Metagenome Family F041428

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F041428
Family Type	Metagenome
Number of Sequences	160
Average Sequence Length	68 residues
Representative Sequence	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSDELSALSWNT
Number of Associated Samples	118
Number of Associated Scaffolds	160

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	65.00 %
% of genes near scaffold ends (potentially truncated)	40.62 %
% of genes from short scaffolds (< 2000 bps)	81.25 %
Associated GOLD sequencing projects	106
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.250 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (16.250 % of family members)
Environment Ontology (ENVO)	Unclassified (36.250 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (59.375 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.65% β-sheet: 27.94% Coil/Unstructured: 54.41%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 160 Family Scaffolds
PF11306	DUF3108	25.62
PF08893	DUF1839	3.12
PF13618	Gluconate_2-dh3	1.88
PF13505	OMP_b-brl	1.25
PF12697	Abhydrolase_6	1.25
PF12146	Hydrolase_4	1.25
PF00456	Transketolase_N	0.62
PF13231	PMT_2	0.62
PF05199	GMC_oxred_C	0.62
PF01523	PmbA_TldD	0.62
PF12695	Abhydrolase_5	0.62
PF00326	Peptidase_S9	0.62
PF00732	GMC_oxred_N	0.62

COG ID	Name	Functional Category	% Frequency in 160 Family Scaffolds
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	1.25
COG0021	Transketolase	Carbohydrate transport and metabolism [G]	0.62
COG0312	Zn-dependent protease PmbA/TldA or its inactivated homolog	General function prediction only [R]	0.62
COG3959	Transketolase, N-terminal subunit	Carbohydrate transport and metabolism [G]	0.62

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.25 %
Unclassified	root	N/A	48.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.25 %
Unclassified	root	N/A	48.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.25 %
Unclassified	root	N/A	48.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.75 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	39.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.75 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	39.38 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.75 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	16.88 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	3.12 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.75 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	16.88 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.12 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.75 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	16.88 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.12 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.75 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	9.38 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.12 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	2.50 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	2.50 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.75 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	9.38 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.12 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	2.50 %
unclassified Gemmatimonas	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas	1.25 %
Gemmatimonas phototrophica	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas phototrophica	0.62 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.75 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	9.38 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.12 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	2.50 %
Gemmatimonas sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	1.25 %
Gemmatimonas phototrophica	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas phototrophica	0.62 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.62 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105743404	All Organisms → cellular organisms → Bacteria	1950	Open in IMG/M
3300000550\|F24TB_15929176	Not Available	1034	Open in IMG/M
3300000789\|JGI1027J11758_12724431	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1174	Open in IMG/M
3300000953\|JGI11615J12901_10547355	Not Available	598	Open in IMG/M
3300000955\|JGI1027J12803_107770500	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1479	Open in IMG/M
3300001431\|F14TB_100075213	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1131	Open in IMG/M
3300003267\|soilL1_10088491	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2418	Open in IMG/M
3300003319\|soilL2_10012466	Not Available	1343	Open in IMG/M
3300003324\|soilH2_10136419	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2165	Open in IMG/M
3300003324\|soilH2_10140489	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	5265	Open in IMG/M
3300003324\|soilH2_10363255	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1258	Open in IMG/M
3300004114\|Ga0062593_100120752	All Organisms → cellular organisms → Bacteria	1909	Open in IMG/M
3300004114\|Ga0062593_100284451	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1395	Open in IMG/M
3300004114\|Ga0062593_102437283	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	591	Open in IMG/M
3300004156\|Ga0062589_100988842	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	785	Open in IMG/M
3300004463\|Ga0063356_101577485	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	976	Open in IMG/M
3300004479\|Ga0062595_100394649	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	988	Open in IMG/M
3300004480\|Ga0062592_100026942	All Organisms → cellular organisms → Bacteria	2756	Open in IMG/M
3300004643\|Ga0062591_100691094	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	921	Open in IMG/M
3300005290\|Ga0065712_10278697	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	900	Open in IMG/M
3300005293\|Ga0065715_10223171	All Organisms → cellular organisms → Bacteria	1203	Open in IMG/M
3300005327\|Ga0070658_11022726	Not Available	719	Open in IMG/M
3300005329\|Ga0070683_101836295	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	582	Open in IMG/M
3300005331\|Ga0070670_102188563	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	509	Open in IMG/M
3300005333\|Ga0070677_10144502	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1101	Open in IMG/M
3300005335\|Ga0070666_10132070	All Organisms → cellular organisms → Bacteria	1735	Open in IMG/M
3300005338\|Ga0068868_100547848	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1019	Open in IMG/M
3300005353\|Ga0070669_100807109	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	798	Open in IMG/M
3300005355\|Ga0070671_100220649	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1608	Open in IMG/M
3300005364\|Ga0070673_100950085	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	799	Open in IMG/M
3300005439\|Ga0070711_100111668	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2007	Open in IMG/M
3300005441\|Ga0070700_101733393	Not Available	537	Open in IMG/M
3300005456\|Ga0070678_100048783	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3052	Open in IMG/M
3300005457\|Ga0070662_100029781	All Organisms → cellular organisms → Bacteria	3813	Open in IMG/M
3300005459\|Ga0068867_100070862	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2606	Open in IMG/M
3300005459\|Ga0068867_102001939	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	547	Open in IMG/M
3300005471\|Ga0070698_100241961	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1738	Open in IMG/M
3300005535\|Ga0070684_100768894	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	900	Open in IMG/M
3300005539\|Ga0068853_100722395	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300005546\|Ga0070696_100240905	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1364	Open in IMG/M
3300005548\|Ga0070665_100152449	All Organisms → cellular organisms → Bacteria	2314	Open in IMG/M
3300005548\|Ga0070665_100666071	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300005548\|Ga0070665_100830631	Not Available	937	Open in IMG/M
3300005841\|Ga0068863_101401795	Not Available	707	Open in IMG/M
3300005841\|Ga0068863_101915637	Not Available	603	Open in IMG/M
3300005844\|Ga0068862_100886724	Not Available	876	Open in IMG/M
3300005844\|Ga0068862_102312120	Not Available	549	Open in IMG/M
3300006169\|Ga0082029_1196577	Not Available	912	Open in IMG/M
3300006196\|Ga0075422_10383596	Not Available	619	Open in IMG/M
3300006755\|Ga0079222_11188784	Not Available	681	Open in IMG/M
3300006806\|Ga0079220_10628833	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	770	Open in IMG/M
3300006844\|Ga0075428_101152955	Not Available	818	Open in IMG/M
3300006845\|Ga0075421_100002528	All Organisms → cellular organisms → Bacteria	21863	Open in IMG/M
3300006845\|Ga0075421_100026788	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	7272	Open in IMG/M
3300006845\|Ga0075421_100457791	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1523	Open in IMG/M
3300006846\|Ga0075430_100119955	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2192	Open in IMG/M
3300006846\|Ga0075430_101564405	Not Available	541	Open in IMG/M
3300006847\|Ga0075431_100046463	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4477	Open in IMG/M
3300006847\|Ga0075431_100221376	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1931	Open in IMG/M
3300006847\|Ga0075431_100577345	Not Available	1110	Open in IMG/M
3300006847\|Ga0075431_101992748	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	536	Open in IMG/M
3300006876\|Ga0079217_10016001	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	2542	Open in IMG/M
3300006876\|Ga0079217_10450078	Not Available	781	Open in IMG/M
3300006876\|Ga0079217_10656832	Not Available	695	Open in IMG/M
3300006880\|Ga0075429_100138929	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	2127	Open in IMG/M
3300006894\|Ga0079215_11141343	Not Available	588	Open in IMG/M
3300006918\|Ga0079216_10896805	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300006918\|Ga0079216_11916375	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	512	Open in IMG/M
3300006969\|Ga0075419_10282574	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1115	Open in IMG/M
3300007004\|Ga0079218_10532462	Not Available	1050	Open in IMG/M
3300007004\|Ga0079218_12567884	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	604	Open in IMG/M
3300007076\|Ga0075435_100244428	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1527	Open in IMG/M
3300007076\|Ga0075435_100599584	Not Available	955	Open in IMG/M
3300009094\|Ga0111539_12296830	Not Available	626	Open in IMG/M
3300009147\|Ga0114129_10066908	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	5010	Open in IMG/M
3300009147\|Ga0114129_11072948	Not Available	1010	Open in IMG/M
3300009147\|Ga0114129_12835239	Not Available	575	Open in IMG/M
3300009148\|Ga0105243_11556720	Not Available	686	Open in IMG/M
3300009156\|Ga0111538_12683800	Not Available	624	Open in IMG/M
3300009789\|Ga0126307_10263606	Not Available	1385	Open in IMG/M
3300010036\|Ga0126305_10127725	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1560	Open in IMG/M
3300010038\|Ga0126315_10830796	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	610	Open in IMG/M
3300010042\|Ga0126314_10900650	Not Available	654	Open in IMG/M
3300010166\|Ga0126306_10417210	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1052	Open in IMG/M
3300010166\|Ga0126306_10557648	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	910	Open in IMG/M
3300010362\|Ga0126377_11601549	Not Available	726	Open in IMG/M
3300010400\|Ga0134122_12500183	Not Available	565	Open in IMG/M
3300010400\|Ga0134122_12592918	Not Available	557	Open in IMG/M
3300010401\|Ga0134121_12585613	Not Available	551	Open in IMG/M
3300010403\|Ga0134123_10783076	Not Available	945	Open in IMG/M
3300010403\|Ga0134123_12636696	Not Available	570	Open in IMG/M
3300011119\|Ga0105246_10856426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	811	Open in IMG/M
3300012212\|Ga0150985_103274505	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1108	Open in IMG/M
3300012509\|Ga0157334_1003914	Not Available	1129	Open in IMG/M
3300012514\|Ga0157330_1005416	Not Available	1083	Open in IMG/M
3300012907\|Ga0157283_10395821	Not Available	512	Open in IMG/M
3300012948\|Ga0126375_10325440	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1079	Open in IMG/M
3300012951\|Ga0164300_10093980	Not Available	1301	Open in IMG/M
3300012951\|Ga0164300_10689370	Not Available	617	Open in IMG/M
3300012961\|Ga0164302_10442958	Not Available	900	Open in IMG/M
3300012961\|Ga0164302_10583821	Not Available	807	Open in IMG/M
3300013100\|Ga0157373_10556058	Not Available	832	Open in IMG/M
3300013102\|Ga0157371_11119630	Not Available	604	Open in IMG/M
3300015201\|Ga0173478_10700728	Not Available	541	Open in IMG/M
3300015265\|Ga0182005_1121568	Not Available	744	Open in IMG/M
3300015371\|Ga0132258_10064781	All Organisms → cellular organisms → Bacteria → Proteobacteria	8441	Open in IMG/M
3300015371\|Ga0132258_10426213	Not Available	3302	Open in IMG/M
3300015372\|Ga0132256_100155691	Not Available	2298	Open in IMG/M
3300015373\|Ga0132257_100103156	Not Available	3286	Open in IMG/M
3300015373\|Ga0132257_100225355	Not Available	2230	Open in IMG/M
3300015374\|Ga0132255_100543186	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1712	Open in IMG/M
3300015374\|Ga0132255_101843850	Not Available	919	Open in IMG/M
3300015374\|Ga0132255_101900739	Not Available	905	Open in IMG/M
3300018067\|Ga0184611_1217350	Not Available	679	Open in IMG/M
3300018422\|Ga0190265_13436139	Not Available	528	Open in IMG/M
3300018469\|Ga0190270_10221179	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1620	Open in IMG/M
3300018476\|Ga0190274_10079591	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas phototrophica	2515	Open in IMG/M
3300018476\|Ga0190274_10604928	Not Available	1123	Open in IMG/M
3300025315\|Ga0207697_10021963	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2614	Open in IMG/M
3300025315\|Ga0207697_10088531	All Organisms → cellular organisms → Bacteria → Proteobacteria	1310	Open in IMG/M
3300025321\|Ga0207656_10060634	All Organisms → cellular organisms → Bacteria → Proteobacteria	1659	Open in IMG/M
3300025735\|Ga0207713_1243193	Not Available	533	Open in IMG/M
3300025904\|Ga0207647_10237388	Not Available	1048	Open in IMG/M
3300025908\|Ga0207643_10608009	Not Available	704	Open in IMG/M
3300025932\|Ga0207690_10292085	Not Available	1273	Open in IMG/M
3300025945\|Ga0207679_10050036	All Organisms → cellular organisms → Bacteria	3051	Open in IMG/M
3300025949\|Ga0207667_10762653	Not Available	966	Open in IMG/M
3300025960\|Ga0207651_10552159	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1002	Open in IMG/M
3300025960\|Ga0207651_10751364	Not Available	862	Open in IMG/M
3300026067\|Ga0207678_10691766	Not Available	897	Open in IMG/M
3300026088\|Ga0207641_11855769	Not Available	604	Open in IMG/M
3300026089\|Ga0207648_11177708	Not Available	720	Open in IMG/M
3300026116\|Ga0207674_10824390	Not Available	895	Open in IMG/M
3300026142\|Ga0207698_10583491	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1100	Open in IMG/M
3300027637\|Ga0209818_1005182	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	2529	Open in IMG/M
3300027821\|Ga0209811_10170466	Not Available	814	Open in IMG/M
3300027880\|Ga0209481_10112148	Not Available	1324	Open in IMG/M
3300027880\|Ga0209481_10126218	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1251	Open in IMG/M
3300027880\|Ga0209481_10352350	Not Available	751	Open in IMG/M
3300027909\|Ga0209382_10025936	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	7085	Open in IMG/M
3300027909\|Ga0209382_10028479	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	6738	Open in IMG/M
3300027909\|Ga0209382_10675331	Not Available	1115	Open in IMG/M
3300028379\|Ga0268266_10177389	All Organisms → cellular organisms → Bacteria	1938	Open in IMG/M
3300028379\|Ga0268266_10259150	Not Available	1611	Open in IMG/M
3300028379\|Ga0268266_10810928	Not Available	904	Open in IMG/M
3300028380\|Ga0268265_12155091	Not Available	564	Open in IMG/M
3300031731\|Ga0307405_10243304	Not Available	1334	Open in IMG/M
3300031740\|Ga0307468_101753815	Not Available	586	Open in IMG/M
3300031824\|Ga0307413_10299346	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1219	Open in IMG/M
(restricted) 3300031825\|Ga0255338_1000191	All Organisms → cellular organisms → Bacteria	247862	Open in IMG/M
3300031892\|Ga0310893_10568394	Not Available	515	Open in IMG/M
3300031903\|Ga0307407_10729456	Not Available	749	Open in IMG/M
3300031911\|Ga0307412_10176911	All Organisms → cellular organisms → Bacteria	1601	Open in IMG/M
3300031938\|Ga0308175_100102524	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2639	Open in IMG/M
3300031938\|Ga0308175_100979184	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	934	Open in IMG/M
3300032017\|Ga0310899_10662069	Not Available	527	Open in IMG/M
3300032126\|Ga0307415_100253626	Not Available	1431	Open in IMG/M
3300033412\|Ga0310810_10087972	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	3728	Open in IMG/M
3300033412\|Ga0310810_11308688	Not Available	569	Open in IMG/M
3300034147\|Ga0364925_0123436	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	930	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	55.00%
Environmental	Environmental	45.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	55.00%
Terrestrial	Environmental → Terrestrial	44.38%
Aquatic	Environmental → Aquatic	0.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	35.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	19.38%
Sediment	Environmental → Aquatic → Sediment	0.62%
Floodplain	Environmental → Terrestrial → Floodplain	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	23.12%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.25%
Loam	Environmental → Terrestrial → Soil → Loam	5.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.62%
Sand	Environmental → Terrestrial → Soil → Sand	0.62%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.62%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	23.12%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.12%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	14.37%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.50%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.50%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.25%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.62%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.62%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.62%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	16.25%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	8.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	6.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.38%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.38%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.12%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	3.12%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.12%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.12%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.25%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.25%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.25%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.25%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.25%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.25%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.25%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.62%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.62%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.62%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.62%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.62%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.62%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.62%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.62%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.62%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012509	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6	Environmental	Open in IMG/M
3300012514	Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.old.130510	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025735	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031825 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH1_35cm_T4_195	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1057434041	3300000364	Soil	LGTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPSNWHKLSSDELXALSWNT*
F24TB_159291763	3300000550	Soil	MTNPRLCFVDSLGTDWRIYEVASSNVPAPRGSNCLIFESAQAVRRVWNYPSNWHKLSSEELSALSWNTLPIA*
JGI1027J11758_127244311	3300000789	Soil	MTNPRLCFVDSLGTDWRIYEVASSNVPAPRGSNCLIFESSQAVRRVWNYPSNWHKLSSDELSALSWNT*
JGI11615J12901_105473551	3300000953	Soil	MTNPRLCYVDSVGTDWRIYEVASVNVPAPRGSNCLIFESSQAVRRVWNYPANWHKLSSDELTALSWNT*
JGI1027J12803_1077705002	3300000955	Soil	MTNPRLCFVDSLGTDWRIYEVASSNVPAPRGSNCLIFESSQAVRRVWNYPSNWHKLSSDELSALS
F14TB_1000752132	3300001431	Soil	VDSLGTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPANWHKLSSAELSALSWNT
soilL1_100884913	3300003267	Sugarcane Root And Bulk Soil	MGTDWRIYEVASANVPAPRGRNCLIFESAQAVRRVWNYPSNWHKLSSDELSALSWNT*
soilL2_100124662	3300003319	Sugarcane Root And Bulk Soil	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSDELSALSWNT*
soilH2_101364192	3300003324	Sugarcane Root And Bulk Soil	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESSQAVRRVWNYPSNWQKLSTDELSALSWNT*
soilH2_101404895	3300003324	Sugarcane Root And Bulk Soil	MTNPRLCFVDSMGTDWRIYEVASANVPAPRGRNCLIFESAQAVRRVWNYPSNWHKLSSDELSALSWNT*
soilH2_103632551	3300003324	Sugarcane Root And Bulk Soil	MTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESSQAVRRVWNYPSNWHCLSSDELSALSWNT*
Ga0062593_1001207522	3300004114	Soil	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPVNWQKLSSAELSALSWNT*
Ga0062593_1002844512	3300004114	Soil	GVESQMTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESSQAVRRVWNYPSNWHNLSVDELSALSWNT*
Ga0062593_1024372831	3300004114	Soil	MTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESAQAVRRVWNYPSNWHKLSSDELSALSWNT*
Ga0062589_1009888421	3300004156	Soil	CFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPVNWQKLSSAELSALSWNT*
Ga0063356_1015774852	3300004463	Arabidopsis Thaliana Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPANWHKLSSDELTALSW
Ga0062595_1003946492	3300004479	Soil	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPANWHKLSSDELTALSWNT*
Ga0062592_1000269422	3300004480	Soil	MTNPRLCFVDSLGTDWRIYEVASVNVPAPRGRNCLIFESAQAVRRVWNYPSNWHNLSSDELSALSWNT*
Ga0062591_1006910942	3300004643	Soil	TNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPVNWQKLSSAELSALSWNT*
Ga0065712_102786971	3300005290	Miscanthus Rhizosphere	RLMTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPVNWQKLSSAELSALSWNT*
Ga0065715_102231712	3300005293	Miscanthus Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGRNCLIFESSQAVRRVWNYPNNWHNLTSDELSALSWNT*
Ga0070658_110227262	3300005327	Corn Rhizosphere	PRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPVNWQKLSSAELSALSWNT*
Ga0070683_1018362951	3300005329	Corn Rhizosphere	GQTNANQDGVERLMTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPVNWQKLSSAELSALSWNT*
Ga0070670_1021885631	3300005331	Switchgrass Rhizosphere	LGQTNANQDGVERLMTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPVNWQKLSSAELSALSWNT*
Ga0070677_101445021	3300005333	Miscanthus Rhizosphere	MTNPRLCFVDSVGTDWRIYEVASVNVPAPRGRNCLIFESAQAVRRVWNYPSNWHKLSSDELSALSWNT*
Ga0070666_101320701	3300005335	Switchgrass Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPANWQKLSSAELSALSWNT*
Ga0068868_1005478481	3300005338	Miscanthus Rhizosphere	KESNAGMTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESTQAVRRVWNYPNNWHNLTSDELSALSWNT*
Ga0070669_1008071093	3300005353	Switchgrass Rhizosphere	PRLCFVDSLGTDWRIYEVASVNVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSAELSALSWNT*
Ga0070671_1002206493	3300005355	Switchgrass Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASVNVPAPRGSNCLIFESTQAVRRVWNYPANWHKLSSAELSALSWNT*
Ga0070673_1009500851	3300005364	Switchgrass Rhizosphere	NPRLCFVDSLGTDWRIYEVASVNVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSAELSALSWNT*
Ga0070711_1001116682	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTNPRLCFVDPLGTDWRIYEVASANVPSPRGSNCLIFESAQAVRRVWNYPANWQKLSSAELSALSWNT*
Ga0070700_1017333932	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPANWHKLSSDELTA
Ga0070678_1000487834	3300005456	Miscanthus Rhizosphere	MTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESTQAVRRVWNYPNNWHNLTSDELSALSWNT*
Ga0070662_1000297812	3300005457	Corn Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASVNVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSAELSALSWNT*
Ga0068867_1000708622	3300005459	Miscanthus Rhizosphere	MTNPRLCYVDSLGTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPANWHKLSSDELSALSWNT*
Ga0068867_1020019391	3300005459	Miscanthus Rhizosphere	LMTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAEAVRRVWNYPVNWQKLSSAELSALSWNT*
Ga0070698_1002419612	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGRNCLIFESSQAVRRVWNYPTNWHKLTSDELSALSWNT*
Ga0070684_1007688941	3300005535	Corn Rhizosphere	NPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPVNWQKLSSAELSALSWNT*
Ga0068853_1007223951	3300005539	Corn Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSAE
Ga0070696_1002409051	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPTNWHKLSSDELSALSWNT*
Ga0070665_1001524491	3300005548	Switchgrass Rhizosphere	MTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESAQAVRRVWNYPNNWTHLSSDELSAL
Ga0070665_1006660712	3300005548	Switchgrass Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPANWQKLSSAELSALSWNT*
Ga0070665_1008306312	3300005548	Switchgrass Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGRNCLIFESAQAVRRVWNYPNNWINLSSDELSALSWNT*
Ga0068863_1014017952	3300005841	Switchgrass Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASVNVPAPRGSNCLIFESTEAVRRVWNYPANWHKLSSAELSALSWNT*
Ga0068863_1019156372	3300005841	Switchgrass Rhizosphere	GVERLMTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPVNWQKLSSAELSALSWNT*
Ga0068862_1008867242	3300005844	Switchgrass Rhizosphere	MTNPRLCFVDSVGTDWRIYEVASVNVPAPRGRNCLIFESSQAVRRVWNYPSNWHSLSSDELSALSWNT*
Ga0068862_1023121202	3300005844	Switchgrass Rhizosphere	MTNPRLCFVDSVGTDWRIYEVASINVPAPRGRNCLIFESSQAVRRVWNYPSNWHCLSSDELSALSWNT*
Ga0082029_11965771	3300006169	Termite Nest	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSAELSALSWNT*
Ga0075422_103835961	3300006196	Populus Rhizosphere	RCLGLTNANQDGVESLMTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPANWHKLSSDELTALSWNT*
Ga0079222_111887842	3300006755	Agricultural Soil	MESNDEMTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESSQAVRRVWNYPSNWHKLSCDELSALSWNT*
Ga0079220_106288331	3300006806	Agricultural Soil	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGRNCLIFESSQAVRRVWNYPSNWHKLSCDELSALSWNT*
Ga0075428_1011529551	3300006844	Populus Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASVNVPAPRGRNCLIFESAQAVRRVWNYPANWHNLSSDELSALSWNT*
Ga0075421_10000252814	3300006845	Populus Rhizosphere	MTNPRRCFVDSLGTDWRIYEVASNNVPAPRGRNCLIFESTQAVRRVWNYPANWEHLSIDELSALSWNT*
Ga0075421_1000267886	3300006845	Populus Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASTNVPAPRGRNCLIFESTQAVRRVWNYPSNWEHLSTDELSALSWNI*
Ga0075421_1004577911	3300006845	Populus Rhizosphere	SLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSAELSALSWNT*
Ga0075430_1001199551	3300006846	Populus Rhizosphere	MTNPRRCYVDSLGTDWRIYEVASKNVPAPRGRNCLIFESTQAVRRVWNYPSNWEKLSTDELSALSWNT*
Ga0075430_1015644051	3300006846	Populus Rhizosphere	TTQEPNRLMTNPRLCFVDSLGTDWRIYEVASVNVPAPRGRNCLIFESAQAVRRVWNYPANWHNLSSDELSALSWNT*
Ga0075431_1000464632	3300006847	Populus Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASTNVPAPRGRNCLIFESTQAVRRVWNYPSNWEHLSRDELSALSWNI*
Ga0075431_1002213762	3300006847	Populus Rhizosphere	LTLLLLGRARRRSRADGEQTTQEPNRLMTNPRLCFVDSLGTDWRIYEVASVNVPAPRGRNCLIFESAQAVRRVWNYPANWHNLSSDELSALSWNT*
Ga0075431_1005773452	3300006847	Populus Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASSNVPAPRGSNCLIFESAQAVRRVWNYPSNWHKLSSEELSALSWNT*
Ga0075431_1019927481	3300006847	Populus Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASVNVPAPRGRNCLIFESAQAVRRVWNYPANWHKLSSDELSAL
Ga0079217_100160012	3300006876	Agricultural Soil	MTNPRRCFVDSLGTDWRIYEVASSNVPAPRGRNCLIFESTQAVRRVWNYPANWDMLSTDELSALSWNT*
Ga0079217_104500782	3300006876	Agricultural Soil	MTNPRRCFVDSVGTDWRIYEIASVNVPAPRGRNCLIFESTQAVRRVWNYPSNWEKLSTDELSALSWNT*
Ga0079217_106568323	3300006876	Agricultural Soil	PRLCFVDSVGTDWRIYEVASINVPAPRGRNCLIFESAQAVRRVWNYPANWHNLSSAELSALSWNT*
Ga0075429_1001389293	3300006880	Populus Rhizosphere	GLTEANQDGVESQMTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSAELSALSWNT*
Ga0079215_111413431	3300006894	Agricultural Soil	FVDSVGTDWRIYEIASVNVPAPRGRNCLIFESTQAVRRVWNYPSNWEKLSTDELSALSWNT*
Ga0079216_108968052	3300006918	Agricultural Soil	MTNPRLCFVDSVGTDWRIYEVASINVPAPRGRNCLIFESAQAVRRVWNYPANWHNLSSDELSALSWNT*
Ga0079216_119163751	3300006918	Agricultural Soil	CFVDSLGTDWRIYEVASSNVPAPRGRNCLIFESTQAVRRVWNYPANWDMLSTDELSALSWNT*
Ga0075419_102825742	3300006969	Populus Rhizosphere	LGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSAELSALSWNT*
Ga0079218_105324622	3300007004	Agricultural Soil	MTNPRRCYVDSVGTDWRIYEVASTNVPAPRGRNCLIFESTQAVRRVWNYPSNWEKLSTDELSALSWNT*
Ga0079218_125678841	3300007004	Agricultural Soil	MTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESTQAVRRVWNYPSNWHKLSSDELSALSWNT*
Ga0075435_1002444281	3300007076	Populus Rhizosphere	VDSLGTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPANWHKLSSDELTALSWNT
Ga0075435_1005995841	3300007076	Populus Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASVNVPAPRGRNCLIFESSQAVRRVWNYPSNWHNLSRDELSALSWNT*
Ga0111539_122968301	3300009094	Populus Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPANWHKLSSDELTALSWN
Ga0114129_100669085	3300009147	Populus Rhizosphere	RRGLGLDGSQPGWESKRLMTNPRLCFVDSLGTDWRIYEVASVNVPAPRGSNCLIFESAQAVRRVWNYPSNWHRLSTDELSALSWNT*
Ga0114129_110729481	3300009147	Populus Rhizosphere	MPPSAADPVTQKGVESRMTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESAQAVRRVWNYPSNWHKLSSDELSALSWNT*
Ga0114129_128352391	3300009147	Populus Rhizosphere	MTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESSQAVRRVWNYPSNWHNLSVDELSALSWNT*
Ga0105243_115567202	3300009148	Miscanthus Rhizosphere	DSLGTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPANWHKLSSDELSALSWNT*
Ga0111538_126838001	3300009156	Populus Rhizosphere	VDSLGTDWRIYEVASSNVPAPRGSNCLIFESAQAVRRVWNYPSNWHKLSSEELSALSWNT
Ga0126307_102636061	3300009789	Serpentine Soil	NPRLCFIDSLGTDWRIYEVASANVPAPRGRNCLIFESAQAVRRVWNYPSNWHHLSSDELSALSWNT*
Ga0126305_101277252	3300010036	Serpentine Soil	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGRNCLIFESAQAVRRVWNYPSNWHHLSSDELSALSWNT*
Ga0126315_108307962	3300010038	Serpentine Soil	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGRNCLIFESSQAVRRVWNYPNDWHHLTSDE
Ga0126314_109006501	3300010042	Serpentine Soil	MTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESAQAVRRVWNYPSNWHKLSSDELSA
Ga0126306_104172102	3300010166	Serpentine Soil	MTNPRLCFVDSVGIDWRIYEVASINVPAPRGRNCLIFESAQAVRRVWNYPSNWHNLSSAELSALSWNT*
Ga0126306_105576481	3300010166	Serpentine Soil	PRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESAQAVRRVWNYPNNWTNLSSDELSALSWNT*
Ga0126377_116015492	3300010362	Tropical Forest Soil	GTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSAELSALSWNT*
Ga0134122_125001831	3300010400	Terrestrial Soil	MTNPRLCFVDSLGTDWRIYEVASVNVPAPRGRDCLIFESSQAVRRVWNYPSNWHNLSTDELSALS
Ga0134122_125929181	3300010400	Terrestrial Soil	GTDWRIYEVASANVPAPRGSNCLIFESSQAVRRVWNYPTNWQKLSTDELSALSWNT*
Ga0134121_125856131	3300010401	Terrestrial Soil	MTNPRLCFVDSLGTDWRIYEVASVNVPAPRGRNCLIFESSQAVRRVWNYPSNWHNLSTDELSALSWNT*
Ga0134123_107830761	3300010403	Terrestrial Soil	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPPNWHKLSSDELSALSWNT*
Ga0134123_126366961	3300010403	Terrestrial Soil	LGTDWRIYEVASVNGPAARGSNCLIFESAQAVRRVWNYPANWHKLSSAELSALSWNT*
Ga0105246_108564262	3300011119	Miscanthus Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPVNWQKLSSAELS
Ga0150985_1032745051	3300012212	Avena Fatua Rhizosphere	RRCLGQTNANQDGVERLMTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESSQAVRRVWNYPANWQKLSSAELSALSWNT*
Ga0157334_10039141	3300012509	Soil	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPANWHKLSSAELSALSWNT*
Ga0157330_10054162	3300012514	Soil	MTNPRLCFVDPLGTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPANWHKLSSDELTALSWNT*
Ga0157283_103958211	3300012907	Soil	MTNPRLCFVDSVGTDWRIYEVASVNVPAPRGRNCLIFESAQAVRRVWNYPSNWHKLSSDELSAL
Ga0126375_103254401	3300012948	Tropical Forest Soil	VVSLTEANQDGVESQMTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPANWHKLSSDELTALSWNT*
Ga0164300_100939802	3300012951	Soil	LGTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPPNWHKLSSDELSALSWNT*
Ga0164300_106893701	3300012951	Soil	MGTDWRIYEVASVNVPAPRGSNCLIFESANAVRRVWNYPNNWHNLSSDELSALSWNT*
Ga0164302_104429581	3300012961	Soil	MGTDWRIYEVASVNVPAPRGSNCLIFESAKAVRRVWNYPNNWHNLSSDELSALSWNT*
Ga0164302_105838211	3300012961	Soil	ADAVVAGRRKPTRKESNAGMTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESTQAVRRVWNYPNNWHNLTSDELSALSWNT*
Ga0157373_105560581	3300013100	Corn Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAEAVRRVWNYPVNWQKLSSAELSALSWNT*
Ga0157371_111196301	3300013102	Corn Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASVNVPAPRGSNCLIFESAQAVRRVWNYPVNWQKLSSAELSALSWNT*
Ga0173478_107007281	3300015201	Soil	GTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPANWHKLSSDELTALSWNT*
Ga0182005_11215682	3300015265	Rhizosphere	NANQDGVERLMTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPVNWQKLSSAELSALSWNT*
Ga0132258_100647817	3300015371	Arabidopsis Rhizosphere	MGTDWRIYEVASANVPAPRGSNCLIFESAKAVRRVWNYPTNWHNLSSDELSALSWNT*
Ga0132258_104262134	3300015371	Arabidopsis Rhizosphere	MGVESLMTNPRLCFVDSLGTDWRIYEVASVNVPAPRGSNCLIFESAQAVRRVWNYPSNWHRLSTDELSALSWNT*
Ga0132256_1001556912	3300015372	Arabidopsis Rhizosphere	MTNPRLCFVDPLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSAELSALSWNT*
Ga0132257_1001031562	3300015373	Arabidopsis Rhizosphere	MTNPRLCFVDSMGTDWRIYEVASANVPAPRGSNCLIFESAKAVRRVWNYPTNWHNLSSDELSALSWNT*
Ga0132257_1002253553	3300015373	Arabidopsis Rhizosphere	VVLGLTEANQDGVESQMTNPRLCFVDSLGTDWRIYEVASVNVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSAELSALSWNT*
Ga0132255_1005431861	3300015374	Arabidopsis Rhizosphere	GPPEGVERRMTNPRLCFVDSLGTDWRIYEVASANVPAPRGRNCLIFESSQAVRRVWNYPNNWHNLTSDELSALSWNT*
Ga0132255_1018438501	3300015374	Arabidopsis Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASVNVPAPRGSNCLIFESAQAVRRVWNYPSNWHRLSTDELSALSWNT*
Ga0132255_1019007392	3300015374	Arabidopsis Rhizosphere	MTNPRLCFVDSLGTDWRIYEVALVNVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSAELSALSWNT*
Ga0184611_12173502	3300018067	Groundwater Sediment	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGRNCLIFESSQAVRRVWNYPNNWHNLTSDELSALSWNT
Ga0190265_134361391	3300018422	Soil	VVAADENTDAGADRLMTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESAQAVRRVWNYPANWHKLSSDELSALSWNT
Ga0190270_102211792	3300018469	Soil	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGRNCLIFESSQAVRRVWNYPSNWHNLSSDELSALSWNT
Ga0190274_100795912	3300018476	Soil	MTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESAQAVRRVWNYPSNWHKLSSDELSALSWNT
Ga0190274_106049282	3300018476	Soil	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGRNCLIFESSQAVRRVWNYPSNWLNLSSDELSALSWNT
Ga0207697_100219631	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPANWHKLSSDELTALSWNT
Ga0207697_100885312	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MTNPRLCFVDSVGTDWRIYEVASVNVPAPRGRNCLIFESAQAVRRVWNYPSNWHKLSSDELSALSWNT
Ga0207656_100606343	3300025321	Corn Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPVNWQKLSSAELSALSWNT
Ga0207713_12431931	3300025735	Switchgrass Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPVNWQKLSSAELSALSWN
Ga0207647_102373881	3300025904	Corn Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGRNCLIFESAQAVRRVWNYPSNWHKLSSDELSALSWNT
Ga0207643_106080092	3300025908	Miscanthus Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGRNCLIFESSQAVRRVWNYPNNWHNLTSDELS
Ga0207690_102920851	3300025932	Corn Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASVNVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSAELSALSWNT
Ga0207679_100500363	3300025945	Corn Rhizosphere	MTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESTQAVRRVWNYPNNWHNLTSDELSALSWNT
Ga0207667_107626531	3300025949	Corn Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPANWQKL
Ga0207651_105521591	3300025960	Switchgrass Rhizosphere	SLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPVNWQKLSSAELSALSWNT
Ga0207651_107513642	3300025960	Switchgrass Rhizosphere	NANQDGVERLMTNPRLCFVDSLGTDWRIYEVASVNVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSAELSALSWNT
Ga0207678_106917661	3300026067	Corn Rhizosphere	NAGMTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESTQAVRRVWNYPNNWHNLTSDELSALSWNT
Ga0207641_118557691	3300026088	Switchgrass Rhizosphere	GVERLMTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPVNWQKLSSAELSALSWNT
Ga0207648_111777081	3300026089	Miscanthus Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASVNVPAPRGSNCLIFESTQAVRRVWNYPANWHKLSSAELSALSWNT
Ga0207674_108243901	3300026116	Corn Rhizosphere	TDWRIYEVASANVPAPRGRNCLIFESSQAVRRVWNYPNNWHNLTSDELSALSWNT
Ga0207698_105834911	3300026142	Corn Rhizosphere	QTNANQDGVERLMTNPRLCFVDSLGTDWRIYEVASVNVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSAELSALSWNT
Ga0209818_10051822	3300027637	Agricultural Soil	MTNPRRCFVDSLGTDWRIYEVASSNVPAPRGRNCLIFESTQAVRRVWNYPANWDMLSTDELSALSWNT
Ga0209811_101704661	3300027821	Surface Soil	MTNPRLCFVDSMGTDWRIYEVASVNVPAPRGSNCLIFESAKAVRRVWNYPNNWHNLSSDELSALSWNT
Ga0209481_101121481	3300027880	Populus Rhizosphere	DSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSAELSALSWNT
Ga0209481_101262182	3300027880	Populus Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASVNVPAPRGRNCLIFESAQAVRRVWNYPANWHNLSSDELSALSWNT
Ga0209481_103523501	3300027880	Populus Rhizosphere	MPPSAADPVTQKGVESRMTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESAQAVRRVWNYPSNWHKLSSDELSALSWNT
Ga0209382_100259366	3300027909	Populus Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASTNVPAPRGRNCLIFESTQAVRRVWNYPSNWEHLSTDELSALSWNI
Ga0209382_100284792	3300027909	Populus Rhizosphere	MTNPRRCFVDSLGTDWRIYEVASNNVPAPRGRNCLIFESTQAVRRVWNYPANWEHLSIDELSALSWNT
Ga0209382_106753311	3300027909	Populus Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGRNCLIFESAQAVRRVWNYPSNWHNLSSDELSALSWNT
Ga0268266_101773893	3300028379	Switchgrass Rhizosphere	RGLLEGVERRMTNPRLCFVDSLGTDWRIYEVASANVPAPRGRNCLIFESSQAVRRVWNYPNNWHNLTSDELSALSWNT
Ga0268266_102591502	3300028379	Switchgrass Rhizosphere	MTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESAQAVRRVWNYPNNWTHLSSDELSALSWNT
Ga0268266_108109281	3300028379	Switchgrass Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAEAVRRVWNYPVNWQKLSSAELSALSWNT
Ga0268265_121550911	3300028380	Switchgrass Rhizosphere	MTNPRLCFVDSVGTDWRIYEVASINVPAPRGRNCLIFESSQAVRRVWNYPSNWHCLSSDELSALSWNT
Ga0307405_102433042	3300031731	Rhizosphere	MTNPRLCFVDSVGTDWRIYEVASSNVPAPRGHNCLIFESSQAVRRVWNYPSNWDRLSSDELSALSWNT
Ga0307468_1017538151	3300031740	Hardwood Forest Soil	MTNPRLCFVDPLGTDWRIYEVASVNVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSAELSALSWNT
Ga0307413_102993461	3300031824	Rhizosphere	MTNPRLCFVDSVGTDWRIYEVASVNVPAPRGRNCLIFESAQAVRRVWNYPANWHNLSSDELSALSWNT
(restricted) Ga0255338_1000191145	3300031825	Sandy Soil	MTNPRLCFIDSLGTDWRIYEVASANVPAPRGRNCLIFESSQAVRRVWNYPANWHKLSTDELSALSWNT
Ga0310893_105683941	3300031892	Soil	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSAELSALSWNT
Ga0307407_107294561	3300031903	Rhizosphere	DARLVKHEGVESQMTNPRLCFVDSVGTDWRIYEVASSNVPAPRGHNCLIFESSQAVRRVWNYPSNWDSLSSDELSALSWNT
Ga0307412_101769112	3300031911	Rhizosphere	MTNPRLCFVDSVGTDWRIYEVASANVPAPRGHNCLIFESSQAVRRVWNYPSNWDRLSSDELSALSWNT
Ga0308175_1001025244	3300031938	Soil	MTNPRLCFVDPLGTDWRIYEVASANVPAPRGSNCLIFESSQAVRRVWNYPANWQKLSSAELSALSWNT
Ga0308175_1009791841	3300031938	Soil	MTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESTQAVRRVWNYPNNWHNLTSDELSALSWN
Ga0310899_106620691	3300032017	Soil	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGSNCLIFESTQAVRRVWNYPANWHKLSSDELTAL
Ga0307415_1002536261	3300032126	Rhizosphere	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGRNCLIFESAQAVRRVWNYPNNWINLSSDELSALSWNT
Ga0310810_100879721	3300033412	Soil	LGQTNANQDGVERLMTNPRLCFVDSLGTDWRIYEVASVNVPAPRGSNCLIFESAQAVRRVWNYPANWHKLSSAELSALSWNT
Ga0310810_113086882	3300033412	Soil	MTNPRLCFVDSVGTDWRIYEVASANVPAPRGRNCLIFESAQAVRRVWNYPNNWFKLSSDELSALSWNT
Ga0364925_0123436_632_838	3300034147	Sediment	MTNPRLCFVDSLGTDWRIYEVASANVPAPRGRNCLIFESTQAVRRVWNYPSNWHNLSSDELSALSWNT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters