGASRLFGLF*
Ga0066905_1002814192	3300005713	Tropical Forest Soil	MQFVSDYMKAIDFIALAALVVIAAASFYRRGTIWLMIAAIVVAIWGASRLFGLF*
Ga0066905_1006317142	3300005713	Tropical Forest Soil	MQFVSDYMKAIDFIALAALVVIAAASLYRAGTIWLFVAAIVVAIWGASRLFGLF*
Ga0066905_1006979282	3300005713	Tropical Forest Soil	MQFVSDYMKAIDFIALAALVVIAAASLYRGGTILLLVAAIVVAIWGASRLFGLF*
Ga0066905_1007403471	3300005713	Tropical Forest Soil	MQFVSDYMKAIDFIALAALVLIAAASLYRAGTIWLFVAAIVVAIWGASRLFDLF*
Ga0066903_1007313272	3300005764	Tropical Forest Soil	MQFVSDYMKAIDFIALAALVAIGAASFSRGGTVWLLVAAVVVAIWGASRLFGLF*
Ga0066903_1025178112	3300005764	Tropical Forest Soil	MQFVSDYMRAIDFIALAALVVIAAASLYRGGTLWLLIAAIVVAIWGASRLFDVF*
Ga0066903_1039403382	3300005764	Tropical Forest Soil	MQFVSDYMKAIDFIALAALVAIGAASFSRGGTVWLLIAVVVVATWGASRFLGLF*
Ga0066903_1061757352	3300005764	Tropical Forest Soil	LVQFVSDYMKAIDFIALAAIVVIAAASFYRRGTIWLLIAAIVVAIWGASRLFGLF*
Ga0070717_110821411	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	QFVSDYMKAIDFIALLALITIAAASLYRRGTIWLLIAAAVVAIWGASRLFGLF*
Ga0075024_1001377412	3300006047	Watersheds	MQFVSDYMKAIDFIALAALVVIAAASLSRGGTIWLLIAAIVVATWGASRLFGLF*
Ga0075417_105887542	3300006049	Populus Rhizosphere	MKATDFVALAALVVIAAASLYREGTIWLLIAAIVVAIWGASRLFGLF*
Ga0075432_104540542	3300006058	Populus Rhizosphere	MQFVSDYMKAIDFIALAALVVIAAASFYRQGTIWLLIAAIVVAIWGASRLFGLF*
Ga0075018_102354762	3300006172	Watersheds	MQFVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAALVVAIWGSSRLFGVF*
Ga0075018_104740932	3300006172	Watersheds	MQFVSDYLKGIDLIALAALVAIAVASLYRRGSIWLLIAAIVVAIWGASRLFGLNV*
Ga0070712_1000260797	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	IDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGASRLFGMF*
Ga0074054_117337091	3300006579	Soil	MQFVSDYMKGIDLIALAALVAIAVASLYRRGSIWLLIAAIVVAIWDASRMFGLNV*
Ga0074057_119896581	3300006605	Soil	IDFIALAALVVIGVVSFFRQGSILFFIAAIVVAIWGASRLFGFF*
Ga0075428_1005996552	3300006844	Populus Rhizosphere	LETNLMQFVSDYMKAIDFIALAALVVIAAASLYRAGTVWLLIAAIVVAIWGASRLFGLF*
Ga0075428_1010740063	3300006844	Populus Rhizosphere	MQFVSDYMKVIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGASRVFGLF*
Ga0075431_1007370712	3300006847	Populus Rhizosphere	MQFVSDYMKGIDFIALAALVVIAAASLYRAGTVWLLIAAIVVAIWGASRLFGLF*
Ga0075433_105875481	3300006852	Populus Rhizosphere	SMQFVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGASRLFGFF*
Ga0075433_117372722	3300006852	Populus Rhizosphere	MQFVSDYMKAIDFIALAALIVIAGASLYRAGTVWLLIAAIVVAIWGGSRLFGLF*
Ga0075425_1000550815	3300006854	Populus Rhizosphere	MQFVSDYMKAIDFIALAALAVIGVVSFYRQGSILLLVAAIIVAIWGASRVFGLF*
Ga0075425_1003421142	3300006854	Populus Rhizosphere	MQFVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGASRLFGVF*
Ga0075425_1013147222	3300006854	Populus Rhizosphere	MQFVSDYMKAIDFIALAALVVIAVASLYRAGTVWLLIAAIVVAIWGGSRLFGLF*
Ga0075434_1011506891	3300006871	Populus Rhizosphere	MQFVSDYMKAIDFIALAALVVIAVASLYRAGTVWLLIAAIVVAIWGISRLFGLF*
Ga0111539_100579652	3300009094	Populus Rhizosphere	MQFVSDYMKAIDFIALTALVVIGVVSFYRQGSILLLVAAIVVAIWGASRVFGLF*
Ga0114129_103035602	3300009147	Populus Rhizosphere	MKATDFVALAALVVIVAASLYRGGTIWLLIAAIVVAIWGASRLFGLF*
Ga0114129_105935152	3300009147	Populus Rhizosphere	VGESAAESNLMQFVSDYMKAIDFIALAALVVIAVASLYRAGTVWLLIAAIVVAIWGISRLFGLF*
Ga0111538_112742352	3300009156	Populus Rhizosphere	DYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGASRLFGFF*
Ga0126374_100322713	3300009792	Tropical Forest Soil	MQFVSDYMKAIDFVTLTALVVIGAASFSRGGTIWLLVAAVVVAIWGASRLFGFF*
Ga0126374_110304791	3300009792	Tropical Forest Soil	VQFVSDYLKAIDVVALVALVLIAAASFYRQGTIWLVIAAVVIAVWGASRLFGLF*
Ga0126380_100589763	3300010043	Tropical Forest Soil	MQFVSDYMKAIDFVTLAALVVIAAASISRGGTIWLLVAAVVVAIWGASRLFGFF*
Ga0126380_108847891	3300010043	Tropical Forest Soil	MQFVSDYMKAIDFIALAALVAIGAASFSRGGTVWLLVAAVVVAIWGASRLFGL
Ga0126380_109970792	3300010043	Tropical Forest Soil	MQFVSDYMKAIDFIALAALVAIAAASFSRGGTVWLLVAAVVVAIWGASRLFGLF*
Ga0126384_100171634	3300010046	Tropical Forest Soil	MQFVSDYMKAIDFIALVALVVIAAASFYRRGTIWLMIAAIVVAIWGASRLFGLF*
Ga0126384_101271981	3300010046	Tropical Forest Soil	MQFVSDYMKAIDFVTLAALVVIAAASFSCGGTIWLLVAAVVVAIWGASRLFGLF*
Ga0126382_105090392	3300010047	Tropical Forest Soil	SDYFKAIDFIALVALVVIAAASLYRGGTIWLLIAAVVVAIWGASRLFGLF*
Ga0126382_107089282	3300010047	Tropical Forest Soil	MQFVSDYMKAIDFIALAALVVIAAASFYRRGTIWLMIAAIVVAIWGASRLF
Ga0126382_108810832	3300010047	Tropical Forest Soil	DLVQFVSDYMKAIDFIALAALVIIAAASFYRRGTIWLLIAAIVVAIWGASRLFGLF*
Ga0126382_113248112	3300010047	Tropical Forest Soil	DFIALAALVVIAAASLYRGGTVWLLIAAIVVAIWGASRLFGLF*
Ga0126373_120952581	3300010048	Tropical Forest Soil	VQFVSDYMKAIDFIALAALVIIAAASFYRRGTIWLLIAAIVVAIWGASRLLGLF*
Ga0126370_105295653	3300010358	Tropical Forest Soil	VQFVSDYMKAIDFIALAALVIIAAASFYRRGTLWLLIAAIVVAIWGASRLLGLF*
Ga0126370_111630261	3300010358	Tropical Forest Soil	MQFVSDYMKAIDFVTLAAPVVIGAASFSRGGTIWLLVAAVVVAIWGASRLLG
Ga0126376_108893723	3300010359	Tropical Forest Soil	MQFVSDYFKAIDFIAFVALVVIAAASLCRGGATLLLIAALVVAI*
Ga0126372_109973032	3300010360	Tropical Forest Soil	MQFVADYLKAIDFIALAALVVIAAASFYRQGTIWLLIAAVVVAIWGASRLFGLF*
Ga0126378_101042602	3300010361	Tropical Forest Soil	MQFVSDYMKAIDFVTLAALVVIAAASFSCGGTIWLLVAAVVVAIWGASRLFGFF*
Ga0126377_100853405	3300010362	Tropical Forest Soil	MQFVSDYMKAIDFVALAAFVAIAAASLYRGRTIWLLIAAIAIAIWGASRLFGLF*
Ga0126377_101949822	3300010362	Tropical Forest Soil	MQFVSDYMKAIDFIALAALVVIAAASLYRAGTIWLFISAIVVAIWGASRLFGLF*
Ga0126379_105744051	3300010366	Tropical Forest Soil	MQFVGDYLKAIDFIALAALVVIAAASFYRQGTIWLLIAAVVVAIWGASRLFG
Ga0134125_108694392	3300010371	Terrestrial Soil	GHATKRNSMQFVSDYMKAIDFIALAALVVIAAASLHRGGTIWLLVAAIVVAIWGSSRLFGVF*
Ga0126383_100995243	3300010398	Tropical Forest Soil	MQFVSDYMKAIDFVTLTALVVIGAASFSRGGTIWLLVAAVVVAIWGASRLLGFF*
Ga0126383_120060961	3300010398	Tropical Forest Soil	VQFVSDYMKAIDFIALAALVIIAAASFYRRGTIWLLIAAIVVAIWGASRLFDLF*
Ga0126383_136641132	3300010398	Tropical Forest Soil	MQFVSDYMKAIDFIALAALVAIGAASFSRGGTVWLLIAAVVVATWGASRFFGLF*
Ga0124850_11037071	3300010863	Tropical Forest Soil	VQFVSDYMKAIDFIALAALVIIAAASFYRRGTIWLLIAAIVVAIWGASRL
Ga0137376_110426352	3300012208	Vadose Zone Soil	MQFVSDYMKVIDFIALAALVVIGVVSFYRQGSILLLVAAIVVAIWGASRVFGLF*
Ga0157322_10064842	3300012490	Arabidopsis Rhizosphere	MQFVSDYMKAIDFIALAALVVIAAASLYRGGTISLLVAAIVVAIWGATRLFDFF*
Ga0157353_10370101	3300012496	Unplanted Soil	MQFVSDYIKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGATRLFDFF*
Ga0157350_10138292	3300012499	Unplanted Soil	MQFVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGATRLFDFF*
Ga0126375_100037313	3300012948	Tropical Forest Soil	MQFVSDYMKAIDFVTLAALVVIAAASFSRGGTIWLLVAAVVVAIWGASRLFGFF*
Ga0126375_108038542	3300012948	Tropical Forest Soil	MQFVSDYMKAIDFIALAALIVIAAASLFRGGTILLLVAAMVVAILGASRLL*
Ga0126369_100058219	3300012971	Tropical Forest Soil	MQFVGDYLKAIDFIALAALVVIAAASFYRQGTIWLLIAAVVLAIWGASRLFGLF*
Ga0164309_106292802	3300012984	Soil	MQFVSDYMKAIDFVALAALVVIAAASLSRGGTVWLLVAAIVVAIWGASRLFGLF*
Ga0164305_100116981	3300012989	Soil	MQFVSDYMKAIDFIALAALVVIGVVSFYRQGSILLLIAAIVVAIWAASLVFCLF*
Ga0157369_102448273	3300013105	Corn Rhizosphere	MQFVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGASRVFGLF*
Ga0157374_112935621	3300013296	Miscanthus Rhizosphere	VVQFVSDYMKAIDFIALLALIIIAAASLYRRGTIWLLIAAAVVAIWGASR
Ga0163163_105369202	3300014325	Switchgrass Rhizosphere	MQFVSDYMKAIDFIALLALIIIAAASLYRRGTIWLLIAAAVVAIWGASRLFGLF*
Ga0182008_109928561	3300014497	Rhizosphere	MQFVSDYMKAIDFIALAALVVIGAASLYRGGTIWLLVAAIVVAIWGASRLFGMF*
Ga0157379_112581842	3300014968	Switchgrass Rhizosphere	TKRNSMQFVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGSSRLFGVF*
Ga0132256_1028435221	3300015372	Arabidopsis Rhizosphere	ATKRNSMQSVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGSSRLFGVF
Ga0132257_1010557242	3300015373	Arabidopsis Rhizosphere	MQSVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGSSRLFGVF*
Ga0132255_1010375312	3300015374	Arabidopsis Rhizosphere	MQFVSDYIKVIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGATRLFDFF*
Ga0132255_1026589912	3300015374	Arabidopsis Rhizosphere	MQFVSDYMKAIDFIALAALVVIGVVSFYRQGSILLVVAAIVVAIWGASRVFGLF*
Ga0132255_1046976122	3300015374	Arabidopsis Rhizosphere	TGRPGRNVVQFVSDYMKAIDFIALLALITIAAASLYRRGTIWLLIAAAVVAIWGASRLFGLF*
Ga0187786_101098803	3300017944	Tropical Peatland	MQFVSDYMKAIDFIALAALVAIGAASFSRGGTVWLLVAAVVVAIW
Ga0187785_100024302	3300017947	Tropical Peatland	MQFVSDYMKAIDFIALAALVVIGAASVSRGGTIWLLVAAIVVAIWGASRLFGLF
Ga0187785_100108302	3300017947	Tropical Peatland	MQFVSDYMKAIDFIALAALVAIGAASFSRGGTVWLLVAAVVVAIWGASRLFGLF
Ga0187785_100493074	3300017947	Tropical Peatland	MQFVTDYLKAIDFVALAALVIIAAASFYRRGTIWLLIAAIVLAIWGASRLFGLF
Ga0184609_105625211	3300018076	Groundwater Sediment	MQFVSDYMKAIDFIALAALVAIGVVSFYRQGSILLLVAAIVVAIWGASRLFGLF
Ga0184625_102131072	3300018081	Groundwater Sediment	MQFVSDYMKAIDFIALAALVVIAGASLYRAGTVWLFIAAIVVAIWGGSRLFGLF
Ga0173479_101860051	3300019362	Soil	VGLPLPAVLSARTGRPGRNVVQFVSDYMKAIDFIALVALIIIAAASLYRRGTIWLLIAAAVVAIWGASRLFGLF
Ga0193723_10846362	3300019879	Soil	MQFVSDYMKVIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGASRVFGLF
Ga0193721_10754782	3300020018	Soil	MQFVSDYMKAIDFIALAALVAIGVVSFYRQGSILLLVAAIVVAIWGASRVFGLF
Ga0126371_101529242	3300021560	Tropical Forest Soil	MQFVGDYLKAIDFIALAALVVIAAASFYRQGTIWLLIAAVVVAIWGASRLFGLF
Ga0126371_102812162	3300021560	Tropical Forest Soil	MQFVSDYMKAIDFVTLAALVVIAAASFSRGGTIWLLVAAVVVAIWGASRLFGFF
Ga0207713_10290734	3300025735	Switchgrass Rhizosphere	MQFVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAVWGASRLFGFF
Ga0207657_100467533	3300025919	Corn Rhizosphere	MQFVSDYMKAIDFIALAALVVIGAASLYRGGTIWLLVAAIVVAIWGASRLFGFF
Ga0207687_118633701	3300025927	Miscanthus Rhizosphere	MQFVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGSSRLFGVF
Ga0207712_109661452	3300025961	Switchgrass Rhizosphere	HATKRNSMQFVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGASRLFGF
Ga0207658_101872781	3300025986	Switchgrass Rhizosphere	MQFVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAVW
Ga0207444_10002621	3300026900	Soil	MQFVSDYMKAIDFIALAALVVIGVVSFYRQGSILLLVAAIVVAIWGASRVFGL
Ga0209814_101016391	3300027873	Populus Rhizosphere	MKATDFVALAALVVIAAASLYREGTIWLLIAAIVVAIWGASRLFGLF
Ga0209382_100038981	3300027909	Populus Rhizosphere	FVSDYMKAIDFIALAALVVIAAASLYRAGTVWLLIAAIVVAIWGASRLFGLF
Ga0268265_102615561	3300028380	Switchgrass Rhizosphere	TFQPGHATKRNSMQFVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGASRLFGFF
Ga0247828_111596191	3300028587	Soil	LMQFVSDYMKVIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGASRVFGLF
Ga0307305_101830621	3300028807	Soil	MQFVSDYMKVIDFIALAALVVIGVVSFYRQGSILLLVAAIVVAIWGASRVFGLF
Ga0075386_117839862	3300030916	Soil	MQFVSDYMKAIDFIALAALVVIGVASFYRQGFIWLLVAAIVVAIWGASRLFGLF
Ga0075400_118896822	3300030972	Soil	MQFVSDYMKGIDLIALAALVAIAVASLYRRGSIWLLIAAIVVAIWGANRLFGLNV
Ga0170834_1004991811	3300031057	Forest Soil	MQFFSDYMKAIDFIALAALVVIAVASFYRQGFIWLLVAAIVVAIWGASRLFGLF
Ga0170823_141118501	3300031128	Forest Soil	MQFFSDYMKAIDFIALAALVVIAVASFYRQGFIWLLVAAIVVAIWGASRLFG
Ga0170824_1146423303	3300031231	Forest Soil	MQFVSDYMKGIDLIALAALVAIAVASLYRRGSIWLLIAAIVVAIWGAIRLFGLNV
Ga0170820_105508272	3300031446	Forest Soil	MQFVSDYMRAIDFIALAALVVIGVASFYRQGFIWLLVAAIVVAIWGASRLFGLF
Ga0170819_135756641	3300031469	Forest Soil	VRKFMQFVSDYIKGIDLIALAALVAIAVASLYRRGSIWLLIAAIVVAIWGANRLFGLNV
Ga0307469_119518691	3300031720	Hardwood Forest Soil	MQFVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGASRLFGMF
Ga0318501_105500722	3300031736	Soil	VQFVSDYMKAIDFIALAALIVIAAASFYRRGTIWLLVAAIVVAIWGASRLFGFF
Ga0310891_100783862	3300031913	Soil	MQSVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGSSRLFGVF
Ga0310901_104787472	3300031940	Soil	YIKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGSSRLFGVF
Ga0310885_100948733	3300031943	Soil	MQFVSDYIKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGSSRLFGVF
Ga0310884_102306932	3300031944	Soil	MQFVSDYMKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGATRLFDFF
Ga0310906_100302331	3300032013	Soil	IDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGSSRLFGVF
Ga0310906_102101802	3300032013	Soil	MQFVSDYIKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGATRLFDFF
Ga0310906_103754482	3300032013	Soil	MQFVSDYMKAIDFIALAALVVIGVVSFYRQGSILLLIAAIVVAIWGA
Ga0310890_100452613	3300032075	Soil	MQFVSDYMKAIDFISLAALVVIAAASLYRGGTIWLLVAAIVVAIWGSSRLFGVF
Ga0310890_105788541	3300032075	Soil	PIERNSMQFVSDYMKAIDFIALAALVVIGVVSFFRQGSILLLIAAIVVAIWGASRVFGLF
Ga0310895_104996812	3300032122	Soil	GYATKRNSMQFVSDYIKAIDFIALAALVVIAAASLYRGGTIWLLVAAIVVAIWGATRLFDFF
Ga0306920_1000658005	3300032261	Soil	MRFVTDYLKTIDFIALAALVIIAGASIYRRGTIWLLIAAIVVAIWGASRLFGVA
Ga0335082_100290934	3300032782	Soil	MQFVTNYMKAIDFLALAALVGIAGASVYRRGTIWLLVAAIVVAIWGTTRLLGIV
Ga0335077_1000859311	3300033158	Soil	MQFVTNYTKAIDFLALAALVGIAGASVYRRGTIWLLVAAIVVAI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F042538

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences