Metagenome / Metatranscriptome Family F040836

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F040836
Family Type	Metagenome / Metatranscriptome
Number of Sequences	161
Average Sequence Length	52 residues
Representative Sequence	YVPIVKKPVQRQVLQKIFVPAESGEPAKFPQRRYGAGRLGRAASAGQP
Number of Associated Samples	126
Number of Associated Scaffolds	161

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	91.93 %
Associated GOLD sequencing projects	120
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (89.441 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.497 % of family members)
Environment Ontology (ENVO)	Unclassified (27.329 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.342 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 10.53% β-sheet: 0.00% Coil/Unstructured: 89.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 161 Family Scaffolds
PF03460	NIR_SIR_ferr	25.47
PF04060	FeS	5.59
PF13241	NAD_binding_7	3.73
PF14824	Sirohm_synth_M	1.24
PF01970	TctA	0.62
PF07331	TctB	0.62
PF03797	Autotransporter	0.62

COG ID	Name	Functional Category	% Frequency in 161 Family Scaffolds
COG1784	TctA family transporter	General function prediction only [R]	0.62
COG3333	TctA family transporter	General function prediction only [R]	0.62

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.44 %
Unclassified	root	N/A	10.56 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.44 %
Unclassified	root	N/A	10.56 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.44 %
Unclassified	root	N/A	10.56 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.86 %
Unclassified	root	N/A	10.56 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	42.86 %
Unclassified	root	N/A	10.56 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	24.22 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.29 %
Unclassified	root	N/A	10.56 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	24.22 %
Unclassified	root	N/A	10.56 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.73 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.62 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.62 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.62 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	24.22 %
Unclassified	root	N/A	10.56 %
Pseudorhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes	0.62 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.62 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.62 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.62 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	24.22 %
Unclassified	root	N/A	10.56 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.62 %
Bradyrhizobium nanningense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium nanningense	0.62 %
unclassified Pseudorhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → unclassified Pseudorhodoplanes	0.62 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.62 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	24.22 %
Unclassified	root	N/A	10.56 %
Pseudorhodoplanes sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → unclassified Pseudorhodoplanes → Pseudorhodoplanes sp.	0.62 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.62 %
Bradyrhizobium nanningense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium nanningense	0.62 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.62 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10194989	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300005186\|Ga0066676_11039547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300005187\|Ga0066675_10884321	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300005332\|Ga0066388_101463179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1192	Open in IMG/M
3300005332\|Ga0066388_102189669	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300005332\|Ga0066388_102795733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	891	Open in IMG/M
3300005332\|Ga0066388_103750288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	775	Open in IMG/M
3300005332\|Ga0066388_103780910	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300005332\|Ga0066388_104610913	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300005332\|Ga0066388_104986154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	675	Open in IMG/M
3300005332\|Ga0066388_105358131	Not Available	650	Open in IMG/M
3300005436\|Ga0070713_100452793	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300005436\|Ga0070713_101716237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	609	Open in IMG/M
3300005437\|Ga0070710_10011552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4365	Open in IMG/M
3300005439\|Ga0070711_101635380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	563	Open in IMG/M
3300005444\|Ga0070694_101662153	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300005451\|Ga0066681_10452113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	789	Open in IMG/M
3300005451\|Ga0066681_10698101	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300005471\|Ga0070698_101018577	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300005548\|Ga0070665_101669876	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300005555\|Ga0066692_10153329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1416	Open in IMG/M
3300005713\|Ga0066905_100751635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	841	Open in IMG/M
3300005718\|Ga0068866_11442233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300005764\|Ga0066903_101865506	Not Available	1150	Open in IMG/M
3300005764\|Ga0066903_103040260	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300005764\|Ga0066903_103827659	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300005764\|Ga0066903_105274742	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300005764\|Ga0066903_107798256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300005764\|Ga0066903_108525875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300005764\|Ga0066903_108666305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	517	Open in IMG/M
3300006046\|Ga0066652_101360019	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300006172\|Ga0075018_10025686	All Organisms → cellular organisms → Bacteria	2315	Open in IMG/M
3300006173\|Ga0070716_100400641	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300006358\|Ga0068871_100856120	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300006576\|Ga0074047_11982335	All Organisms → cellular organisms → Bacteria	1046	Open in IMG/M
3300006844\|Ga0075428_100599474	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300006845\|Ga0075421_100911063	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300006847\|Ga0075431_100597159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1088	Open in IMG/M
3300006880\|Ga0075429_100435504	All Organisms → cellular organisms → Bacteria	1149	Open in IMG/M
3300007076\|Ga0075435_100222909	All Organisms → cellular organisms → Bacteria	1601	Open in IMG/M
3300007076\|Ga0075435_100890835	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300009038\|Ga0099829_11671272	Not Available	524	Open in IMG/M
3300009090\|Ga0099827_10476263	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300009092\|Ga0105250_10348227	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300009137\|Ga0066709_103716148	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300009147\|Ga0114129_10742028	All Organisms → cellular organisms → Bacteria	1258	Open in IMG/M
3300009147\|Ga0114129_12461626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	623	Open in IMG/M
3300009147\|Ga0114129_13493128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	503	Open in IMG/M
3300009174\|Ga0105241_10532618	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300009545\|Ga0105237_10708941	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300010043\|Ga0126380_10667605	Not Available	830	Open in IMG/M
3300010046\|Ga0126384_10134380	All Organisms → cellular organisms → Bacteria	1882	Open in IMG/M
3300010046\|Ga0126384_12294785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	521	Open in IMG/M
3300010047\|Ga0126382_10686481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	857	Open in IMG/M
3300010047\|Ga0126382_11906469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	562	Open in IMG/M
3300010047\|Ga0126382_12515498	Not Available	502	Open in IMG/M
3300010321\|Ga0134067_10437989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	531	Open in IMG/M
3300010360\|Ga0126372_12087677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	614	Open in IMG/M
3300010360\|Ga0126372_12955103	Not Available	527	Open in IMG/M
3300010361\|Ga0126378_11168340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	868	Open in IMG/M
3300010361\|Ga0126378_11254993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	837	Open in IMG/M
3300010376\|Ga0126381_101600001	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300010397\|Ga0134124_12761655	Not Available	535	Open in IMG/M
3300010398\|Ga0126383_10386429	All Organisms → cellular organisms → Bacteria	1432	Open in IMG/M
3300010400\|Ga0134122_10182838	All Organisms → cellular organisms → Bacteria	1727	Open in IMG/M
3300010403\|Ga0134123_10734367	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300011269\|Ga0137392_11110434	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300011270\|Ga0137391_10843029	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300012096\|Ga0137389_11397007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	595	Open in IMG/M
3300012189\|Ga0137388_11748537	Not Available	555	Open in IMG/M
3300012201\|Ga0137365_10018160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5490	Open in IMG/M
3300012202\|Ga0137363_10547640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	974	Open in IMG/M
3300012205\|Ga0137362_11394684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	587	Open in IMG/M
3300012208\|Ga0137376_10042802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3671	Open in IMG/M
3300012353\|Ga0137367_10395334	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300012361\|Ga0137360_11350674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	615	Open in IMG/M
3300012897\|Ga0157285_10356432	Not Available	514	Open in IMG/M
3300012951\|Ga0164300_10361391	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300012971\|Ga0126369_11844507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium nanningense	693	Open in IMG/M
3300013308\|Ga0157375_10240847	All Organisms → cellular organisms → Bacteria	1969	Open in IMG/M
3300015371\|Ga0132258_10099362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	6850	Open in IMG/M
3300015374\|Ga0132255_101404402	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300015374\|Ga0132255_102440947	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300016294\|Ga0182041_10632363	Not Available	943	Open in IMG/M
3300016294\|Ga0182041_11657691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	591	Open in IMG/M
3300016341\|Ga0182035_11569580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593	Open in IMG/M
3300016357\|Ga0182032_11500920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	585	Open in IMG/M
3300016387\|Ga0182040_11403059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	591	Open in IMG/M
3300016387\|Ga0182040_11595786	Not Available	555	Open in IMG/M
3300016422\|Ga0182039_11490270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	616	Open in IMG/M
3300016422\|Ga0182039_11964638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300016445\|Ga0182038_11510241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	603	Open in IMG/M
3300018000\|Ga0184604_10375294	Not Available	507	Open in IMG/M
3300018074\|Ga0184640_10044425	All Organisms → cellular organisms → Bacteria	1817	Open in IMG/M
3300018431\|Ga0066655_10107794	All Organisms → cellular organisms → Bacteria	1574	Open in IMG/M
3300018476\|Ga0190274_11252891	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300021078\|Ga0210381_10345108	Not Available	543	Open in IMG/M
3300021384\|Ga0213876_10459604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300021560\|Ga0126371_10060567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3651	Open in IMG/M
3300021560\|Ga0126371_10795826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1092	Open in IMG/M
3300024288\|Ga0179589_10573827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300025898\|Ga0207692_11134500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	518	Open in IMG/M
3300025915\|Ga0207693_11000881	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300025915\|Ga0207693_11017002	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300025916\|Ga0207663_11573274	Not Available	529	Open in IMG/M
3300025926\|Ga0207659_10126188	All Organisms → cellular organisms → Bacteria	1968	Open in IMG/M
3300025932\|Ga0207690_10904950	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300025972\|Ga0207668_10190592	All Organisms → cellular organisms → Bacteria	1624	Open in IMG/M
3300026142\|Ga0207698_10922566	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300026329\|Ga0209375_1145916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1004	Open in IMG/M
3300026374\|Ga0257146_1034328	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300027646\|Ga0209466_1019208	All Organisms → cellular organisms → Bacteria	1426	Open in IMG/M
3300027654\|Ga0209799_1084699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	716	Open in IMG/M
3300028380\|Ga0268265_11116486	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300028707\|Ga0307291_1083828	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300028716\|Ga0307311_10269712	Not Available	508	Open in IMG/M
3300028721\|Ga0307315_10194181	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300028768\|Ga0307280_10236023	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300028790\|Ga0307283_10054927	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300028791\|Ga0307290_10140534	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300028791\|Ga0307290_10152190	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300028875\|Ga0307289_10012593	All Organisms → cellular organisms → Bacteria	3242	Open in IMG/M
3300028876\|Ga0307286_10012003	All Organisms → cellular organisms → Bacteria	2691	Open in IMG/M
3300028881\|Ga0307277_10186814	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300031564\|Ga0318573_10420875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	718	Open in IMG/M
3300031573\|Ga0310915_10025262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3653	Open in IMG/M
3300031573\|Ga0310915_10050868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2673	Open in IMG/M
3300031668\|Ga0318542_10126499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → unclassified Pseudorhodoplanes → Pseudorhodoplanes sp.	1254	Open in IMG/M
3300031668\|Ga0318542_10195279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1019	Open in IMG/M
3300031679\|Ga0318561_10246531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	974	Open in IMG/M
3300031713\|Ga0318496_10029292	All Organisms → cellular organisms → Bacteria	2772	Open in IMG/M
3300031719\|Ga0306917_10913841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	686	Open in IMG/M
3300031724\|Ga0318500_10039414	All Organisms → cellular organisms → Bacteria	1950	Open in IMG/M
3300031724\|Ga0318500_10135985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1147	Open in IMG/M
3300031747\|Ga0318502_10302069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	941	Open in IMG/M
3300031751\|Ga0318494_10224528	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300031763\|Ga0318537_10159127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	841	Open in IMG/M
3300031768\|Ga0318509_10300834	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300031768\|Ga0318509_10608602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	608	Open in IMG/M
3300031770\|Ga0318521_10564869	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300031771\|Ga0318546_10053150	All Organisms → cellular organisms → Bacteria	2530	Open in IMG/M
3300031794\|Ga0318503_10001321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5071	Open in IMG/M
3300031835\|Ga0318517_10561018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513	Open in IMG/M
3300031859\|Ga0318527_10119489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1092	Open in IMG/M
3300031880\|Ga0318544_10269223	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300031880\|Ga0318544_10438148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	508	Open in IMG/M
3300031892\|Ga0310893_10138735	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300031893\|Ga0318536_10098416	All Organisms → cellular organisms → Bacteria	1464	Open in IMG/M
3300031897\|Ga0318520_10298913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	969	Open in IMG/M
3300031941\|Ga0310912_11333372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300031942\|Ga0310916_11357895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	583	Open in IMG/M
3300031947\|Ga0310909_10292942	All Organisms → cellular organisms → Bacteria	1363	Open in IMG/M
3300031954\|Ga0306926_12599358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300031959\|Ga0318530_10293622	Not Available	671	Open in IMG/M
3300032025\|Ga0318507_10077410	Not Available	1358	Open in IMG/M
3300032041\|Ga0318549_10186581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	929	Open in IMG/M
3300032051\|Ga0318532_10357743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	518	Open in IMG/M
3300032094\|Ga0318540_10615758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523	Open in IMG/M
3300032174\|Ga0307470_11405700	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300032261\|Ga0306920_102332436	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300033289\|Ga0310914_10991547	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.47%
Host-Associated	Host-Associated	15.53%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.99%
Plants	Host-Associated → Plants	15.53%
Aquatic	Environmental → Aquatic	2.48%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.99%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.56%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.73%
Sediment	Environmental → Aquatic → Sediment	1.86%
Roots	Host-Associated → Plants → Roots	1.24%
Freshwater	Environmental → Aquatic → Freshwater	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.98%
Loam	Environmental → Terrestrial → Soil → Loam	18.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.07%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.86%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.62%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.62%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.57%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.07%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.86%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.62%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.62%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.62%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.18%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.07%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.24%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.24%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.24%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.24%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.62%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.62%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.62%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.62%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.62%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.62%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.62%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_101949891	3300000891	Soil	IIKKPVQRAVLQKIFVPAEGEPATFQKRRYGAGRVGRAASAGQS*
Ga0066676_110395471	3300005186	Soil	GVESIDSRFEYVPIVKKPVQRQVLQKIFLPADVAEPAKLPKRRYAAERVPRAASAGQS*
Ga0066675_108843212	3300005187	Soil	FGYVPIIKKPVQRQVLQKIFIPAETAEPAKLAKRRYAADRRTAPASQS*
Ga0066388_1014631791	3300005332	Tropical Forest Soil	VPIVKKPVQRQVLQTIFVPADAEEPATFAKRRHGSGRHARAAPAGQQ*
Ga0066388_1021896692	3300005332	Tropical Forest Soil	YVPIVKKPVQRQVLQRIFVPDASGDPASLPKRRYGAGRLNRAATARQQ*
Ga0066388_1027957333	3300005332	Tropical Forest Soil	PIVKKPVQRQVLQKIFVPAEATESAKLPKRRYAAERVARAASAGQP*
Ga0066388_1037502881	3300005332	Tropical Forest Soil	KIPFVFITGYGVESIDSRFGYVPIVKKPVQRQVLQTIFVSPEAAEATRLSKRRYGAERVGRAASATQS*
Ga0066388_1037809101	3300005332	Tropical Forest Soil	YGVESIDGRFGYVPIVKKPVQRQVLQGIFVPDASGDPASLPKRRYGASRLSRAATAGQQ*
Ga0066388_1046109131	3300005332	Tropical Forest Soil	KKPVQRQVLQTIFVSPEAAEATRLSKRRYGAERVGRAASATQP*
Ga0066388_1049861542	3300005332	Tropical Forest Soil	FITGYGVESIDGRFAHVPIVKKPVQRQVLQQIFVAGETDQPAKLSKRRYAERVGRPAPASQP*
Ga0066388_1053581311	3300005332	Tropical Forest Soil	KKPVQRQVLQRIFVPDASGDPASLPKRRYGAGRLSRAATAGQQ*
Ga0070713_1004527931	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	SRFGYVPIVKKPVQRQVLQKIFIPADSGEPAKFSQRRYGAGRLGRTASAGQS*
Ga0070713_1017162372	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	FITGYGVESIDSRFGYVPIVKKPVQRQVLQTIFAAPEAGEATRLSKRRYGAERAGRAASATQP*
Ga0070710_100115524	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	IDSRFGYVPIVKKPVQRQVLQTIFAAPEAGEATRLSKRRYGAERAGRAASATQP*
Ga0070711_1016353802	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	YGVESIDSRFGYVPIVKKPVQRQVLQTIFAAPEAGEATRLSKRRYGAERAGRAASATQP*
Ga0070694_1016621532	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	IIKKPVQRAVLQKMFVPVEGESANFQKRRYGAGRVSRAASAGQS*
Ga0066681_104521131	3300005451	Soil	KKPVQRQVLQKIFLPADVAEPAKLPKRRYAAERVPRAASAGQS*
Ga0066681_106981011	3300005451	Soil	SRFGYVPIVKKPVQRQVLQTIFVSPEAAEATRLSKRRYGAERVGRAASATQP*
Ga0070698_1010185771	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	GVESIDSRFGYVPIVKKPVQRQVLQKIFIPAESGEPAKFSQRRYGAGRLGRTASAGQS*
Ga0070665_1016698762	3300005548	Switchgrass Rhizosphere	GVESIESRFADVPIIKKPVQRAVLQKMFVPTEGEPANFQKRRYGAGRVSRSASAGQS*
Ga0066692_101533293	3300005555	Soil	IVKKPVQRQVLQKIFVPADAAEPAKLPKRRYAAERVPRAASAGQS*
Ga0066905_1007516353	3300005713	Tropical Forest Soil	YGVESIDSRFDYVPIVKKPVQRQVLQKIFVPAESGEPAKFSQRRYGAGRLGRAASAGQP*
Ga0068866_114422331	3300005718	Miscanthus Rhizosphere	ESIDSRFGYVPIVKKPVQRQVLQTIFAAPEAGEATRLSKRRYGAERAGRAASATQT*
Ga0066903_1018655061	3300005764	Tropical Forest Soil	IVKKPVQRQVLQKIFVPAESGEPAKFPQRRYGAGRLGRAVSAGQP*
Ga0066903_1030402601	3300005764	Tropical Forest Soil	ITGYGVESIDSRFGYVPIVKKPVQRQVLQKIFIPADRGEAAKLSQRQYGAGRLGRTASAGQP*
Ga0066903_1038276591	3300005764	Tropical Forest Soil	YVPIVKKPVQRQVLQTIFVSPEAAEATRLSKRRYGAERVGRAASASQP*
Ga0066903_1052747421	3300005764	Tropical Forest Soil	SIDGRFGYVPIVKKPVQRQVLQRIFVPGASGDPASLPKRRYGAGRLSRAATAGQQ*
Ga0066903_1077982562	3300005764	Tropical Forest Soil	RFGYVPIVKKPVQRQVLQNIFVPADSEEPAAFAKSRHGVGRHARAAPARQ*
Ga0066903_1085258752	3300005764	Tropical Forest Soil	ESIDGRFGYVPIVKKPVQRQVLQNIFVPADSEEPAAFAKSRHGVGRHARAAPARQ*
Ga0066903_1086663051	3300005764	Tropical Forest Soil	ITGYGVESIDSRFGYVPIVKKPVQRQVLQKIFIPADRGEAAKLPQRRFGAGRLGRTASAGQP*
Ga0066652_1013600191	3300006046	Soil	QRAVLQKMFVPTEGEPANFQKRRYGAGRVSRAASAGQS*
Ga0075018_100256861	3300006172	Watersheds	QVLQKIFIPADSGEPAKFSQRRYGAGRLGRTASAGQS*
Ga0070716_1004006411	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	SRFGYVPIVKKPVQRQVLQKIFIPADSGEPAKFSERRYGAGRLGRAASAGQS*
Ga0068871_1008561201	3300006358	Miscanthus Rhizosphere	DVPIIKKPVQRAVLQKMFVPTEGEPANFQKRRYGAGRVSRAASAGQS*
Ga0074047_119823352	3300006576	Soil	ADVPIIKKPVQRAVLQKMFVPTEGEPANFQKRRYGAGRVSRAASAGQS*
Ga0075428_1005994741	3300006844	Populus Rhizosphere	VPIVKKPVQRQVLQQIFVPTASGDPASFRKRRYGAGRLSRAATAGQQ*
Ga0075421_1009110631	3300006845	Populus Rhizosphere	RFGHVPIVKKPVQRQVLQRIFAPGANGDPASLPKRRYGAGRLSRAATAGQQ*
Ga0075431_1005971591	3300006847	Populus Rhizosphere	FVTGYGVESIDGRFAYVPIIKKPVQRQVLQNIFLPTESGEPAEFSRRRYGAGGLSRAASAGPS*
Ga0075429_1004355041	3300006880	Populus Rhizosphere	TGYGVESIDNRFGYIPIIKKPVQRQVLQKIFIPPATAEPAKLPKRRYAADRRTAPVSQP*
Ga0075435_1002229092	3300007076	Populus Rhizosphere	GVESIDSRFGYVPIVKKPVQRQVLQTIFVSPEAAEATRLSKRRYGGERIGRAASASQS*
Ga0075435_1008908352	3300007076	Populus Rhizosphere	PIIKKPVQRAVLQKIFVPAEGEPATFQKRRYGAGRVGRAASAGQS*
Ga0099829_116712722	3300009038	Vadose Zone Soil	VLQKLFVLAEKAEPAKLSKRRYGADRLGRAASAGQP*
Ga0099827_104762631	3300009090	Vadose Zone Soil	PIVKKPMHRQLLRTIFVPAERVASAKFSKRRYGADRLGRAASAGQS*
Ga0105250_103482272	3300009092	Switchgrass Rhizosphere	FVTGYGVESIESRFADVPIIKKPVQRAVLQKMFVPTEGEPANFQKRRYGAGRVSRAASAGQS*
Ga0066709_1037161482	3300009137	Grasslands Soil	QRQVLQTIFVSPEAAEATRLSKRRYGAERVGRAASATQP*
Ga0114129_107420282	3300009147	Populus Rhizosphere	VKKPVQRQVLQKIFIPADSGEPAKFSQRRYGAGRLGRTASGGQS*
Ga0114129_124616261	3300009147	Populus Rhizosphere	GYGVESIDGRFGYVPIVKKPVQRQVLQQIFAPGASGDPASFPKRRYGAGRLSRAATAGQQ
Ga0114129_134931282	3300009147	Populus Rhizosphere	IDGRFGYVPIVKKPVQRQVLQRIFAPGANGDPASLPKRRYGAGRLSRAATAGQQ*
Ga0105241_105326181	3300009174	Corn Rhizosphere	KPVQRAVLQKIFVPAEGEPATFQKRRYGAGRVGRAASAGQS*
Ga0105237_107089412	3300009545	Corn Rhizosphere	FVTGYGVESIESRFADVPIIKKPVQRAVLQKMFVPTEGEPANFQKRRYGAGRVSRSASAGQS*
Ga0126380_106676051	3300010043	Tropical Forest Soil	YGVESIDSRFDYVPIVKKPVQRQVLQKIFVPAESGEPAKFPQRRYGAGRLGRAASAGQP*
Ga0126384_101343801	3300010046	Tropical Forest Soil	RQVLQKIFIPAESGEPAKFSQRRYGAGRLGRTASAGQS*
Ga0126384_122947851	3300010046	Tropical Forest Soil	ESIDSRFGYVPIVKKPVQRQVLQKIFIPADRGEATKLPQRRYGAGRLGRTASAGQP*
Ga0126382_106864811	3300010047	Tropical Forest Soil	IVKKPVQRQVLQKIFVPAEAAESAKLPKRRYAAERRAASAGQP*
Ga0126382_119064692	3300010047	Tropical Forest Soil	FDYVPIVKKPVQRQVLEKIFIPADSGEPAKFSQRRYGAGRLGRTASAGQP*
Ga0126382_125154981	3300010047	Tropical Forest Soil	KKPVQRQVLQKVFAPPETGEPTKLSKRRNGSDRLSRAASAGQP*
Ga0134067_104379891	3300010321	Grasslands Soil	KIPFVFITGYGVESIDSRFGYVPIVKKPVQRQVLQTIFVSPEAAEATRLSKRRYGAERVGRAASATQP*
Ga0126372_120876772	3300010360	Tropical Forest Soil	ESIDSRFDYVPIVKKPVQRQVLQRIFVPAESGEPAKVPQRRYGAGRLGRAASAGQP*
Ga0126372_129551031	3300010360	Tropical Forest Soil	KKPVQRQVLQKIFVPAESSEPAKFPQRRYGAGRLGRTASAGQS*
Ga0126378_111683401	3300010361	Tropical Forest Soil	TGYGVESIDSRFDYVPIVKKPVQRQVLQKIFVPAESGEPAKFPQRRYGAGRLGRAASAGQP*
Ga0126378_112549932	3300010361	Tropical Forest Soil	DSRFDYVPIVKKPVQRQVLQRIFVPAESGEPAKVPQRRYGAGRLGRAASAGQP*
Ga0126381_1016000011	3300010376	Tropical Forest Soil	YVPIVKKPVQRQVLQKIFIPADKGEATKLSQRRYGAGRLGRTASAGQP*
Ga0134124_127616552	3300010397	Terrestrial Soil	ESIEERFAHVPIIKKPVQRAVLQKIFVPAEGEPATFQKRRYGAGRVGRAASAGQS*
Ga0126383_103864292	3300010398	Tropical Forest Soil	ESIDSRFDYVPIVKKPVQRQVLQKIFVPAESGEPAKFSQRRYGAGRLGRAASAGQP*
Ga0134122_101828381	3300010400	Terrestrial Soil	PFVFITGYGVESIDSRFGYVPIVKKPVQRQVLQTIFAAPETGEATRLSKRRYGAERAGRAASATQP*
Ga0134123_107343673	3300010403	Terrestrial Soil	DVPIIKKPVQRAVLQKMFVPTEGEPTNFQKRRYGAGRMSRAASAGQS*
Ga0137392_111104341	3300011269	Vadose Zone Soil	RFGYVPIVKKPVQRQVLQKIFVPPEAAEPAKLPKRRYAAERVARAASAGQP*
Ga0137391_108430291	3300011270	Vadose Zone Soil	SIDSRFGYVPIVKKPVQRQVLQKIFVPPEAAEPAKLPKRRYAAERVARAASAGQP*
Ga0137389_113970072	3300012096	Vadose Zone Soil	VTGYGVESINSRFGYVQIVKKPVQRHVLQKIFVPAEKEEPAKLSKRRYGADRLGRAASTS
Ga0137388_117485372	3300012189	Vadose Zone Soil	KKPVQRQVLQKLFVLAEKAEPAKLSKRRYGADRLGRAASAGQP*
Ga0137365_100181601	3300012201	Vadose Zone Soil	RFGYVPIIKKPVQRQVLQKIFIPAETAEPAKLAKRRYAADRRTAPASQP*
Ga0137363_105476402	3300012202	Vadose Zone Soil	YVPIVKKPVQRQVLQKIFVPAESGEPAKFPQRRYGAGRLGRAASAGQP*
Ga0137362_113946841	3300012205	Vadose Zone Soil	SIDSRFGYVPIVKKPVQRQVLQKIFIPADSGEPAKFSQRRYGAGRLGRTASAGQS*
Ga0137376_100428023	3300012208	Vadose Zone Soil	DNRFGYVPIIKKPVQRQVLQKIFIPAETAEPAKLAKRRYAADRRTAPASQS*
Ga0137367_103953341	3300012353	Vadose Zone Soil	SIDNRFGYVPIIKKPVQRQVLQKIFIPTATAESAELPKRRYAADRRTAPAS*
Ga0137360_113506741	3300012361	Vadose Zone Soil	ITGYGVESIDSRFGYVPIVKKPVQRQVLQKIFIPADSGEPAKFSQRRYGAGRLGRTASAGQS*
Ga0157285_103564321	3300012897	Soil	HVPIIKKPVQRAVLQKIFVPAEGEPATFQKRRYGAGRVGRAASAGQS*
Ga0164300_103613911	3300012951	Soil	IIKKPVQRAVLQKIFVAAEGEPATFQKRRYGAGRVGRAASAGQS*
Ga0126369_118445072	3300012971	Tropical Forest Soil	DGRFCDVPIIKKPVQRQLLQKIFEPADRDAPAKLPNRRLGNGLRRAVSVGQP*
Ga0157375_102408471	3300013308	Miscanthus Rhizosphere	YGVESIESRFADVPIIKKPVQRAVLQKIFVPVEGESANFQKRRYGAGRVSRAASAGQS*
Ga0132258_100993621	3300015371	Arabidopsis Rhizosphere	VKKPVQRQVLQTIFVSPEAAEATRLSKRRYGGERIGRAASASQS*
Ga0132255_1014044021	3300015374	Arabidopsis Rhizosphere	GYGVESIESRFADVPIIKKPVQRAVLQKMFVPTEGEPANFQKRRYGAGRVSRAASAGQS*
Ga0132255_1024409472	3300015374	Arabidopsis Rhizosphere	VTGYGVESIEERFAHVPIIKKPVQRAVLQKIFVPAEGEPATFQKRRYGAGRVGRAASAGQS*
Ga0182041_106323634	3300016294	Soil	VQRQVLQKIFVPAESGEPAKFPQRRYGAGRLGRAASAGQP
Ga0182041_116576911	3300016294	Soil	ESIDSRFDYVPIVKKPVQRQVLQRIFVPAESGEPAKVPQRRYGAGRLGRAASAGQP
Ga0182035_115695801	3300016341	Soil	GYGVESIDSRFDYVPIVKKPVQRQVLQKIFIPAESGEPAKFSQRRYGAGRVGRTASAGRP
Ga0182032_115009201	3300016357	Soil	RFGYVPIVKKPVQRQVLQKIFIPAESGEPAKFSQRRYGAGRVGRTASAGQP
Ga0182040_114030591	3300016387	Soil	IDSRFGYVPIVKKPVQRQVLQKIFIPAESGEPAKFSQGRYGAGRLGRTASAGQS
Ga0182040_115957862	3300016387	Soil	QVLQKIFIPAESGEPAKFSQRRYGAGRVGRTASAGRP
Ga0182039_114902702	3300016422	Soil	TGYGVESIDSRFGYVPIVKKPVQRQVLQKIFIPAESGEPAKFSQGRYGAGRLGRTASAGQ
Ga0182039_119646382	3300016422	Soil	IVKKPVQRQVLQKIFIPAESGEPAKFSQRRYGAGRLGRAASAGQS
Ga0182038_115102412	3300016445	Soil	SIDSRFGYVPIVKKPVQRQVLQKIFIPAESGEPAKFSQRRYGAGRVGRTASAGRP
Ga0184604_103752941	3300018000	Groundwater Sediment	KPVQRAVLQKMFVPTEGEPANFQKRRYGAGRVSRAASAGQS
Ga0184640_100444251	3300018074	Groundwater Sediment	GYGVESIESRFAHVPIIKKPVQRADLQKIFVPAEGEPSTFRKRRYGGRVGRAASAGPS
Ga0066655_101077941	3300018431	Grasslands Soil	QVLQTIFVSAEAAEATRLSKRRYGAERVGRAASASQP
Ga0190274_112528912	3300018476	Soil	VTGYGVESIESRFADVPIIKKPVQRAVLQKMFVPTEGEPANFQKRRYGAGRVSRAASAGQ
Ga0210381_103451081	3300021078	Groundwater Sediment	ESRFADVPIIKKPVQRAVLQKMFVPTEGEPANFQKRRYGAGRVSRAASAGQS
Ga0213876_104596042	3300021384	Plant Roots	GYVPIIKKPVQRQVLQSMFVPPEKSEPSFSPRRYAGRVSRTATASQP
Ga0126371_100605673	3300021560	Tropical Forest Soil	KPVQRQVLQQIFVPGETDQPAKLSKRRYAERMGRPAPASQP
Ga0126371_107958261	3300021560	Tropical Forest Soil	IKKPVQRQVLQKIFLPADCDEPAKLPSRRLGNGLRRAMSLGQQP
Ga0179589_105738271	3300024288	Vadose Zone Soil	GYGVESIDSRFGYVPIVKKPVQRQVLQKIFIPADSGEPAKFSQRRYGAGRLGRTASAGQS
Ga0207692_111345002	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	KIPFVFITGYGVESIDSRFGYVPIVKKPVQRQVLQTIFAAPEAGEATRLSKRRYGAERAGRAASATQP
Ga0207693_110008812	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	YGVESIDSRFGYVPIVKKPVQRQVLQTIFAAPEAGEATRLSKRRYGAERAGRAASATQP
Ga0207693_110170022	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	YGVESIDSRFGYVPIVKKPVQRQVLQTIFAAPETGEATRLSKRRYGAERAGRAASATQP
Ga0207663_115732742	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	FADVPIIKKPVQRAVLQKMFVPTEGEPANFQKRRYGAGRVSRSASAGQS
Ga0207659_101261882	3300025926	Miscanthus Rhizosphere	FADVPIIKKPVQRAVLQKMFVPTEGEPANFQKRRYGAGRVSRAASAGQS
Ga0207690_109049501	3300025932	Corn Rhizosphere	IKKPVQRAVLQKMFVPVEGESANFQKRRYGAGRVSRAASAGQS
Ga0207668_101905921	3300025972	Switchgrass Rhizosphere	QRAVLQKMFVPTEGEPANFQKRRYGAGRVSRAASAGQS
Ga0207698_109225662	3300026142	Corn Rhizosphere	SRFADVPIIKKPVQRAVLQKMFVPVEGESANFQKRRYGAGRVSRAASAGQS
Ga0209375_11459163	3300026329	Soil	ITGYGVESIDSRFEYVPIVKKPVQRQVLQKIFVPADAAEPAKLPKRRYAAERVPRAASVGQS
Ga0257146_10343281	3300026374	Soil	TGYGVESIDSRFAHVPIIKKPVQRADLQRIFVPAEGEPATFQKRRYGGRVGRAASASQP
Ga0209466_10192082	3300027646	Tropical Forest Soil	RQVLQKIFVPAESGEPAKFSQRRYGAGRLGRAASAGQP
Ga0209799_10846992	3300027654	Tropical Forest Soil	DYVPIVKKPVQRQVLQKIFVPAESGEPAKFPQRRYGAGRLGRAASAGQP
Ga0268265_111164862	3300028380	Switchgrass Rhizosphere	SRFADVPIIKKPVQRAVLQKMFVPTEGEPANFQKRRYGAGRVSRAASAGQS
Ga0307291_10838282	3300028707	Soil	ESRFAHVPIIKKPVQRADLQKIFVPAEGEPSTFRKRRYGGRVGRTASAGPS
Ga0307311_102697122	3300028716	Soil	DVPIIKKPVQRAVLQKMFVPTEGEPANFQKRRYGAGRVSRAASAGQS
Ga0307315_101941811	3300028721	Soil	IDSRFAHVPIIKKPVQRADLQKIFAPAEGEPSTFRKRRYGGRVGRAASAGPS
Ga0307280_102360231	3300028768	Soil	DSRFGYVPIVKKPVQRQVLQTIFAAPETGEATRLSKRRYGAERAGRAASATQP
Ga0307283_100549271	3300028790	Soil	IESRFADVPIIKKPVQRAVLQKMFVPTEGEPANFQKRRYGAGRVSRAASAGQS
Ga0307290_101405342	3300028791	Soil	RFAHVPIIKKPVQRADLQKIFVPAEGEPSTFRKRRYGGRVGRTASAGPS
Ga0307290_101521902	3300028791	Soil	VPIIKKPVQRADLQKIFVPAEGEPSTFRKRRYGGRVGRAASAGPS
Ga0307289_100125931	3300028875	Soil	VPIVKKPVQRQVLQTIFAAPETGEATRLSKRRYGAERAGRAASATQP
Ga0307286_100120033	3300028876	Soil	RKHPVQRAVLQKMFVPTEGEPANFQKRRYGAGRVSRAASAGQS
Ga0307277_101868142	3300028881	Soil	VTGYGVESIESRFAHVPIIKKPVQRADLQKIFVPAEGEPSTFRKRRYGGRVGRTASAGPS
Ga0318573_104208751	3300031564	Soil	IPFVFITGYGVESIDGRFAHVPIVKKPVQRQVLQQIFVAGETDQPTKLSKRRYAERMGRPAPASQP
Ga0310915_100252621	3300031573	Soil	FVFITGYGVESIDGRFAHVPIVKKPVQRQVLQQIFVAGETDQPTKLSKRRYAERMGRPAPASQP
Ga0310915_100508685	3300031573	Soil	VQRQVLQKIFIPADSGEAAKFSQRRYGAGRLGRTASAGQP
Ga0318542_101264991	3300031668	Soil	GVESIDSRFGYVPIVKKPVQRQVLQKIFIPADSGEAAKFSQRRYGAGRLGRTASAGQP
Ga0318542_101952793	3300031668	Soil	VESIDSRFDYVPIVKKPVQRQVLQKIFVPADSGEPAKFPQRRYGAGRLGRAASAGQP
Ga0318561_102465311	3300031679	Soil	DSRFDYVPIVKKPVQRQVLQKIFVPAESGEPAKFPQRRYGAGRLGRAASAGQP
Ga0318496_100292921	3300031713	Soil	PVQRQVLQKIFVPAESGEPAKFPQRRYGAGRLGRAASAGQP
Ga0306917_109138413	3300031719	Soil	IVKKPVQRQVLQKIFVPADSGEPAKFPQRRYGAGRLGRAASAGQP
Ga0318500_100394143	3300031724	Soil	YVPIVKKPVQRQVLQKIFIPADSGEPAKFSERRYGAGRLGRTASAGQS
Ga0318500_101359853	3300031724	Soil	IDSRFDYVPIVKKPVQRQVLQKIFVPADSGEPAKFPQRRYGAGRLGRAASAGQP
Ga0318502_103020691	3300031747	Soil	PVQRQVLQKIFVPADSGEPAKFPQRRYGAGRLGRAASAGQP
Ga0318494_102245281	3300031751	Soil	LQKIFVPAESGEPAKFPQRRYGAGRLGRAASAGQP
Ga0318537_101591272	3300031763	Soil	ARQIPFVFITGYGVESIDGRFAHVPIVKKPVQRQVLQQIFVAGETDQPTKLSKRRYAERMGRPAPASQP
Ga0318509_103008341	3300031768	Soil	CYVPIVKKPVQRQVLQKIFIPADRGEATKLQQRRYGAGRLGRTASAGQP
Ga0318509_106086022	3300031768	Soil	SIDSRFGYVPIVKKPVQRQVLQKIFIPADSGEAAKFSQRRYGAGRLGRTASAGQP
Ga0318521_105648692	3300031770	Soil	YVPIVKKPVQRQVLQKIFIPADRGEATKLQQRRYGAGRLGRTASAGQP
Ga0318546_100531504	3300031771	Soil	YGVESIDSRFGYVPIVKKPVQRQVLQKIFIPADSGEPAKFSQRRYGAGRLGRTASAGQS
Ga0318503_100013211	3300031794	Soil	SIDSRFGYVPIVKKPVQRQVLQKIFIPADRGEATKLQQRRYGAGRLGRTASAGQP
Ga0318517_105610181	3300031835	Soil	TGYGVESIDSRFDYVPIVKKPVQRQVLQKIFVPAESGEPAKFSQRRYGAGRLGRAASAGQ
Ga0318527_101194891	3300031859	Soil	ITGYGVESIDSRFDYVPIVKKPVQRQVLQKIFVPADSGEPAKFPQRRYGAGRLGRAASAGQP
Ga0318544_102692232	3300031880	Soil	SRFGYVPIVKKPVQRQVLQKIFIPAESGEPAKFSQGRYGAGRLGRTASAGQS
Ga0318544_104381482	3300031880	Soil	FDYVPIVKKPVQRQVLQKIFVPADSGEPAKFPQRRYGAGRLGRAASAGQP
Ga0310893_101387351	3300031892	Soil	VQRAVLQKMFVPTEGEPANFQKRRYGAGRVSRAASAGQS
Ga0318536_100984161	3300031893	Soil	GVESIDSRFGYVPIVKKPVQRQVLQKIFIPADSGEPAKFSQRRYGAGRLGRTASAGQS
Ga0318520_102989133	3300031897	Soil	RFDYVPIVKKPVQRQVLQKIFVPADSGEPAKFPQRRYGAGRLGRAASAGQP
Ga0310912_113333721	3300031941	Soil	SIDSRFGYVPIVKKPVQRQVLQKIFIPAESGEPAKFSQGRYGAGRLGRTASAGQS
Ga0310916_113578951	3300031942	Soil	YGVESIDSRFGYVPIVKKPVQRQVLQKIFIPAESGEPAKFSQRRYGAGRLGRTASAGQS
Ga0310909_102929422	3300031947	Soil	YGVESIDGRFAHVPIVKKPVQRQVLQQIFVAGETDQPTKLSKRRYAERMGRPAPASQP
Ga0306926_125993582	3300031954	Soil	ITGYGVESIDSRFGYVPIVKKPVQRQVLQKIFIPADSGEPAKFSQRRYGAGRLGRTASAGQS
Ga0318530_102936221	3300031959	Soil	VQRQVLQKIFVPADSGEPAKFPQRRYGVGRLGRAASAGQP
Ga0318507_100774101	3300032025	Soil	PVQRQVLQKIFIPADSGEAAKFSQRRYGAGRLGRTASAGQP
Ga0318549_101865813	3300032041	Soil	VPIVKKPVQRQVLQKIFVPAESGEPAKFPQRRYGAGRLGRAASAGQP
Ga0318532_103577431	3300032051	Soil	YVPIVKKPVQRQVLQKIFIPADSGEPAKFSQRRYGAGRLGRTASAGQS
Ga0318540_106157581	3300032094	Soil	IDSRFGYVPIVKKPVQRQVLQKIFIPADSGEPAKFSQRRYGAGRLGRTASAGQS
Ga0307470_114057001	3300032174	Hardwood Forest Soil	VQRQVLQRIFAPGANGDPASLPKRRYGAGRLSRAASAGQQ
Ga0306920_1023324361	3300032261	Soil	VKKPVQRQVLQKIFIPAESGEPAKFSQGRYGAGRLGRTASAGQS
Ga0310914_109915471	3300033289	Soil	ITGYGVESIDSRFGYVPIVKKPVQRQVLQKIFIPAESGEPAKFSQRRYGAGRLGRAASAGQS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F040836

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences