NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F041979

Metagenome / Metatranscriptome Family F041979

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F041979
Family Type Metagenome / Metatranscriptome
Number of Sequences 159
Average Sequence Length 40 residues
Representative Sequence MSQIGSFALLLALGLSAYSFLAGLLALFRRDAASARLGETA
Number of Associated Samples 139
Number of Associated Scaffolds 159

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 59.12 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 91.82 %
Associated GOLD sequencing projects 136
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (69.811 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(9.434 % of family members)
Environment Ontology (ENVO) Unclassified
(25.157 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(48.428 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 53.62%    β-sheet: 0.00%    Coil/Unstructured: 46.38%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 159 Family Scaffolds
PF11154DUF2934 38.36
PF00581Rhodanese 29.56
PF00072Response_reg 4.40
PF00856SET 3.77
PF14579HHH_6 3.14
PF05258DciA 3.14
PF01336tRNA_anti-codon 1.89
PF07593UnbV_ASPIC 1.26
PF01425Amidase 1.26
PF07722Peptidase_C26 0.63
PF07494Reg_prop 0.63
PF07715Plug 0.63
PF14329DUF4386 0.63
PF10282Lactonase 0.63
PF01850PIN 0.63
PF00342PGI 0.63

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 159 Family Scaffolds
COG5512Predicted nucleic acid-binding protein, contains Zn-ribbon domain (includes truncated derivatives)General function prediction only [R] 3.14
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 1.26
COG0166Glucose-6-phosphate isomeraseCarbohydrate transport and metabolism [G] 0.63
COG3292Periplasmic ligand-binding sensor domainSignal transduction mechanisms [T] 0.63

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms69.81 %
UnclassifiedrootN/A30.19 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001139|JGI10220J13317_10183803All Organisms → cellular organisms → Bacteria819Open in IMG/M
3300001154|JGI12636J13339_1047778All Organisms → cellular organisms → Bacteria533Open in IMG/M
3300001174|JGI12679J13547_1009311All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300001305|C688J14111_10004976All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3657Open in IMG/M
3300001471|JGI12712J15308_10132033All Organisms → cellular organisms → Bacteria641Open in IMG/M
3300001546|JGI12659J15293_10032566All Organisms → cellular organisms → Bacteria1274Open in IMG/M
3300001593|JGI12635J15846_10809634All Organisms → cellular organisms → Bacteria537Open in IMG/M
3300002245|JGIcombinedJ26739_100279516All Organisms → cellular organisms → Bacteria → Acidobacteria1555Open in IMG/M
3300002245|JGIcombinedJ26739_100427154All Organisms → cellular organisms → Bacteria1203Open in IMG/M
3300002561|JGI25384J37096_10020181All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2594Open in IMG/M
3300002917|JGI25616J43925_10308171All Organisms → cellular organisms → Bacteria589Open in IMG/M
3300004080|Ga0062385_10351180All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae865Open in IMG/M
3300004092|Ga0062389_101908342All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300005332|Ga0066388_102053949All Organisms → cellular organisms → Bacteria1026Open in IMG/M
3300005406|Ga0070703_10503401All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae545Open in IMG/M
3300005458|Ga0070681_11984957All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter510Open in IMG/M
3300005541|Ga0070733_10575203All Organisms → cellular organisms → Bacteria755Open in IMG/M
3300005542|Ga0070732_10931382All Organisms → cellular organisms → Bacteria531Open in IMG/M
3300005545|Ga0070695_100190104All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1461Open in IMG/M
3300005557|Ga0066704_10259153All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1180Open in IMG/M
3300005557|Ga0066704_10933181All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae536Open in IMG/M
3300005576|Ga0066708_10515145All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae771Open in IMG/M
3300005712|Ga0070764_10162052All Organisms → cellular organisms → Bacteria1235Open in IMG/M
3300005719|Ga0068861_100909613All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae834Open in IMG/M
3300005764|Ga0066903_100917630All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1587Open in IMG/M
3300005891|Ga0075283_1101475All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae539Open in IMG/M
3300005983|Ga0081540_1251529All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300006028|Ga0070717_11401918All Organisms → cellular organisms → Bacteria635Open in IMG/M
3300006041|Ga0075023_100548731Not Available529Open in IMG/M
3300006050|Ga0075028_100746735All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300006052|Ga0075029_100092553All Organisms → cellular organisms → Bacteria1806Open in IMG/M
3300006055|Ga0097691_1039506All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1745Open in IMG/M
3300006102|Ga0075015_100987377All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300006162|Ga0075030_100981138All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300006173|Ga0070716_100020093All Organisms → cellular organisms → Bacteria3502Open in IMG/M
3300006173|Ga0070716_100741411All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae755Open in IMG/M
3300006755|Ga0079222_10828193All Organisms → cellular organisms → Bacteria761Open in IMG/M
3300006797|Ga0066659_11350131All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300009088|Ga0099830_11532384Not Available555Open in IMG/M
3300009521|Ga0116222_1391237Not Available604Open in IMG/M
3300009523|Ga0116221_1102013All Organisms → cellular organisms → Bacteria → Acidobacteria1268Open in IMG/M
3300009623|Ga0116133_1104403Not Available722Open in IMG/M
3300009624|Ga0116105_1066593Not Available853Open in IMG/M
3300009683|Ga0116224_10225297Not Available896Open in IMG/M
3300009700|Ga0116217_10639386All Organisms → cellular organisms → Bacteria661Open in IMG/M
3300010360|Ga0126372_12066754Not Available617Open in IMG/M
3300010371|Ga0134125_10512250All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1329Open in IMG/M
3300010371|Ga0134125_10691387All Organisms → cellular organisms → Bacteria → Acidobacteria1125Open in IMG/M
3300010373|Ga0134128_10961681All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium944Open in IMG/M
3300010398|Ga0126383_13597749All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300011269|Ga0137392_10385318All Organisms → cellular organisms → Bacteria1163Open in IMG/M
3300012096|Ga0137389_11780209Not Available512Open in IMG/M
3300012096|Ga0137389_11796710Not Available509Open in IMG/M
3300012189|Ga0137388_10334951All Organisms → cellular organisms → Bacteria1392Open in IMG/M
3300012201|Ga0137365_10106701All Organisms → cellular organisms → Bacteria2107Open in IMG/M
3300012210|Ga0137378_10350078All Organisms → cellular organisms → Bacteria1372Open in IMG/M
3300012211|Ga0137377_10919899Not Available806Open in IMG/M
3300012683|Ga0137398_10142632All Organisms → cellular organisms → Bacteria → Acidobacteria1548Open in IMG/M
3300012685|Ga0137397_11362226Not Available501Open in IMG/M
3300012882|Ga0157304_1095079All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300012917|Ga0137395_11137549Not Available551Open in IMG/M
3300012918|Ga0137396_10265356All Organisms → cellular organisms → Bacteria1268Open in IMG/M
3300012961|Ga0164302_11338831All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300012988|Ga0164306_10992579All Organisms → cellular organisms → Bacteria691Open in IMG/M
3300014498|Ga0182019_10542781Not Available810Open in IMG/M
3300014654|Ga0181525_10253469All Organisms → cellular organisms → Bacteria → Acidobacteria960Open in IMG/M
3300014658|Ga0181519_10582179All Organisms → cellular organisms → Bacteria690Open in IMG/M
3300014968|Ga0157379_10618892All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1012Open in IMG/M
3300014968|Ga0157379_11447585All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium667Open in IMG/M
3300017822|Ga0187802_10355909All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium576Open in IMG/M
3300017823|Ga0187818_10570445All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300017932|Ga0187814_10089052All Organisms → cellular organisms → Bacteria → Acidobacteria1136Open in IMG/M
3300017946|Ga0187879_10286692All Organisms → cellular organisms → Bacteria → Acidobacteria915Open in IMG/M
3300017955|Ga0187817_10723314All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium635Open in IMG/M
3300017966|Ga0187776_10536973All Organisms → cellular organisms → Bacteria805Open in IMG/M
3300017972|Ga0187781_10006445All Organisms → cellular organisms → Bacteria → Acidobacteria8642Open in IMG/M
3300017972|Ga0187781_10933592Not Available633Open in IMG/M
3300017975|Ga0187782_10476119All Organisms → cellular organisms → Bacteria953Open in IMG/M
3300017975|Ga0187782_10858063Not Available703Open in IMG/M
3300017995|Ga0187816_10050262All Organisms → cellular organisms → Bacteria1740Open in IMG/M
3300017995|Ga0187816_10309851All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345694Open in IMG/M
3300018007|Ga0187805_10076196All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1511Open in IMG/M
3300018007|Ga0187805_10151195All Organisms → cellular organisms → Bacteria → Acidobacteria1056Open in IMG/M
3300018024|Ga0187881_10152581All Organisms → cellular organisms → Bacteria1006Open in IMG/M
3300018026|Ga0187857_10115451All Organisms → cellular organisms → Bacteria1296Open in IMG/M
3300018030|Ga0187869_10118157All Organisms → cellular organisms → Bacteria → Acidobacteria1330Open in IMG/M
3300018030|Ga0187869_10601491Not Available520Open in IMG/M
3300018037|Ga0187883_10766205Not Available504Open in IMG/M
3300018040|Ga0187862_10657860Not Available616Open in IMG/M
3300018046|Ga0187851_10048115All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis2800Open in IMG/M
3300018046|Ga0187851_10075906Not Available2127Open in IMG/M
3300018047|Ga0187859_10390402Not Available763Open in IMG/M
3300018047|Ga0187859_10502929All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium675Open in IMG/M
3300018057|Ga0187858_10265325All Organisms → cellular organisms → Bacteria1098Open in IMG/M
3300018057|Ga0187858_10819268Not Available550Open in IMG/M
3300018085|Ga0187772_10480046Not Available874Open in IMG/M
3300018085|Ga0187772_10824394Not Available671Open in IMG/M
3300018086|Ga0187769_10142917All Organisms → cellular organisms → Bacteria1748Open in IMG/M
3300018086|Ga0187769_10218749All Organisms → cellular organisms → Bacteria1412Open in IMG/M
3300018090|Ga0187770_10908046Not Available707Open in IMG/M
3300020004|Ga0193755_1161813All Organisms → cellular organisms → Bacteria671Open in IMG/M
3300020579|Ga0210407_10000806All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae32520Open in IMG/M
3300020582|Ga0210395_10528457All Organisms → cellular organisms → Bacteria887Open in IMG/M
3300021171|Ga0210405_11268881All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium542Open in IMG/M
3300021178|Ga0210408_10696625All Organisms → cellular organisms → Bacteria800Open in IMG/M
3300021178|Ga0210408_11505544All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium504Open in IMG/M
3300021181|Ga0210388_10762437All Organisms → cellular organisms → Bacteria840Open in IMG/M
3300021420|Ga0210394_10693844All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium892Open in IMG/M
3300021432|Ga0210384_10606081All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium983Open in IMG/M
3300021445|Ga0182009_10402240All Organisms → cellular organisms → Bacteria708Open in IMG/M
3300021478|Ga0210402_10990610All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium767Open in IMG/M
3300022714|Ga0242671_1070527Not Available617Open in IMG/M
3300024271|Ga0224564_1134446All Organisms → cellular organisms → Bacteria → Acidobacteria509Open in IMG/M
3300025477|Ga0208192_1041360Not Available952Open in IMG/M
3300025910|Ga0207684_10103393All Organisms → cellular organisms → Bacteria2436Open in IMG/M
3300025922|Ga0207646_10624651All Organisms → cellular organisms → Bacteria966Open in IMG/M
3300025972|Ga0207668_12032440Not Available518Open in IMG/M
3300026271|Ga0209880_1030891All Organisms → cellular organisms → Bacteria1249Open in IMG/M
3300026499|Ga0257181_1071756All Organisms → cellular organisms → Bacteria594Open in IMG/M
3300026557|Ga0179587_10199607All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1267Open in IMG/M
3300027070|Ga0208365_1032611All Organisms → cellular organisms → Bacteria688Open in IMG/M
3300027565|Ga0209219_1014071All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1897Open in IMG/M
3300027645|Ga0209117_1121479Not Available699Open in IMG/M
3300027678|Ga0209011_1192768Not Available558Open in IMG/M
3300027696|Ga0208696_1127352Not Available834Open in IMG/M
3300027698|Ga0209446_1091931Not Available777Open in IMG/M
3300027737|Ga0209038_10262563Not Available517Open in IMG/M
3300027854|Ga0209517_10413881Not Available754Open in IMG/M
3300027903|Ga0209488_10069959All Organisms → cellular organisms → Bacteria2601Open in IMG/M
3300027903|Ga0209488_10644381Not Available764Open in IMG/M
3300027905|Ga0209415_10087248All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis3532Open in IMG/M
3300027911|Ga0209698_11020226Not Available616Open in IMG/M
3300028574|Ga0302153_10196469Not Available691Open in IMG/M
3300028776|Ga0302303_10214119Not Available664Open in IMG/M
3300028866|Ga0302278_10429614Not Available578Open in IMG/M
3300029636|Ga0222749_10469739Not Available676Open in IMG/M
3300029911|Ga0311361_10193521All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2526Open in IMG/M
3300029919|Ga0302141_1067078All Organisms → cellular organisms → Bacteria969Open in IMG/M
3300030014|Ga0302175_10074829Not Available753Open in IMG/M
3300030294|Ga0311349_11162626All Organisms → cellular organisms → Bacteria → Acidobacteria721Open in IMG/M
3300030294|Ga0311349_12028754All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium529Open in IMG/M
3300030399|Ga0311353_10816940Not Available794Open in IMG/M
3300030659|Ga0316363_10227577All Organisms → cellular organisms → Bacteria766Open in IMG/M
3300030991|Ga0073994_11826869Not Available521Open in IMG/M
3300031247|Ga0265340_10561112Not Available503Open in IMG/M
3300031250|Ga0265331_10196574Not Available909Open in IMG/M
3300031521|Ga0311364_10487096All Organisms → cellular organisms → Bacteria1248Open in IMG/M
3300031525|Ga0302326_10566002All Organisms → cellular organisms → Bacteria → Acidobacteria1701Open in IMG/M
3300031740|Ga0307468_100167422All Organisms → cellular organisms → Bacteria → Acidobacteria1438Open in IMG/M
3300031823|Ga0307478_10102124All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2223Open in IMG/M
3300031902|Ga0302322_102726392Not Available609Open in IMG/M
3300032174|Ga0307470_11903108Not Available506Open in IMG/M
3300032205|Ga0307472_101521472All Organisms → cellular organisms → Bacteria654Open in IMG/M
3300032783|Ga0335079_10260749All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1903Open in IMG/M
3300032783|Ga0335079_12000109All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300032828|Ga0335080_12411208Not Available501Open in IMG/M
3300032893|Ga0335069_11044719All Organisms → cellular organisms → Bacteria904Open in IMG/M
3300033004|Ga0335084_11907376Not Available580Open in IMG/M
3300033402|Ga0326728_10325414All Organisms → cellular organisms → Bacteria1378Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil9.43%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland8.18%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil8.18%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil6.92%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland6.29%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment5.03%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil5.03%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.40%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds3.77%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.14%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.14%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.14%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen3.14%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.52%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.52%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog2.52%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.89%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.89%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.89%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.26%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.26%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.26%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.26%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.26%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.26%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere1.26%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.63%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.63%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.63%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.63%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen0.63%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.63%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.63%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.63%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.63%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.63%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.63%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.63%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.63%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001139Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soilEnvironmentalOpen in IMG/M
3300001154Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1EnvironmentalOpen in IMG/M
3300001174Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1EnvironmentalOpen in IMG/M
3300001305Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300001471Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2EnvironmentalOpen in IMG/M
3300001546Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cmEnvironmentalOpen in IMG/M
3300002917Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cmEnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005891Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_304EnvironmentalOpen in IMG/M
3300005983Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1Host-AssociatedOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006055Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300009523Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaGEnvironmentalOpen in IMG/M
3300009623Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10EnvironmentalOpen in IMG/M
3300009624Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10EnvironmentalOpen in IMG/M
3300009683Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaGEnvironmentalOpen in IMG/M
3300009700Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaGEnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012882Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2EnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300014498Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaGEnvironmentalOpen in IMG/M
3300014654Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaGEnvironmentalOpen in IMG/M
3300014658Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaGEnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017823Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017966Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018007Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5EnvironmentalOpen in IMG/M
3300018024Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100EnvironmentalOpen in IMG/M
3300018026Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100EnvironmentalOpen in IMG/M
3300018030Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100EnvironmentalOpen in IMG/M
3300018037Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10EnvironmentalOpen in IMG/M
3300018040Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150EnvironmentalOpen in IMG/M
3300018046Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10EnvironmentalOpen in IMG/M
3300018047Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10EnvironmentalOpen in IMG/M
3300018057Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150EnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018086Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MGEnvironmentalOpen in IMG/M
3300018090Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300020004Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021445Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaGEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300022714Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300024271Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5EnvironmentalOpen in IMG/M
3300025477Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150 (SPAdes)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026271Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191 (SPAdes)EnvironmentalOpen in IMG/M
3300026499Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-BEnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027070Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)EnvironmentalOpen in IMG/M
3300027565Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027645Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027678Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027696Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027698Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027737Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028574Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_2EnvironmentalOpen in IMG/M
3300028776Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1EnvironmentalOpen in IMG/M
3300028866Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029911III_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300029919Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_2EnvironmentalOpen in IMG/M
3300030014Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_3EnvironmentalOpen in IMG/M
3300030294II_Fen_E3 coassemblyEnvironmentalOpen in IMG/M
3300030399II_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300030659Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)EnvironmentalOpen in IMG/M
3300030991Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031247Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaGHost-AssociatedOpen in IMG/M
3300031250Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaGHost-AssociatedOpen in IMG/M
3300031521III_Fen_E2 coassemblyEnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031902Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033402Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MNEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10220J13317_1018380313300001139SoilMSQIGSFALLLALALSTYSFLAGVLALTRPGPASERL
JGI12636J13339_104777833300001154Forest SoilMAQIGSYVLLLALALSAYSFLAGTIALVRRDHGSER
JGI12679J13547_100931123300001174Forest SoilMSQIGSFALLLALGLSVYCFSAGFLSLFGKDAASARLGETARRAGIATF
C688J14111_1000497613300001305SoilMAHIGSFALLLALALSMYSFGGGVLALLFQNDPRSARLGETAR
JGI12712J15308_1013203333300001471Forest SoilMAQIGSFALLLALALSIYSFAAGLFALFFPGPGSERVG
JGI12659J15293_1003256613300001546Forest SoilMSQIGSFALMLALGLSAYCFVAGFLALFSRSAASARLGETARRAGIA
JGI12635J15846_1080963423300001593Forest SoilMSQIGSFALLLALGLSAYSFLAGLLALFNRNAASAR
JGIcombinedJ26739_10027951643300002245Forest SoilMSQIGSFALLLALALCAYSFLAGILALVNKASGSER
JGIcombinedJ26739_10042715413300002245Forest SoilMSQIGSFALMLALGLSAYSFLAGFLALFGRDAASARLG
JGI25384J37096_1002018113300002561Grasslands SoilMAQIGSFALLLALALSAYSFLAGLLALLRPGAGSERLGETARRA
JGI25616J43925_1030817113300002917Grasslands SoilMSQIGSFALLLALGLSAYSFLAGLLALFRRDAASARLGETA
Ga0062385_1035118023300004080Bog Forest SoilMAEIGSFALLLALALSVYCFVAGLIALVRPGGFERLGETA
Ga0062389_10190834233300004092Bog Forest SoilMSQIGSFALLFALTLSAYSFLAGLWALTETGPASERVGETARRAGIATFALV
Ga0066388_10205394913300005332Tropical Forest SoilMSQIGSFALLLALCFSLYSCFAGILSLFNRDARSARLGETARR
Ga0070703_1050340113300005406Corn, Switchgrass And Miscanthus RhizosphereMSQIGSFALLLALALSTYSCLAGVLALTRPGPASERLGETA
Ga0070681_1198495713300005458Corn RhizosphereMSQIGSFALLLALALSTYSFLAGILALARPGPASERLGETARRAG
Ga0070733_1057520333300005541Surface SoilMATIGSYALLLALALSAYSFVAGFFALADPGPGSE
Ga0070732_1093138223300005542Surface SoilMATIGSWSLILALALSAYSFLAGLLSLIEGEGSEYLG
Ga0070695_10019010433300005545Corn, Switchgrass And Miscanthus RhizosphereMSQIGSFALLLALALSTYSFLAGVLALARPGPASERLGETARRAG
Ga0066704_1025915313300005557SoilMSQIGSFSLLLALALSVYSVVAGLIALLRRGPGSERL
Ga0066704_1093318113300005557SoilMSQIGSFALLLALALSAYSFLAGALALAQPGPGSERLGET
Ga0066708_1051514513300005576SoilMPQIGSFALLLALCLSAYSFVAGILALAFPGRGSERLG
Ga0070764_1016205243300005712SoilMPVIGSFALQLALALTAYSFLAGILALAREGPGSARLSETARRA
Ga0068861_10090961313300005719Switchgrass RhizosphereMSQVGSFALLIALALSVYSFLAGIFALIRQGPQSERLGETA
Ga0066903_10091763033300005764Tropical Forest SoilMSQIGSFALLLALALAAYSFVAGALALGRPGAGSE
Ga0075283_110147513300005891Rice Paddy SoilMAQIGSFSLILALALSIYCFLAGFLALARPGAGSERLNETA
Ga0081540_125152923300005983Tabebuia Heterophylla RhizosphereMSQLGSYALLLALALSAYSFLGGLAALVSPGPQSERLGETA
Ga0070717_1140191833300006028Corn, Switchgrass And Miscanthus RhizosphereMAQIGSYVLLLALALSAYSFLAGTVALVRRDHGSER
Ga0075023_10054873113300006041WatershedsMAQIGSFALILALALSGYSFLFGLLALFLPGAVSARLGETAR
Ga0075028_10074673513300006050WatershedsMSQIGSFALLLALCLSAYSFLAGLLALFSKNAASARLG
Ga0075029_10009255343300006052WatershedsMSLIGSFALLLALALAAYSFLAGLFGLFRRDAMGAR
Ga0097691_103950613300006055Arctic Peat SoilMSQIGSFALLLALGLSAYSFLAGLLALFGKDAVSARV
Ga0075015_10098737723300006102WatershedsMAQIGSFALLLALGLSAYSFGAGLLALFGRDAVSARLGE
Ga0075030_10098113823300006162WatershedsMAQIGSFALLLALGLSAYSFGAGLLALFGRDAVSAR
Ga0070716_10002009333300006173Corn, Switchgrass And Miscanthus RhizosphereMSQIGSFALLLALALSAYSFLAGALALAKPGPVSERLGET
Ga0070716_10074141113300006173Corn, Switchgrass And Miscanthus RhizosphereMSQVGSFALLIALALSVYSFLAGIFALIRQGPQSERL
Ga0079222_1082819313300006755Agricultural SoilMSQIGSFALLLALALSAYSFLGGLMALVVKGPGSER
Ga0066659_1135013123300006797SoilMSQVGSFALLLALALSAYSFLAGTLALLRPGASSDRLGETA
Ga0099830_1153238413300009088Vadose Zone SoilMSQIGSFALLLALGLSAYSFLAGLLALFSKDAASARLGETARRA
Ga0116222_139123713300009521Peatlands SoilMSQIGSFALLLALGLSAYCFLAGFVALFRRDAASA
Ga0116221_110201333300009523Peatlands SoilMSQIGSFALLLALGLSAYSFLAGFIALFGKDAASARLG
Ga0116133_110440323300009623PeatlandMSQIGSFALLLALGLSAYSFLAGFLALFRRDAVSARLGETARRAG
Ga0116105_106659313300009624PeatlandMSQIGSFALMLALGLSAYSFLAGFVALFGKDAASAR
Ga0116224_1022529713300009683Peatlands SoilMSQIGSFALLLALGLSAYSFLAGFLALFGKDAASARLGETAR
Ga0116217_1063938613300009700Peatlands SoilMSQLGSFALLLALALSAYSFLAGILALVREGPSSARLSETAR
Ga0126372_1206675413300010360Tropical Forest SoilMSQIGSFALLLALCFSLYSCFAGILSLLKRDARSARLGETAR
Ga0134125_1051225033300010371Terrestrial SoilMSQIGSFALLLALALSTYSFLAGILALARPGPASERLGETA
Ga0134125_1069138733300010371Terrestrial SoilMSQIGSFALLLALALSTYSFLAGVLALARPGPASERLGETAR
Ga0134128_1096168113300010373Terrestrial SoilMSQLGSYALLLALALSAYSFIGGLAALVWPGAQSERLGETA
Ga0126383_1359774923300010398Tropical Forest SoilMAQIGSFALLLALALSAYSFLVGLLALLRRGPGSERLGE
Ga0137392_1038531833300011269Vadose Zone SoilMSQIGSFALLLALGLSAYSFLAGLLALLNRDAASARLGETARRAGIA
Ga0137389_1178020913300012096Vadose Zone SoilMYQIGSFALLLALCLSAYSFLAGLLALFNRDAASARLGETAR
Ga0137389_1179671013300012096Vadose Zone SoilMSQIGSFALLLALCLSAYSFLAGLLALFNRDAASARLGETAR
Ga0137388_1033495133300012189Vadose Zone SoilMNGTVGPPAMSQIGSFALLLALCLSAYSFLAGLLALFNRDAASARLG
Ga0137365_1010670113300012201Vadose Zone SoilMSQIGSFALLLALVLSAYSFLAGLVALSRKGTGAER
Ga0137378_1035007833300012210Vadose Zone SoilMSLIGSYALLFALALSAYSFLGGFAALAFPGVGSERLGETSRRAG
Ga0137377_1091989913300012211Vadose Zone SoilMPSIGTFALLLALSLSSYSFLAGLVALFGRDAGSMRLGETARRA
Ga0137398_1014263243300012683Vadose Zone SoilMSSIGAFALLLALGLSSYSFLAGLLELFGRDAGSMRLGETAPRAGIAT
Ga0137397_1136222613300012685Vadose Zone SoilMSYIGAFALLLALGLSSYSFLAGLLALFGRDAGSMR
Ga0157304_109507923300012882SoilMSQIGSFALLLALALSTYSFLAGVLALTRPGPASERLGET
Ga0137395_1113754913300012917Vadose Zone SoilMAQIGSYALLLALALSAYSFLAGTIALVRRDPGSERM
Ga0137396_1026535643300012918Vadose Zone SoilMAQIGSFALLLALALSVYSFLAGMIALFRQDQSSER
Ga0164302_1133883123300012961SoilMSQIGSFALLLALALSTYSFLAGVLALTRPGPASDRLGET
Ga0164306_1099257913300012988SoilMSQIGSFALLLALALSTYSFLAGVLALTRPGPASERLG
Ga0182019_1054278113300014498FenMSQIGSFALLLALGLSAYSFLAGFLSLFRRDAASARLGETARRAG
Ga0181525_1025346913300014654BogMPQIGSFALLLALALTVYSFLAGLFALLLNSQQSGRLGETARR
Ga0181519_1058217913300014658BogMSQIGSFALLLALALTAYSFLAGLFALLMNSQQSGRLGETARRA
Ga0157379_1061889213300014968Switchgrass RhizosphereMAQIGSFALLLALALSVYSFLAGVISLLRQDQGSE
Ga0157379_1144758533300014968Switchgrass RhizosphereMSQLGSYALLLALALSAYSFIGGLAALVWPGAQSERLGE
Ga0187802_1035590923300017822Freshwater SedimentMAAIGDFVLLLALALSAYSFLFGLLALILPGPGWQRVGETAR
Ga0187818_1057044513300017823Freshwater SedimentMAQIGSFALLFALALSGYSFLAGIVALVRRDEGAERLGETARR
Ga0187814_1008905233300017932Freshwater SedimentMSQIGSFALLLALALCAYSFLAGILALVSKAPSSERLGETA
Ga0187879_1028669233300017946PeatlandMSQIGSFALLLALALCTYSFLAGLLALVIKGSGSERLGETA
Ga0187817_1072331413300017955Freshwater SedimentMAAIGDFVLLLALALSAYSFLFGLLALILPGPGWQRVGETARRAG
Ga0187776_1053697323300017966Tropical PeatlandMSQIGSFALLLALGLSAYSFLAGLLALLGRDAGSLRLGE
Ga0187781_1000644513300017972Tropical PeatlandMATIGSYALLLALALSAYSFLFGLLALVSPGEGSERVGETARRAGV
Ga0187781_1093359223300017972Tropical PeatlandMSQIGSFALLLALGLSVYCFLAGFVALFRRDAASARLGETA
Ga0187782_1047611933300017975Tropical PeatlandMAQIGSFALLLALVLSAYSFGAGLLSLFSRDAASARLGETARRAGIA
Ga0187782_1085806323300017975Tropical PeatlandMAQIGSYALLLALGLSVYSFGAGLLALFGRDAASAR
Ga0187816_1005026243300017995Freshwater SedimentMSQIGSFALLLALGLSAYCFLAGFVALFRRDAASARLGETAR
Ga0187816_1030985113300017995Freshwater SedimentMSTIGSFALLLPLGLSAYSFLAGLIALLGRDAAPARLGETARRAGIAT
Ga0187805_1007619643300018007Freshwater SedimentMSQIGSFALLLALALSAYSFLAGLLALSGKNPGAERLGETARR
Ga0187805_1015119533300018007Freshwater SedimentMSQIGSFALLLALALCAYSFLAGILALVGKGPSSERLGE
Ga0187881_1015258133300018024PeatlandMSQIGSFALMLALGLSAYCFLAGFVALFRRDAASA
Ga0187857_1011545133300018026PeatlandMSQIGSFALLLALGLSAYSFLAGFLALFRKDAASA
Ga0187869_1011815713300018030PeatlandMSQIGSFALLLALALCTYSFLAGLLALIIKGPGAGRLGETARRAG
Ga0187869_1060149123300018030PeatlandMSEIGSFALMAALGLSAYSFLAGLLSLFNKDAASARLGET
Ga0187883_1076620513300018037PeatlandMSQIGSFALLLALGLSAYSFLAGFLALFRRDAVSARLGETAR
Ga0187862_1065786013300018040PeatlandMSQIGSFALLLALGLSAYSFLAGFLALFSRDAASARLGET
Ga0187851_1004811513300018046PeatlandMSQIGSFALMLALGLSAYSFLAGFVALFGKDAASARLGETARR
Ga0187851_1007590613300018046PeatlandMSQIGSFALLLALALCTYSFLAGLLALIIKGPGAGR
Ga0187859_1039040233300018047PeatlandMSQLGSFALLLALALSAYSFLAGILALVREGPSSARLSET
Ga0187859_1050292923300018047PeatlandMSQIGSFALLLALALCTYSFLAGLLALVIKGSGSERLGET
Ga0187858_1026532533300018057PeatlandMLALGLSAYSFLAGFLALFGKDAASARLGETARRAGIATFAAVLLAGI
Ga0187858_1081926813300018057PeatlandMSQIGSFALMLALGLSAYCFLAGFVALFRRDAASARLGET
Ga0187772_1048004613300018085Tropical PeatlandMATIGSFALLLALALSVYSFLAGLLSLFGRDAASAR
Ga0187772_1082439433300018085Tropical PeatlandMAQIGSFALLLAFVLSAYSFGAGLLSLFRRDAASARLGETARRAGIA
Ga0187769_1014291733300018086Tropical PeatlandMSQIGSFTLLLALALSGYCFLAGLLALIREGPGSARL
Ga0187769_1021874933300018086Tropical PeatlandMSQIGSFALLLALALCAYSFLAGLVALAREQNTSSARLSE
Ga0187770_1090804633300018090Tropical PeatlandMAQIGSFALLLALGLAAYSFGAGLLSLFNRDAASAR
Ga0193755_116181323300020004SoilMSQIGSFALLLALVLSAYSFLAGLVALVRKGPAAERLGE
Ga0210407_1000080613300020579SoilMSQIGSFALLLALGLSAYSFLAGLLALFNKDAASARL
Ga0210395_1052845733300020582SoilMSQIGSFALLLALALCTYSFLAGLLALIIKGVGSERL
Ga0210405_1126888123300021171SoilMSQIGSFALLLALALCAYSFLAGILALINKGPGSE
Ga0210408_1069662523300021178SoilMSQIGSFALLLALALCAYSFLAGLLALVIKGPGAGRLGETARR
Ga0210408_1150554423300021178SoilMSQIGSFALLLGLALCAYSFLAGLLALVINGPGSGRLGET
Ga0210388_1076243723300021181SoilMAEIGSFALLLALGLSVYSFLAGIIALIKGDGSERLGETAPAPA
Ga0210394_1069384433300021420SoilMSQIGSFALLLGLALCAYSFLAGLLALVINGPGSGRQTCEE
Ga0210384_1060608113300021432SoilMSQIGSFALLLALALSAYSFLAGALALARPGPGSERLGET
Ga0182009_1040224033300021445SoilMSQLGSYALLLALALSAYSFIGGLAALVWPGAQSERLGETARRAGIAVF
Ga0210402_1099061023300021478SoilMAAIGDFALLLALALSIYSFLFGLLALILPGPGWQRVGET
Ga0242671_107052713300022714SoilMPIIGSFALQLALALTAYSFLAGILALAWEGPFWTRLGETARRAGIASFAIV
Ga0224564_113444623300024271SoilMSQIGSFALLLALALCAYSFLAGILGLVIKSPGAGRLGETAR
Ga0208192_104136023300025477PeatlandMSQIGSFALLIALDLSAYSFLAGFLALRDKGAAWARLGETARRA
Ga0207684_1010339343300025910Corn, Switchgrass And Miscanthus RhizosphereMAQIGSFALLLALALSAYSFLAGLLALVRPGAGSERLGETAR
Ga0207646_1062465133300025922Corn, Switchgrass And Miscanthus RhizosphereMAQIGSFALLLALALSAYSFLAGLLALVRPGAGSERLGE
Ga0207668_1203244013300025972Switchgrass RhizosphereMSQVGSFALLIALALSVYSFLAGIFALIRRGPQSER
Ga0209880_103089113300026271SoilMSQIGSFALLLALGLSAYSFLAGFLALFSRDAASARLGETA
Ga0257181_107175613300026499SoilMSQIGSFALLLGLALSAYSFLAGALALARPGPGSE
Ga0179587_1019960743300026557Vadose Zone SoilMAQIGSYVLLLALALSAYSFLAGTIALVRRDHNSERMGETARRA
Ga0208365_103261133300027070Forest SoilMSQIGSFALLLALALSAYSFLAGLFALARPGAGSDRL
Ga0209219_101407113300027565Forest SoilMSQIGSFALLLALGLSAYSFLAGLLALFSKDAASARL
Ga0209117_112147913300027645Forest SoilMSQIGSFALLLALGLSAYSFLAGFLSLFGKDAASARLGETARRA
Ga0209011_119276823300027678Forest SoilMSQIGSFALLLALALSAYSFLAGVLALARPGPGSERL
Ga0208696_112735213300027696Peatlands SoilMSQIGSFALLLALGLSAYSFLAGFLALFGKDAASARLGETARR
Ga0209446_109193123300027698Bog Forest SoilMSTIGAWALMLALGLSAYSFLAGLVALFGKGAASARLGETARRAGIA
Ga0209038_1026256313300027737Bog Forest SoilMSQIGSFALLLALGLSSYSFLAGFLALFGKSAASARLG
Ga0209517_1041388123300027854Peatlands SoilMSQIGSFALLLALGLSAYCFLAGFVALFRRDAASARLGETA
Ga0209488_1006995913300027903Vadose Zone SoilMSQIGSFALLLGLALSAYSFLAGALALARPGPGSERLG
Ga0209488_1064438113300027903Vadose Zone SoilMSQIGSFALLLALGLSAYSFLAGLLALFRKDAASARLG
Ga0209415_1008724813300027905Peatlands SoilMSQIGSFALMLALGLSAYSFLAGLVALFGKDAASARL
Ga0209698_1102022613300027911WatershedsMSQIGSFALLLALGLSAYSFLAGLLSLFGKDASSARLGETARRA
Ga0302153_1019646913300028574BogMSQIGSFALMAALVLSAYSFLAGLLSLFKKDASSARLGETA
Ga0302303_1021411913300028776PalsaMLALGLSAYSFLAGLVALFGKDAASARLGETARRAGIAT
Ga0302278_1042961413300028866BogMSEIGSFALMAALGLSAYSFLAGLLSLFNKDAASAR
Ga0222749_1046973923300029636SoilMSQIGSFALLLALGLSAYSFLAGLLALFHKDAASARLGETAR
Ga0311361_1019352113300029911BogMAALGLSAYSFLAGLLSLFNKDAASARLGETARRAGIATFAAVLL
Ga0302141_106707813300029919BogMSQIGSFALMAALVLSAYSFLAGLLSLFKKDASSARLGETARRAGIATF
Ga0302175_1007482923300030014FenMSLIGSYALLFALALSAYSFLGGFAALAFPGAGSERLGETARRAGIAIFAV
Ga0311349_1116262623300030294FenMSQLGSFSLLLALGLSVYSFLAGAAALFLKGPASARLAETARRA
Ga0311349_1202875423300030294FenMAQIGSFALLLALALSIYSFGAGILALIYQDQGSERL
Ga0311353_1081694023300030399PalsaMSQIGSFALLLALGLSSYSFLAGFLALFGNDAAAARLGE
Ga0316363_1022757723300030659Peatlands SoilMSQIGSFALLLALALCAYSFLAGLLALVIKGPGSGRLGETARR
Ga0073994_1182686913300030991SoilMSLIGSFALLLALALSAYSFLAGILALSRNGVGSE
Ga0265340_1056111213300031247RhizosphereMAQIGSFALLLALVLSAYSFGAGLLALFGRDAVSA
Ga0265331_1019657413300031250RhizosphereMSQIGSFALLLALGLSSYSFLAGLFALFGKDAASARL
Ga0311364_1048709633300031521FenMSLIGSYALLFALALSAYSFLGGFAALAFPGAGSERLGETA
Ga0302326_1056600233300031525PalsaMSQIGSFALLLALALSSYSFLAGIVSLTGKGSGRARLGETAR
Ga0307468_10016742213300031740Hardwood Forest SoilMSPIGSFALLLALALSAYSFLAGALALARPGPGSERLGE
Ga0307478_1010212443300031823Hardwood Forest SoilMAAIGDFALLLALALSVYSFLFGLLALVLPGPGWE
Ga0302322_10272639213300031902FenMSQIGSFALLLALGLSSYSFLAGLLALFGRDAGSMRL
Ga0307470_1190310813300032174Hardwood Forest SoilMSQIGSFALLLALALSGYSFLAGALALAQPGPGSER
Ga0307472_10152147213300032205Hardwood Forest SoilMPLIGSFALLFALALSAYSFLGGLAALVLPGASSARLGETARRAGI
Ga0335079_1026074913300032783SoilMSQIGSFALLLALALSVYAFLAGIVSLAGLFGSDSDRLG
Ga0335079_1200010923300032783SoilMSEIGSFALLLALALCVYSFLAGLLALVRESNDASARLSE
Ga0335080_1241120813300032828SoilMAQIGSFALLLALGLAVYSFGAGLLSLFGRDAASARLGETARRAGI
Ga0335069_1104471933300032893SoilMSQIGSFALLLALGLSSYSFAAGLLALFGRDAGSLRLGETARRAGIA
Ga0335084_1190737623300033004SoilMSQIGSFALLLALCLAGYSFLAGVLALFQRDAGSLRLGET
Ga0326728_1032541413300033402Peat SoilMSLIGSFALLLALGLSAYSFLAGFLALFGKDAASARL

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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