NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F040896

Metagenome / Metatranscriptome Family F040896

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F040896
Family Type Metagenome / Metatranscriptome
Number of Sequences 161
Average Sequence Length 47 residues
Representative Sequence DGSPGRGGSITVTYDPQVKPYLATIHLSNQGGPKPVFTEEPVAPLW
Number of Associated Samples 141
Number of Associated Scaffolds 161

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 14.06 %
% of genes near scaffold ends (potentially truncated) 33.54 %
% of genes from short scaffolds (< 2000 bps) 33.54 %
Associated GOLD sequencing projects 132
AlphaFold2 3D model prediction Yes
3D model pTM-score0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (67.081 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil
(14.286 % of family members)
Environment Ontology (ENVO) Unclassified
(18.634 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(58.385 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 12.16%    β-sheet: 16.22%    Coil/Unstructured: 71.62%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.57
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 161 Family Scaffolds
PF00202Aminotran_3 8.07
PF13561adh_short_C2 3.73
PF02627CMD 3.11
PF03976PPK2 2.48
PF12838Fer4_7 2.48
PF01649Ribosomal_S20p 2.48
PF00291PALP 2.48
PF13620CarboxypepD_reg 1.86
PF01904DUF72 1.86
PF02517Rce1-like 1.86
PF00069Pkinase 1.86
PF00383dCMP_cyt_deam_1 1.24
PF00486Trans_reg_C 1.24
PF08922DUF1905 1.24
PF14321DUF4382 0.62
PF02511Thy1 0.62
PF11008DUF2846 0.62
PF03551PadR 0.62
PF01954AF2212-like 0.62
PF07859Abhydrolase_3 0.62
PF11790Glyco_hydro_cc 0.62
PF01738DLH 0.62
PF01494FAD_binding_3 0.62
PF02371Transposase_20 0.62
PF04191PEMT 0.62
PF08388GIIM 0.62
PF08450SGL 0.62
PF08327AHSA1 0.62
PF00589Phage_integrase 0.62
PF01933CofD 0.62
PF13414TPR_11 0.62
PF02749QRPTase_N 0.62
PF00313CSD 0.62
PF03169OPT 0.62
PF16113ECH_2 0.62
PF01757Acyl_transf_3 0.62
PF14534DUF4440 0.62
PF00480ROK 0.62
PF07499RuvA_C 0.62
PF10282Lactonase 0.62
PF01872RibD_C 0.62
PF12276DUF3617 0.62
PF05345He_PIG 0.62
PF08241Methyltransf_11 0.62
PF08240ADH_N 0.62
PF11950DUF3467 0.62
PF13442Cytochrome_CBB3 0.62
PF02899Phage_int_SAM_1 0.62
PF13491FtsK_4TM 0.62
PF06827zf-FPG_IleRS 0.62
PF08245Mur_ligase_M 0.62

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 161 Family Scaffolds
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 7.45
COG0599Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase familyGeneral function prediction only [R] 3.11
COG2128Alkylhydroperoxidase family enzyme, contains CxxC motifInorganic ion transport and metabolism [P] 3.11
COG0268Ribosomal protein S20Translation, ribosomal structure and biogenesis [J] 2.48
COG2326Polyphosphate kinase 2, PPK2 familyEnergy production and conversion [C] 2.48
COG1266Membrane protease YdiL, CAAX protease familyPosttranslational modification, protein turnover, chaperones [O] 1.86
COG1801Sugar isomerase-related protein YecE, UPF0759/DUF72 familyGeneral function prediction only [R] 1.86
COG4449Predicted protease, Abi (CAAX) familyGeneral function prediction only [R] 1.86
COG06542-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductasesEnergy production and conversion [C] 1.24
COG1940Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domainTranscription [K] 1.24
COG0157Nicotinate-nucleotide pyrophosphorylaseCoenzyme transport and metabolism [H] 0.62
COG0262Dihydrofolate reductaseCoenzyme transport and metabolism [H] 0.62
COG0391Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 familyCarbohydrate transport and metabolism [G] 0.62
COG0578Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 0.62
COG0632Holliday junction resolvasome RuvABC DNA-binding subunitReplication, recombination and repair [L] 0.62
COG0644Dehydrogenase (flavoprotein)Energy production and conversion [C] 0.62
COG0657Acetyl esterase/lipaseLipid transport and metabolism [I] 0.62
COG0665Glycine/D-amino acid oxidase (deaminating)Amino acid transport and metabolism [E] 0.62
COG1297Predicted oligopeptide transporter, OPT familyGeneral function prediction only [R] 0.62
COG1351Thymidylate synthase ThyX, FAD-dependent familyNucleotide transport and metabolism [F] 0.62
COG1488Nicotinic acid phosphoribosyltransferaseCoenzyme transport and metabolism [H] 0.62
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 0.62
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 0.62
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 0.62
COG1985Pyrimidine reductase, riboflavin biosynthesisCoenzyme transport and metabolism [H] 0.62
COG3386Sugar lactone lactonase YvrECarbohydrate transport and metabolism [G] 0.62
COG3391DNA-binding beta-propeller fold protein YncEGeneral function prediction only [R] 0.62
COG3547TransposaseMobilome: prophages, transposons [X] 0.62
COG4973Site-specific recombinase XerCReplication, recombination and repair [L] 0.62
COG4974Site-specific recombinase XerDReplication, recombination and repair [L] 0.62

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A67.08 %
All OrganismsrootAll Organisms32.92 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001087|JGI12677J13195_1007531All Organisms → cellular organisms → Bacteria → Proteobacteria798Open in IMG/M
3300001593|JGI12635J15846_10129004Not Available1773Open in IMG/M
3300001593|JGI12635J15846_10153446All Organisms → cellular organisms → Bacteria1576Open in IMG/M
3300002245|JGIcombinedJ26739_100862346All Organisms → cellular organisms → Bacteria → Proteobacteria787Open in IMG/M
3300005530|Ga0070679_100364438All Organisms → cellular organisms → Bacteria1392Open in IMG/M
3300005538|Ga0070731_10264661Not Available1141Open in IMG/M
3300005610|Ga0070763_10973435All Organisms → cellular organisms → Bacteria → Acidobacteria507Open in IMG/M
3300005712|Ga0070764_10583377Not Available680Open in IMG/M
3300006050|Ga0075028_100027286All Organisms → cellular organisms → Bacteria2583Open in IMG/M
3300006052|Ga0075029_100299477All Organisms → cellular organisms → Bacteria1026Open in IMG/M
3300006163|Ga0070715_10222575All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium971Open in IMG/M
3300006176|Ga0070765_100273222All Organisms → cellular organisms → Bacteria → Acidobacteria1555Open in IMG/M
3300009089|Ga0099828_10569310All Organisms → cellular organisms → Bacteria1020Open in IMG/M
3300009502|Ga0114951_10644175Not Available504Open in IMG/M
3300009762|Ga0116130_1055471All Organisms → cellular organisms → Bacteria1251Open in IMG/M
3300010341|Ga0074045_10914370All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300014492|Ga0182013_10696430All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia509Open in IMG/M
3300014658|Ga0181519_10161523All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus1424Open in IMG/M
3300017995|Ga0187816_10380862All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 59-55626Open in IMG/M
3300017995|Ga0187816_10503258All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → unclassified Rhodothermaceae → Rhodothermaceae bacterium546Open in IMG/M
3300018026|Ga0187857_10456186Not Available574Open in IMG/M
3300018035|Ga0187875_10237749All Organisms → cellular organisms → Bacteria997Open in IMG/M
3300018044|Ga0187890_10221327All Organisms → cellular organisms → Bacteria → Acidobacteria1070Open in IMG/M
3300018090|Ga0187770_11206316All Organisms → cellular organisms → Bacteria612Open in IMG/M
3300019787|Ga0182031_1127566All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300020583|Ga0210401_11642296All Organisms → cellular organisms → Bacteria → Acidobacteria500Open in IMG/M
3300021086|Ga0179596_10068963All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1528Open in IMG/M
3300021181|Ga0210388_10425888All Organisms → cellular organisms → Bacteria1166Open in IMG/M
3300021404|Ga0210389_10642537All Organisms → cellular organisms → Bacteria833Open in IMG/M
3300021433|Ga0210391_10150939All Organisms → cellular organisms → Bacteria1829Open in IMG/M
3300021433|Ga0210391_10248184Not Available1397Open in IMG/M
3300021475|Ga0210392_11419965All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia519Open in IMG/M
3300021477|Ga0210398_10002388All Organisms → cellular organisms → Bacteria18382Open in IMG/M
3300022555|Ga0212088_10871130Not Available509Open in IMG/M
3300022557|Ga0212123_10641452All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300023255|Ga0224547_1002272All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2337Open in IMG/M
3300025406|Ga0208035_1043589Not Available700Open in IMG/M
3300027562|Ga0209735_1098307All Organisms → cellular organisms → Bacteria637Open in IMG/M
3300027667|Ga0209009_1071690All Organisms → cellular organisms → Bacteria872Open in IMG/M
3300027692|Ga0209530_1050437All Organisms → cellular organisms → Bacteria1218Open in IMG/M
3300027696|Ga0208696_1023471All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis2299Open in IMG/M
3300027869|Ga0209579_10082938All Organisms → cellular organisms → Bacteria1697Open in IMG/M
3300027908|Ga0209006_10018351All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis6346Open in IMG/M
3300028748|Ga0302156_10339184All Organisms → cellular organisms → Bacteria666Open in IMG/M
3300028788|Ga0302189_10172003Not Available922Open in IMG/M
3300028806|Ga0302221_10109270All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1225Open in IMG/M
3300028871|Ga0302230_10451980All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300029917|Ga0311326_10543250All Organisms → cellular organisms → Bacteria564Open in IMG/M
3300029951|Ga0311371_10291005All Organisms → cellular organisms → Bacteria → Acidobacteria2313Open in IMG/M
3300029954|Ga0311331_11539850Not Available541Open in IMG/M
3300030114|Ga0311333_11310469All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300030617|Ga0311356_10302271All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1603Open in IMG/M
3300030618|Ga0311354_10800571All Organisms → cellular organisms → Bacteria889Open in IMG/M
3300030759|Ga0265745_1016151All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300031090|Ga0265760_10244912All Organisms → cellular organisms → Bacteria619Open in IMG/M
3300031715|Ga0307476_11284701All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii534Open in IMG/M
3300032160|Ga0311301_12820039All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300032205|Ga0307472_100082005All Organisms → cellular organisms → Bacteria2150Open in IMG/M
3300032829|Ga0335070_10014062All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis9326Open in IMG/M
3300032892|Ga0335081_10975421All Organisms → cellular organisms → Bacteria → Acidobacteria990Open in IMG/M
3300032893|Ga0335069_10189986All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2511Open in IMG/M
3300032897|Ga0335071_10009054All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis10198Open in IMG/M
3300033807|Ga0314866_027920All Organisms → cellular organisms → Bacteria858Open in IMG/M
3300033983|Ga0371488_0503092Not Available547Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil14.29%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil14.29%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog7.45%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa5.59%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil4.97%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil4.35%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland3.73%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds3.73%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment3.11%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.11%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog2.48%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.48%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil2.48%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen2.48%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.86%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil1.86%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.24%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.24%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.24%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.24%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog1.24%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil1.24%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.24%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.24%
Freshwater Lake HypolimnionEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion0.62%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater0.62%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.62%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.62%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.62%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.62%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.62%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.62%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland0.62%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.62%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.62%
Thawing PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost0.62%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen0.62%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.62%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.62%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.62%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.62%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.62%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.62%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001087Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3EnvironmentalOpen in IMG/M
3300001546Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004268Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBioEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005530Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaGEnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300005993Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046EnvironmentalOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006086Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009502Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaGEnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300009672Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaGEnvironmentalOpen in IMG/M
3300009683Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaGEnvironmentalOpen in IMG/M
3300009762Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40EnvironmentalOpen in IMG/M
3300010341Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2EnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300014151Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaGEnvironmentalOpen in IMG/M
3300014492Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300014658Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaGEnvironmentalOpen in IMG/M
3300014839Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016698Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017930Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017988Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaGEnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018002Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40EnvironmentalOpen in IMG/M
3300018026Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100EnvironmentalOpen in IMG/M
3300018035Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10EnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300018090Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300019242Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019787Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300019889Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300022555Alinen_combined assemblyEnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300022830Peat soil microbial communities from Stordalen Mire, Sweden - IR.F.S.T-25EnvironmentalOpen in IMG/M
3300023255Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 10-14EnvironmentalOpen in IMG/M
3300024290Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08EnvironmentalOpen in IMG/M
3300025406Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025625Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300026281Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)EnvironmentalOpen in IMG/M
3300026490Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-AEnvironmentalOpen in IMG/M
3300027535Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027562Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027591Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027633Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027654Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027660Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027667Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027674Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027692Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027696Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027737Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027745Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2MEnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028268Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25.v5EnvironmentalOpen in IMG/M
3300028565Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_3EnvironmentalOpen in IMG/M
3300028748Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2EnvironmentalOpen in IMG/M
3300028788Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_2EnvironmentalOpen in IMG/M
3300028806Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1EnvironmentalOpen in IMG/M
3300028871Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_1EnvironmentalOpen in IMG/M
3300029908II_Bog_E1 coassemblyEnvironmentalOpen in IMG/M
3300029917I_Bog_E1 coassemblyEnvironmentalOpen in IMG/M
3300029919Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_2EnvironmentalOpen in IMG/M
3300029951III_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300029953II_Bog_E3 coassemblyEnvironmentalOpen in IMG/M
3300029954I_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029955II_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029982Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_1EnvironmentalOpen in IMG/M
3300029987I_Fen_E3 coassemblyEnvironmentalOpen in IMG/M
3300029990I_Fen_N2 coassemblyEnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030114I_Fen_E2 coassemblyEnvironmentalOpen in IMG/M
3300030491Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_3EnvironmentalOpen in IMG/M
3300030519Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_3EnvironmentalOpen in IMG/M
3300030524II_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300030617II_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030759Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031090Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031261Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1EnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300032897Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5EnvironmentalOpen in IMG/M
3300033807Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_10EnvironmentalOpen in IMG/M
3300033983Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fractionEnvironmentalOpen in IMG/M
3300034965Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_04D_17EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12677J13195_100243113300001087Forest SoilITVTYDPQAKPYLSAIHLENVGGPPPVFQQQPVAPLW*
JGI12677J13195_100753113300001087Forest SoilSDGRNGFDGSPGRGGSITVTYDPQAKPYLNAIHLSSVGGPAPVFQEAPVAPLW*
JGI12659J15293_1001477943300001546Forest SoilRGGSISVTYDPQVKTYLNIXHLSNKGGPAPLFNEAPVAPLW*
JGI12635J15846_1012900413300001593Forest SoilGSDGRSGFDGSPGKGGSITVTYDPQVKPFLGTIRLSNKGGPPPVFKEEPVAALW*
JGI12635J15846_1015344613300001593Forest SoilSDGRSGSDGPQGRGGSITVTYDPQAKPFLNMIRLSNGGGPKPMFKEEALAPLW*
JGI12635J15846_1024256313300001593Forest SoilTYDPQAKPFLTVIHLSNQGGPAPVFKEEHVAPLW*
JGI12053J15887_1037172523300001661Forest SoilDGPMGKAGTITVTFDPQAKPYLSAIHLSNHGGPTPVFQEEPVTALW*
JGIcombinedJ26739_10086234633300002245Forest SoilRNGFDGSPGRGGSITVTYDPQAKPYLNAIHLSSVGGPAPVFQEAPVAPLW*
JGIcombinedJ26739_10101446013300002245Forest SoilPGRGASITVTYDPQAKPFLNVIRFSNQGGPKPVFREEKVPPLW*
JGIcombinedJ26739_10141796923300002245Forest SoilTVTYDPQSKPFLVAIHLSNRGGPPPVFKEEPVAPLW*
JGIcombinedJ26739_10172333413300002245Forest SoilTVTYDPQAKPFLTALHLSNIGGPKPVFQEEAVAPLW*
Ga0066398_1015213513300004268Tropical Forest SoilGGKITVTYDPDAGPFLSAIRLSNAGGPRPVYLEQPVAALW*
Ga0070708_10106545923300005445Corn, Switchgrass And Miscanthus RhizosphereSSGSGGSITVTYDPAAAPYLGVIHLSSRGGPAPVFNEEPVAPLW*
Ga0070679_10036443813300005530Corn RhizosphereGSNGSDGRNGFDGSPGRGGSITVTYDPQAKPFLGTIHLSNRNGPPPLFREVPVAAPW*
Ga0070731_1026466123300005538Surface SoilMDGRSGWDGSQGRGGAITMTYDPQAKPYLNVIHLSSQNGPAPVLKEEVVTALW*
Ga0070763_1097343513300005610SoilDGRNGSDGSPGRGGTMTVTYDPQVKPFLTAIHLSNVGGPAPTFKEEPVAPLW*
Ga0070764_1058337713300005712SoilGSDGRNGFDGPPGKGGSITVTYDPQAKPFLATIHLSNLGGPPPVFKEAPVAPLW*
Ga0070766_1056152213300005921SoilVTYDPQAKPFLTAIHLSNQGGPAPVFKEEPVASLW*
Ga0080027_1016420613300005993Prmafrost SoilPGEGGGITVTYDPQAKPFLSAIKLSSWGGPSPVFREEAVSPQW*
Ga0075023_10005280523300006041WatershedsFDGSPGRGGTITVTYDPQAKPFLTAIHISNQGGPSPVFKEEPMDSLW*
Ga0075028_10002728663300006050WatershedsGRNGWDGSSGRGGNITVTYDPAAAPYLGAIHLSNRGGPAPVFNEEPVAPLW*
Ga0075029_10009704613300006052WatershedsSGFDGSPGRGGSITVTYDPQVKPYLTTIGLSNKGGPPPVFKEEPVAALW*
Ga0075029_10029947733300006052WatershedsSGRSGSDGRPGRGGSIVVIYDPQAKPYLNIIHLSNQGGPAPVFKQEPVAPLW*
Ga0075019_1040505013300006086WatershedsPGRGGSIVVIYDPQAKPYLNIIHLSNQGGPAPVFKQEPVAPLW*
Ga0070715_1022257523300006163Corn, Switchgrass And Miscanthus RhizosphereGRDGLDGSSGRGGSITVTYDPQAKPFLGVIRLSNPGGPRPVFKEQAVAPLW*
Ga0075014_10003297533300006174WatershedsGPMGRGGSITVTYDPQAKQYLVAFHLSSRNGPAAVFKEASVAPLW*
Ga0070765_10027322213300006176SoilGRNGSDGSPGRGGTITVTYDPQVKPFLAAIHLSNSGGPAPTFKEEPVAPLW*
Ga0066665_1060492313300006796SoilIRVTYDPAAKLFLDAIHLSNWNGPKPTFDEQPVAPMW*
Ga0066665_1065369413300006796SoilRGGSITVTYDPQVKPFLNIIHLSNQRGSPPVFREEPVAPLW*
Ga0075426_1147459323300006903Populus RhizosphereFDGSTGRGGSITVTYDPQAKPFLGTIHLSNRNGPPPLFREVPVAAPW*
Ga0099828_1056931013300009089Vadose Zone SoilDGLSGHDGRTGWPAKGGSLTVTYDPQVKPFLTVIHLSNQGGPPPVFKEEPVAPLW*
Ga0066709_10349935813300009137Grasslands SoilSGTGGSITVTYDPRAKPFLHVIHLQGGFGPVFKEEPVGPLW*
Ga0105242_1166093813300009176Miscanthus RhizosphereTGRGGSITVTYDPQARPFLGAIHLSNQNGPAPVYKEDPVAALW*
Ga0114951_1064417523300009502FreshwaterSGSNGLDGRNGFDGSPGRGGSITVTYDSQVKPYLAVIHLSSQNGPKPVLQEAPVAPLW*
Ga0116222_125087113300009521Peatlands SoilGGSITVTYDPQAKPFLAAIHLSNQGGPRPVFKEEPVAPLW*
Ga0116215_107792513300009672Peatlands SoilNGFDGSPGKGGSITVTYDPQAKPFLAAIHLSNQGGPRPVFKEEPVAPLW*
Ga0116224_1005700133300009683Peatlands SoilNGFDGSPGRGGSITVTYDPQVKPLLATIRLSNLGGPKPVFNEAPVAPLW*
Ga0116130_105547113300009762PeatlandGRNGSDGSPGKGGSITVTYDPQAKPFLAVIRLSNRGGPPPVFMEEPVAPLW*
Ga0074045_1091437023300010341Bog Forest SoilPNGSDGRAGSDGRDGWDGPQGRGGSITVTYDPQAKPFLGLIHLSNKNGPPPVFKEEQVAPLW*
Ga0137399_1140098723300012203Vadose Zone SoilSITVTYDPGVAPYLGVIHLSNRGGPAPVFNEEPVAPLW*
Ga0137360_1025841343300012361Vadose Zone SoilITVTYDPAVAPYLGVIHLSNRGGPAPVFNEEPVAPLW*
Ga0137358_1037940013300012582Vadose Zone SoilLNGHDGLRGSDGKGGSITVTYDPAVKSYLGAIRLSHQNGPAPVFREATVGALW*
Ga0137404_1001780713300012929Vadose Zone SoilSITVTYDPAVAPYLGVIHLSNRGGSAPVFNEEPVAPLW*
Ga0164298_1106941113300012955SoilITVIYDPQARPYLNMLRLSNEGGPKPVFREQAVGPLW*
Ga0157378_1048221623300013297Miscanthus RhizosphereGNGRGGLITVTYDPSVKPYLGVLHFSSQNGPAPVFREVPVPALW*
Ga0181539_106325143300014151BogGRGGLITVTYDPQVKRYLAAIHLSSQNGPKPVMQEAPVAPLW*
Ga0182013_1069643013300014492BogMDGRSGQDGMNGPSGSGGSITVTYDPQVKPYLTAIHLSNQGGPKPVFQEAPVAPLW*
Ga0182024_1223716623300014501PermafrostIAVTYDPQVKPWLAAIKLSNPGGPAPALTESAVAPLW*
Ga0181522_1049394813300014657BogLITVTYDPQVKPYLSTLRLSSQNGPHPVYQEQTVAPLW*
Ga0181519_1016152313300014658BogDGRNGSDGSPGRGGLITVTYDPQVKPYLANLRLSSSNGPKPVFNEAPVAPLW*
Ga0182027_1211989023300014839FenGGLITVTYDPQVKPYLANLIFSSENGPKPVLQQAPVAPLW*
Ga0137412_1009335233300015242Vadose Zone SoilITVIYDPQIKPFLAVIHLSNPGGPAPVFKEEAVAPLW*
Ga0137403_1122283113300015264Vadose Zone SoilRGGSITVTYDPEVKPYLSTIRLSNKGGPPPVFKEEAVAALW*
Ga0182035_1181837513300016341SoilGGRITVTYDPLAKPYLGLLHLSSAYGPAPTFNEQPVASLW
Ga0181503_134890423300016698PeatlandMNGSDGPDGRGGSITVTYDSQLKPYLAMIHLSNRGGPKPVFTEATVAPLW
Ga0187825_1011061433300017930Freshwater SedimentDGPPGNGGSITVTYDPSTKPYLSAIHLSSKNGPSPTFQQQYVAPLW
Ga0187819_1067980923300017943Freshwater SedimentGGNITVTYDPQAKPYLSMIHLSNQNGPRPVFKEEPVAPLW
Ga0181520_1101204023300017988BogVLYDPQVKPFLSTIVLSNQGGPKPIFQEQPIPPLW
Ga0187816_1038086213300017995Freshwater SedimentNSRDGTDGRNAFDGPQGRGGSITVTYDPQAKPYLNMIHLSNRNGPKPVFQEQTLAPLW
Ga0187816_1050325823300017995Freshwater SedimentGRDGSDGHSGSDGSPGKGGSITVTYDPQTKPYLAVIHLSNSNGPKPVFMEEPVAPLW
Ga0187816_1057435723300017995Freshwater SedimentVTYDPGAKPFLNMIHLSNKNGPAPVVKEEPVAPLW
Ga0187868_127082313300018002PeatlandVTYDPQVKPYLAAIHLSNQGGPKPVFQEQTVAPLW
Ga0187857_1045618613300018026PeatlandNGFDGSPGRGGSITVTYDPQAQPLLAAVHLSNRGGPKPVFKKEPVAPLW
Ga0187875_1023774933300018035PeatlandDGSDGRDGFSGPDGRGGSITVLYDPQVKPFLSTIVLSNQGGPKPIFQEQPIPPLW
Ga0187890_1022132713300018044PeatlandSSGNDGRSGSQGRGGLITVTYDPQVKPYLSTIRLSSQNGPRPVYKEQAVAPLW
Ga0187770_1120631623300018090Tropical PeatlandDGLDGHNGFDGPQGRGGSISVTYDPQAKPYLNMIHLSNRNGPTPVFKEQPVAPLW
Ga0181502_126698813300019242PeatlandPGRGGLITVTYDPQVKPYLANLRLSSSNGPKPVFNEAPVAPLW
Ga0182031_112756623300019787BogSNGSDGRSGFDGSPGRGGSITVTYDPLVKPFLGTIHLSNQNGPPPVFKEEPVAALW
Ga0193743_104660513300019889SoilNDGTQGRAGSITVTYDPQAKPFLAAIHLPNQGGPPPIFTEQSVASLW
Ga0210403_1003440643300020580SoilGGSITVTYDPQVKPFLGTIRLSNKGGPPPVFKEQPVAALW
Ga0210401_1164229613300020583SoilSGRNGFDGSPGRGGSIAVIYDPQAKPFLTAIHLSNQGGPPPVFQEEPVAPLW
Ga0215015_1016398823300021046SoilGFNGSPGKGGRITVTYDPQAKPFLAAIQLSHQYGPDPVFREEPVAPLW
Ga0179596_1006896313300021086Vadose Zone SoilRDGQSGHNGQDGSRGRGGSITVTYDPQAKPFLAAIHLSNRDGSSPVWNEEQVGPIW
Ga0210406_1098644923300021168SoilFDGSQGRGGSITVTYDPQAKPFLTGIHLSNQGGPQPVFREEPVAPLW
Ga0210405_1118031223300021171SoilFDGSAGRGGSITVTYDPQAKPFLNAIHLTNRGGPSPVFKEEPVAPLW
Ga0210408_1040160113300021178SoilSDGLEGWRGSGGKITVTYDPQAKPFLSAIRLSNPGGPAPVFKEEPVAPLW
Ga0210408_1047128513300021178SoilITVTYDPAVARYLGVIHLSNRGGPAPVFNEEHVAPLW
Ga0210408_1132390313300021178SoilGSPGKGGSISVTYDPQVKPFLGTIRLSNKGGPPPVFKEEPVAALW
Ga0210388_1001141713300021181SoilIITVTYDPQAKLYLKSIHLSNRGGPPPIFKEEPVTPLW
Ga0210388_1042588813300021181SoilRKGFDGSPGRGGSISVTYDPQVKTYLNIIHLSNKGGPAPVFNEAPVAPLW
Ga0210385_1157329313300021402SoilKGGTITVTYDPQVKAYLTLIHLSDSGGPRPVFNEEAVAPLW
Ga0210397_1115138023300021403SoilFDGSSGRGGAIFVTYDPQAKPFLNAIRLSNQGGPAPVFTEEPVGPLW
Ga0210389_1064253723300021404SoilGRNGFDGSPGRAGSITVTYDPQVKPYLNSIHLENKGGPAPVFNEAPVAPLW
Ga0210386_1136668313300021406SoilGSITVTYDPQVKPYLNIIHLSNKGAPAPVFNEAPVAPLW
Ga0210383_1164175213300021407SoilITVTYDPQAKPFLAAIHLSNKGGPAPVFTEAPVPPLW
Ga0210391_1015093953300021433SoilGNAGLDGRNGFDGSMGSGGSINVTYDPQVKPYLNIIHLSNKGCPAPVFNQAPVAPLW
Ga0210391_1024818423300021433SoilSSGSSGSDGRNGFDGPPGKGGSITVTYDPQAKPFLATIHLSNQGGPPPVFKEAPVAPLW
Ga0210392_1077710823300021475SoilDGSSGNPGSITVTYDPQVKPFLAVIRLPNQGRPAPVFKEESVAPLW
Ga0210392_1141996523300021475SoilNGSDGTNGRDGNNGSEGRAGNITVTYDPQARPFLAAIHLPNQGGPSPVFTEESVAPLW
Ga0210398_10002388183300021477SoilVTYDPQVKPYLNIIHLSNKGGPTPVFNEAPVAPLW
Ga0210410_1108942723300021479SoilDGPPGKGGSITVTYDPQAKPFLATIHLSNQGGPPPVFKEAAVAPLW
Ga0210410_1178342913300021479SoilGSPGKAGSITVTYDPQVQPYLTAIRLSNKGGPAPVFKEETVAPLW
Ga0212088_1087113013300022555Freshwater Lake HypolimnionDGRNGFDGSPGRGGSITVTYDSQVKPYLAVIHLSSQNGPKPVLQEAPVAPLW
Ga0212123_1064145223300022557Iron-Sulfur Acid SpringSGADGRNGFDGLPGKGGSITVTYDPQAKPFLTAIHLSNQGGPAPVFLEESVAALW
Ga0224515_104969213300022830SoilRNGSDGSPGKGGSITVTYDPQAKPFLAAIHLSNRGGPPPVFKEEPVAPLW
Ga0224547_100227253300023255SoilGSDGRSGFDGSPGKGGSITVTYDPQAKPYMAAIRLSNKGGPAPVFHEEPVAPLW
Ga0247667_106328713300024290SoilVTYDPQAKPFLNVIHLSNQGGPPPIFREEPIGPLW
Ga0208035_104358923300025406PeatlandLDGRNGFDGSQGRGGQITVTYDPAAKTFLPVIRLSSVNGPKPVFTEESVAPLW
Ga0208219_114115423300025625Arctic Peat SoilAGSIIVTYDPQAKPFLAAIHLSNKNGPSPVFKEEPVAPLW
Ga0209863_1009926813300026281Prmafrost SoilPGEGGGITVTYDPQAKPFLSAIKLSSWGGPSPVFREEAVSPQW
Ga0257153_103147433300026490SoilNGHDGLRGSNGKGGSITVTYDPAVKSYLGAIRLSHQNGPAPVFREATVAALW
Ga0209734_103435513300027535Forest SoilGKGGSITVTFDPQVKPFLGTIRLSNKGGPPPVFKEEPVAALW
Ga0209735_108049913300027562Forest SoilGKGGSITVTYDPQVKPFLGTIRLSNKGAPPPVFKEEPVAALW
Ga0209735_109830713300027562Forest SoilDGRSGFDGSLGKGGSITVTYDPQVKPFLGTIRLSNKGGPPPVFKEEPVAALW
Ga0209733_108086023300027591Forest SoilGKGGSITVTYDPQVKPFLGTIRLSNKGGPPPVFKEEPVAALW
Ga0208988_108851423300027633Forest SoilAGSITVAYDPQAKAFLPAIHLSNQGGPPPVFKEEPVAPLW
Ga0209799_112738313300027654Tropical Forest SoilGGKITVTYDPDAGPFLSAIRLSNAGGPRPVYLEQPVAALW
Ga0209736_103446713300027660Forest SoilGKGGSITVTYDPQVKPFLGTIRLSNRGGPPPVFKEEPVAALW
Ga0209736_104196813300027660Forest SoilSPGKGGSITVTYDPQVKPFLGTIRLSNKGSPPPVFKEEPVAALW
Ga0209009_107169013300027667Forest SoilSDGRSGFDGSPGKGGSITVTYDPQVKPFLGTIRLSNKGGPPPVFKEEPVAALW
Ga0209118_108921913300027674Forest SoilGFDGSPGKGGSITMTYDPQVKPFLGTIRLSNKGGPPPVFKEEPVAALW
Ga0209530_105043713300027692Forest SoilGLDGRNGFDGSPGKGGSITVIYDPQVEPYLNIIHLSNKGGPAPVFNEAPVAPLW
Ga0208696_102347123300027696Peatlands SoilMNGSDGRNGFDGSPGRGGSITVTYDPQAQPFLAAIHLSNRGGPKPVFKEEPVAPLW
Ga0209038_1021316813300027737Bog Forest SoilVTYDPAAKPFLVAIHLSSKNGPAPVFKEEPVAPLW
Ga0209908_1017080813300027745Thawing PermafrostLNGPSGRGGSITITYEPQVKPYLTDIHLSNQGGPKSVFKEEPVAPLW
Ga0209579_1008293823300027869Surface SoilNGSDGRSGLDGRDGMSGQPGSGGLITVTYDPQVKPYQSVLHLSSWNGPKPVYTEQPVAALWQAN
Ga0209624_1083481413300027895Forest SoilDGSDGSPGRAGEITVTYDPKAKPFLAAINLSNPGGPSPVLTEESVGPLW
Ga0209415_1024451013300027905Peatlands SoilDGSPGRGGSITVTYDPQAKPFLAAIRLSNKGGPTPVFQEEPVAPLW
Ga0209006_1001835113300027908Forest SoilDGASGRNGFDGSPGRGGSITVRYDPQAKPFLTAIHLSSQGGPAPVFNEEPVAPLW
Ga0255348_100975213300028268SoilVTYDPLVKPFLGTIHLSNQNGPPPVFKEEPVAALW
Ga0302145_1029660713300028565BogGRSGSQGRGGLITVTYDPQVKPYLSTIRLSSQNGPHPVYQEQTVAPLW
Ga0302156_1033918423300028748BogSNGMSGSDGRNGSDGSPGRGGSITVTYDPQVKPYLSVIHLSNKGGPAPVFKEAPVAALW
Ga0302189_1017200323300028788BogGRSGSDGPPGKGGSITVTYDPQAKSYLSVIYLSNSGAPKPVFQEQAVPALW
Ga0302221_1010927023300028806PalsaAIVGGMESDGHSGSDGSFGRGGSITVTYDPQAKPYLLAIRLSNSNGPKPVFMEAPVAPLW
Ga0302230_1045198023300028871PalsaHPTAIVGGMESDGHSGSDGSFGRGGSITVTYDPQAKPYLLAIRLSNSNGPKPVFMEAPVAPLW
Ga0311341_1014322723300029908BogGSSGRGGSITVTYDPQVKPYLSVIHLSNKGGPAPVFKEAPVAALW
Ga0311326_1054325013300029917BogMSGSDGRNGSDGSPGRGGSITVTYDPQVKPYLSVIHLSNKGGPAPVFKEAPVAALW
Ga0302141_102803813300029919BogDGSPGRGGSITVTYDPQVKPYLATIHLSNQGGPKPVFTEEPVAPLW
Ga0311371_1029100543300029951PalsaDGHSGSDGSFGRGGSITVTYDPQAKPYLLAIRLSNSNGPKPVFMEAPVAPLW
Ga0311343_1020136423300029953BogDGSPGRGGSITVTYDPQVKPYLSVIHLSNKGGPAPVFKEAPVAALW
Ga0311331_1153985033300029954BogSSGQAGQDGHSGFDGSPGRPGNISVTYDAAAKPYLAILHLSNSGGPAPVFAEAPVAPLW
Ga0311342_1101246823300029955BogTVTYDPQAQPYLSVIHLSNQGGPPPVFVEAAVGPLW
Ga0302277_109106613300029982BogSITVTYDPQAEPYLDVIHLSNRNGPPPVFQEEPVAPLW
Ga0311334_10004038103300029987FenITVTYDPQVKPYLDAIHLSNSGGPKPVYYEGPVDPLW
Ga0311336_1207725613300029990FenSSGRGGKITVTYDPQVKPYLDAIHLSNSGGPKPVYYEGPVDPLW
Ga0311338_1065752623300030007PalsaGRGGSITVTYDPQVKPFLAAIHLSNIFGPKPVFIEQPVAPLW
Ga0311333_1131046923300030114FenRDGLSGHDGQSGSSGRGGIIKVTYDPEVKPYLSVLHFSSWNGPKPFLKEAPVAPLW
Ga0302211_1020430913300030491FenSGRGGKITVTYDPQVKPYLDAIHLSNSGGPKPVYYEGPVDPLW
Ga0302193_1043371123300030519BogSGPDGSGGSITITYDPQAKPYLSILRLSNRNGPRPVFIEAPVPQLW
Ga0311357_1025100933300030524PalsaTVTYDPQAKPYLLAIRLSNSNGPKPVFMEAPVAPLW
Ga0311356_1030227123300030617PalsaVAEAAPEEPEHPTAIVGGMESDGHSGSDGSFGRGGSITVTYDPQAKPYLLAIRLSNSNGPKPVFMEAPVAPLW
Ga0311354_1080057113300030618PalsaSSGSSGSDGRNGFDGSPGKAGSITVTYDPSAKPYLTAIHTSNRGGPQPVFIEAPVAALW
Ga0265745_101615123300030759SoilSSGSDGRNGFDGPPGKGGSITVTYDPQAKPFLATIHLSNQGGPPPVFKEAPVAPLW
Ga0170834_11167295523300031057Forest SoilAGRGGSITVTYDPQAKPYLAAIKLSNQGGPAPVFKEEPVAPLW
Ga0265760_1024491223300031090SoilSDGRNGFDGPPGKGGSITVTYDPQAKPFLATIHLSNQGGPPPVFKEAPVAPLW
Ga0170824_12394382013300031231Forest SoilITITYDPQAKPYLTSLHLSNKGGPAPLFKEEPVAPLW
Ga0302140_1004361313300031261BogGRGGSITVTYDPQVKPYLSVIHLSNKGGPAPVFKEAPVAALW
Ga0170820_1131628113300031446Forest SoilHDGFNGHDGLRGSHGKGGSITVPYDPAVKSYLGAIHLSHQNGPAPVFMQAMVAALW
Ga0302326_1230758613300031525PalsaSGSITVTYDPAVQPYLTAIRTQNSGAPKPTFTAAPVAPLW
Ga0302326_1238902523300031525PalsaSITVIWDPQAKPYLALLHLNNPGGPAPVFKDQAVAPLW
Ga0307476_1128470123300031715Hardwood Forest SoilSSGRNGFDGHAGKGGTITVTYDPQVKAYLTLIHLSDSGGPRPVFNEEAVAPLW
Ga0311301_1060712033300032160Peatlands SoilGGSITVTYDPQAQPFLAAIHLSNRGGPKPVFKEEPVAPLW
Ga0311301_1282003913300032160Peatlands SoilMGTPSGSNGSDAASGRDGFDGPPGKGGSITVTYDPQAKPFLAAIHLSNKGGPPPVFKE
Ga0307472_10008200543300032205Hardwood Forest SoilMDGRNGWDGSSASGGSITVTYDPAVAPYLGVIHFSNRGGPAPVFNEEPVAPLW
Ga0335070_1001406233300032829SoilMATPSGSSGSNGLDGRNGFDGHPGRGGSITVAYDPQAKPFLNVIHLSNSNGPRSVFNEEPVPPLW
Ga0335081_1097542123300032892SoilRNGFDGSPGRGGSITVTYDPAAKPFLNMIHLSAKYGPTPVFNEAAVAALW
Ga0335069_1018998623300032893SoilMATPSGSSGSNRLDGRNGFDGHPGRGGSITVAYDPQAKPFLNVIHLSNSNGPRSVFNEEPVPPLW
Ga0335071_1000905423300032897SoilMDGTDGRSGWEGSSGRGGLINVTYDPQTKPFLGVIHASSQNGPTPVFRESAVASLW
Ga0314866_027920_43_2043300033807PeatlandMDGRNGWDGPQGKGGLITVTYDPQVKPYLAAIHLSHQNGPAPVFREETVTALW
Ga0371488_0503092_2_1633300033983Peat SoilSDGRNGFDGSPGKGGSITVTYDPQVKPFLSAIRLSNRGGPPPVFKEEPVAALW
Ga0370497_0047724_683_7903300034965Untreated Peat SoilMIYDPAVQPYLSAIRLSSRNGPAPVFQQEPVAPLW

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.