Metagenome / Metatranscriptome Family F040815

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F040815
Family Type	Metagenome / Metatranscriptome
Number of Sequences	161
Average Sequence Length	78 residues
Representative Sequence	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPSHSGASGDKTS
Number of Associated Samples	130
Number of Associated Scaffolds	161

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.30 %
% of genes near scaffold ends (potentially truncated)	39.13 %
% of genes from short scaffolds (< 2000 bps)	83.85 %
Associated GOLD sequencing projects	116
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.627 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (31.677 % of family members)
Environment Ontology (ENVO)	Unclassified (29.814 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.994 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.43% β-sheet: 0.00% Coil/Unstructured: 48.57%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 161 Family Scaffolds
PF02796	HTH_7	13.04
PF13936	HTH_38	5.59
PF00589	Phage_integrase	3.73
PF04392	ABC_sub_bind	1.86
PF07992	Pyr_redox_2	1.86
PF04008	Adenosine_kin	1.24
PF10074	DUF2285	1.24
PF12833	HTH_18	1.24
PF00106	adh_short	0.62
PF13191	AAA_16	0.62
PF00582	Usp	0.62
PF13857	Ank_5	0.62
PF05222	AlaDh_PNT_N	0.62
PF02450	LCAT	0.62
PF00440	TetR_N	0.62
PF12796	Ank_2	0.62
PF00665	rve	0.62
PF08463	EcoEI_R_C	0.62
PF00211	Guanylate_cyc	0.62
PF13546	DDE_5	0.62
PF02738	MoCoBD_1	0.62
PF00171	Aldedh	0.62
PF01863	YgjP-like	0.62
PF03466	LysR_substrate	0.62
PF07519	Tannase	0.62
PF03734	YkuD	0.62

COG ID	Name	Functional Category	% Frequency in 161 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.86
COG1839	Adenosine/AMP kinase	Nucleotide transport and metabolism [F]	1.24
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.62
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.62
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.62
COG1451	UTP pyrophosphatase, metal-dependent hydrolase family	General function prediction only [R]	0.62
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.62
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.62
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.62
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.62
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.62
COG4096	Type I site-specific restriction endonuclease, part of a restriction-modification system	Defense mechanisms [V]	0.62
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.62
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.62

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.63 %
Unclassified	root	N/A	40.37 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.63 %
Unclassified	root	N/A	40.37 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.63 %
Unclassified	root	N/A	40.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	37.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	36.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	29.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	19.88 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.62 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	17.39 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.62 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.86 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.62 %
unclassified Methylocystis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis	0.62 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.62 %
Hyphomicrobium album	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium album	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.86 %
Methylocystis sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp.	0.62 %
Bradyrhizobium sp. 2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 2	0.62 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.62 %
Hyphomicrobium album	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium album	0.62 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_13036721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	881	Open in IMG/M
3300001545\|JGI12630J15595_10057919	Not Available	769	Open in IMG/M
3300002245\|JGIcombinedJ26739_100133620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2342	Open in IMG/M
3300005434\|Ga0070709_10056019	All Organisms → cellular organisms → Bacteria → Proteobacteria	2491	Open in IMG/M
3300005436\|Ga0070713_100025979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4589	Open in IMG/M
3300005439\|Ga0070711_101289219	Not Available	634	Open in IMG/M
3300005445\|Ga0070708_101417956	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300005467\|Ga0070706_100066920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3323	Open in IMG/M
3300006050\|Ga0075028_100993397	Not Available	522	Open in IMG/M
3300006057\|Ga0075026_101072877	Not Available	505	Open in IMG/M
3300006173\|Ga0070716_100127415	All Organisms → cellular organisms → Bacteria	1604	Open in IMG/M
3300006881\|Ga0068865_101938231	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300007255\|Ga0099791_10422546	Not Available	643	Open in IMG/M
3300007788\|Ga0099795_10020868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2140	Open in IMG/M
3300007788\|Ga0099795_10113893	Not Available	1075	Open in IMG/M
3300007788\|Ga0099795_10263137	Not Available	747	Open in IMG/M
3300009038\|Ga0099829_11234636	Not Available	619	Open in IMG/M
3300009088\|Ga0099830_11592873	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300009143\|Ga0099792_11014425	Not Available	555	Open in IMG/M
3300010047\|Ga0126382_12435422	Not Available	509	Open in IMG/M
3300010398\|Ga0126383_12340393	Not Available	620	Open in IMG/M
3300011269\|Ga0137392_10587100	Not Available	925	Open in IMG/M
3300011269\|Ga0137392_11230549	Not Available	607	Open in IMG/M
3300011270\|Ga0137391_10292859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1405	Open in IMG/M
3300011271\|Ga0137393_10141690	Not Available	1999	Open in IMG/M
3300011271\|Ga0137393_10974577	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300012096\|Ga0137389_10101261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2290	Open in IMG/M
3300012200\|Ga0137382_10966498	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300012202\|Ga0137363_10729791	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300012203\|Ga0137399_10085137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2410	Open in IMG/M
3300012203\|Ga0137399_10685639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	862	Open in IMG/M
3300012205\|Ga0137362_11008014	Not Available	709	Open in IMG/M
3300012211\|Ga0137377_11050727	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300012361\|Ga0137360_11084902	Not Available	691	Open in IMG/M
3300012362\|Ga0137361_10613710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	996	Open in IMG/M
3300012363\|Ga0137390_10407057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1338	Open in IMG/M
3300012363\|Ga0137390_11894639	Not Available	525	Open in IMG/M
3300012582\|Ga0137358_10457899	Not Available	861	Open in IMG/M
3300012582\|Ga0137358_10483775	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300012582\|Ga0137358_10595281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	742	Open in IMG/M
3300012685\|Ga0137397_10048610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3042	Open in IMG/M
3300012917\|Ga0137395_11151250	Not Available	546	Open in IMG/M
3300012922\|Ga0137394_10148515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1994	Open in IMG/M
3300012922\|Ga0137394_11518210	Not Available	528	Open in IMG/M
3300012923\|Ga0137359_10307140	All Organisms → cellular organisms → Bacteria	1412	Open in IMG/M
3300012923\|Ga0137359_10397692	All Organisms → cellular organisms → Bacteria	1222	Open in IMG/M
3300012923\|Ga0137359_11517931	Not Available	558	Open in IMG/M
3300012924\|Ga0137413_10513658	Not Available	883	Open in IMG/M
3300012924\|Ga0137413_10674556	Not Available	781	Open in IMG/M
3300012927\|Ga0137416_10362156	All Organisms → cellular organisms → Bacteria	1219	Open in IMG/M
3300012930\|Ga0137407_11832035	Not Available	578	Open in IMG/M
3300012944\|Ga0137410_10044946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3128	Open in IMG/M
3300012951\|Ga0164300_10265753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	879	Open in IMG/M
3300012957\|Ga0164303_11108309	Not Available	572	Open in IMG/M
3300012958\|Ga0164299_10676534	Not Available	718	Open in IMG/M
3300012960\|Ga0164301_10516570	Not Available	865	Open in IMG/M
3300012961\|Ga0164302_10328363	Not Available	1012	Open in IMG/M
3300012985\|Ga0164308_10723110	Not Available	861	Open in IMG/M
3300012985\|Ga0164308_12176573	Not Available	516	Open in IMG/M
3300012989\|Ga0164305_11933513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 2	536	Open in IMG/M
3300014501\|Ga0182024_11403088	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300015052\|Ga0137411_1004882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium album	1173	Open in IMG/M
3300015242\|Ga0137412_10456628	Not Available	982	Open in IMG/M
3300015245\|Ga0137409_10032563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5043	Open in IMG/M
3300015264\|Ga0137403_10596127	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300015371\|Ga0132258_13959564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1006	Open in IMG/M
3300016270\|Ga0182036_10081184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2147	Open in IMG/M
3300016270\|Ga0182036_10344903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1146	Open in IMG/M
3300016294\|Ga0182041_10409526	Not Available	1156	Open in IMG/M
3300016371\|Ga0182034_10849850	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300016371\|Ga0182034_11634474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	566	Open in IMG/M
3300016371\|Ga0182034_11696838	Not Available	556	Open in IMG/M
3300016387\|Ga0182040_10303101	Not Available	1222	Open in IMG/M
3300016404\|Ga0182037_10276415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1340	Open in IMG/M
3300018476\|Ga0190274_10165500	All Organisms → cellular organisms → Bacteria	1892	Open in IMG/M
3300019882\|Ga0193713_1009569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2955	Open in IMG/M
3300020004\|Ga0193755_1121674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	813	Open in IMG/M
3300020199\|Ga0179592_10454478	Not Available	553	Open in IMG/M
3300020579\|Ga0210407_10112210	All Organisms → cellular organisms → Bacteria	2079	Open in IMG/M
3300020580\|Ga0210403_10009908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7777	Open in IMG/M
3300020580\|Ga0210403_10140054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1975	Open in IMG/M
3300020580\|Ga0210403_11435226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	521	Open in IMG/M
3300020581\|Ga0210399_10226101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1559	Open in IMG/M
3300020582\|Ga0210395_10561070	Not Available	858	Open in IMG/M
3300020583\|Ga0210401_11267074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	595	Open in IMG/M
3300021168\|Ga0210406_10218678	Not Available	1574	Open in IMG/M
3300021168\|Ga0210406_10400653	Not Available	1099	Open in IMG/M
3300021168\|Ga0210406_10458287	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300021168\|Ga0210406_10585135	Not Available	873	Open in IMG/M
3300021403\|Ga0210397_10166145	All Organisms → cellular organisms → Bacteria	1554	Open in IMG/M
3300021405\|Ga0210387_10341606	All Organisms → cellular organisms → Bacteria → Proteobacteria	1322	Open in IMG/M
3300021406\|Ga0210386_11333771	Not Available	603	Open in IMG/M
3300021432\|Ga0210384_10644124	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300021432\|Ga0210384_11351911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	617	Open in IMG/M
3300021433\|Ga0210391_10878705	Not Available	700	Open in IMG/M
3300021475\|Ga0210392_11109849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	593	Open in IMG/M
3300021478\|Ga0210402_10007151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9810	Open in IMG/M
3300021478\|Ga0210402_10927801	Not Available	797	Open in IMG/M
3300022726\|Ga0242654_10292567	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300024347\|Ga0179591_1229628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3677	Open in IMG/M
3300025906\|Ga0207699_10054344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2378	Open in IMG/M
3300025910\|Ga0207684_10137013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2102	Open in IMG/M
3300025910\|Ga0207684_10178889	All Organisms → cellular organisms → Bacteria	1829	Open in IMG/M
3300025915\|Ga0207693_10185388	All Organisms → cellular organisms → Bacteria	1638	Open in IMG/M
3300025916\|Ga0207663_10644054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp.	836	Open in IMG/M
3300026356\|Ga0257150_1044982	Not Available	649	Open in IMG/M
3300026467\|Ga0257154_1065450	Not Available	572	Open in IMG/M
3300026475\|Ga0257147_1036577	Not Available	715	Open in IMG/M
3300026490\|Ga0257153_1038035	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300026494\|Ga0257159_1078817	Not Available	570	Open in IMG/M
3300026508\|Ga0257161_1071444	Not Available	711	Open in IMG/M
3300026551\|Ga0209648_10182803	All Organisms → cellular organisms → Bacteria	1621	Open in IMG/M
3300026555\|Ga0179593_1200157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1791	Open in IMG/M
3300027050\|Ga0209325_1038613	Not Available	576	Open in IMG/M
3300027512\|Ga0209179_1012903	All Organisms → cellular organisms → Bacteria	1509	Open in IMG/M
3300027521\|Ga0209524_1003703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2824	Open in IMG/M
3300027846\|Ga0209180_10348941	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300028047\|Ga0209526_10009300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6768	Open in IMG/M
3300028536\|Ga0137415_10181416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1930	Open in IMG/M
3300029636\|Ga0222749_10510400	Not Available	652	Open in IMG/M
3300031122\|Ga0170822_12546491	Not Available	577	Open in IMG/M
3300031128\|Ga0170823_12280646	Not Available	513	Open in IMG/M
3300031170\|Ga0307498_10367469	Not Available	557	Open in IMG/M
3300031231\|Ga0170824_122362293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1880	Open in IMG/M
3300031543\|Ga0318516_10160165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1294	Open in IMG/M
3300031544\|Ga0318534_10226408	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300031545\|Ga0318541_10149706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1280	Open in IMG/M
3300031546\|Ga0318538_10179546	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300031546\|Ga0318538_10518250	Not Available	646	Open in IMG/M
3300031561\|Ga0318528_10327265	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300031572\|Ga0318515_10550885	Not Available	614	Open in IMG/M
3300031573\|Ga0310915_10463812	Not Available	900	Open in IMG/M
3300031668\|Ga0318542_10378317	Not Available	730	Open in IMG/M
3300031708\|Ga0310686_106816105	Not Available	748	Open in IMG/M
3300031719\|Ga0306917_11160910	Not Available	600	Open in IMG/M
3300031744\|Ga0306918_10162840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1657	Open in IMG/M
3300031744\|Ga0306918_10650471	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300031777\|Ga0318543_10026647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2213	Open in IMG/M
3300031779\|Ga0318566_10234751	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300031799\|Ga0318565_10050734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1925	Open in IMG/M
3300031805\|Ga0318497_10183293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1154	Open in IMG/M
3300031890\|Ga0306925_10481890	Not Available	1323	Open in IMG/M
3300031897\|Ga0318520_10265633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1027	Open in IMG/M
3300031897\|Ga0318520_10671039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	647	Open in IMG/M
3300031910\|Ga0306923_11070373	Not Available	871	Open in IMG/M
3300031912\|Ga0306921_10205757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2306	Open in IMG/M
3300031941\|Ga0310912_10050439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	2922	Open in IMG/M
3300031942\|Ga0310916_11315841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	594	Open in IMG/M
3300031954\|Ga0306926_10099443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3564	Open in IMG/M
3300031962\|Ga0307479_11779862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	568	Open in IMG/M
3300032039\|Ga0318559_10199458	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300032041\|Ga0318549_10310424	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300032042\|Ga0318545_10123901	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300032060\|Ga0318505_10446131	Not Available	611	Open in IMG/M
3300032076\|Ga0306924_10392209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1590	Open in IMG/M
3300032076\|Ga0306924_10598719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1247	Open in IMG/M
3300032076\|Ga0306924_11420981	Not Available	739	Open in IMG/M
3300033289\|Ga0310914_11203699	Not Available	659	Open in IMG/M
3300033290\|Ga0318519_10618971	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.76%
Host-Associated	Host-Associated	1.24%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.89%
Aquatic	Environmental → Aquatic	1.86%
Plants	Host-Associated → Plants	1.24%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.89%
Sediment	Environmental → Aquatic → Sediment	1.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.24%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.34%
Loam	Environmental → Terrestrial → Soil → Loam	9.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.62%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.62%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	45.34%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.13%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.86%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.68%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	29.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.07%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.11%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.24%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.62%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.62%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.62%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.62%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_130367211	3300000789	Soil	DEANFEGWSGPDALRRLRIEAAAIDKDVTVRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDPSHSGASGDKTN*
JGI12630J15595_100579191	3300001545	Forest Soil	MMKQILKTGPNQMETLRRLRTEAAAIDKDVKVRSERIRQTRDFRVRFWFREKAMEKGFAASQRS
JGIcombinedJ26739_1001336205	3300002245	Forest Soil	TFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFATSQHSDPSHSGASGDKTS*
Ga0070709_100560193	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MMKQILKAGPNQMETLRRLRTEAATIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAGSQHSDPSHSGTSGDKTS*
Ga0070713_1000259791	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MMKQILKAGPNQMETLRRLRTEAATIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPSHSGTSGDKTS*
Ga0070711_1012892192	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MEGVPKSEGTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQH
Ga0070708_1014179561	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRVRFWFREKAMEQRFATSQHSDPSDSAANGD
Ga0070706_1000669205	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MMKKILKAGPNQMETLLRLRTEAAAIDKDVTVRSERIRQTRDFRVRFWFREKAMEQRFATSQHSDPSDSAANGDKTS*
Ga0075028_1003228011	3300006050	Watersheds	MGDLLGDVPKSEGTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQH
Ga0075028_1009933971	3300006050	Watersheds	ETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQKFAASQHSDPSHSGTSGDKTS*
Ga0075026_1010728772	3300006057	Watersheds	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPSHSGASGDKTS*
Ga0070716_1001274151	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVHSDRIRQTRDFRIRFCFREKTMQKEFAASQHSDPSHSGAS
Ga0068865_1019382311	3300006881	Miscanthus Rhizosphere	MMKLILKAGPNQMEALRRLRTEAAAIDKDVTVHSDRIRQTRDIRIRFWFREKTMQQEFAASQHS
Ga0099791_104225461	3300007255	Vadose Zone Soil	QILKAGPNQMETLRRLRTDAAAIDQDVTIRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPSHLGASGDKTS*
Ga0099795_100208683	3300007788	Vadose Zone Soil	MMKQILKAGPNQMETLRRLRTEAEAIDKDVTVRSERIRQTRDFRVRFWFREKAMEQRFAASQHADASHPGASGDKKN*
Ga0099795_101138933	3300007788	Vadose Zone Soil	FVSLMEGVSKSEGTFEMMKQILKAGPNQMETLRRLRAEAAAIDKDVTVRSERLRQTRDFRIRFWFREKTMEQRFAASQHSDPLHSEASGDKTS*
Ga0099795_102631371	3300007788	Vadose Zone Soil	RTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPSHSGASGDKTS*
Ga0099829_112346361	3300009038	Vadose Zone Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRHTRDFGIRFWFGEKTMEQEFAASQHSDPSHSGASGDKTS*
Ga0099830_115928731	3300009088	Vadose Zone Soil	MESVPKSVRTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMETGFAASQHSDPSHPG
Ga0099792_110144252	3300009143	Vadose Zone Soil	MESVPKSVRTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPSHSGASGDKTS*
Ga0126382_124354222	3300010047	Tropical Forest Soil	MMKQILKAGPNQMETLRRLRTEAEAFDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPSDSGASGDKTS*
Ga0126383_123403931	3300010398	Tropical Forest Soil	MFEMIKQILKAGPNQMETLRRLRTEAEAIDKDVTVRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDPSHSGASSDKAS*
Ga0137392_105871002	3300011269	Vadose Zone Soil	TFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMETGFAASQHSDPSHPGASGDKKS*
Ga0137392_112305491	3300011269	Vadose Zone Soil	TFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPSHSGASGDKKS*
Ga0137391_102928592	3300011270	Vadose Zone Soil	MMKQILKAGPNQMETLRRLRTEAAAFDKDVTVRSERIRQTRDFRIRFWFQEKAMEQRFAASQHSDPSHSGASGNKTS*
Ga0137393_101416904	3300011271	Vadose Zone Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMETGFAASQHSDPSHPGASGDKKS*
Ga0137393_109745771	3300011271	Vadose Zone Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQGFAASQHSDPSHSGASGDKTS*
Ga0137389_101012614	3300012096	Vadose Zone Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPSHSGASGDKKS*
Ga0137382_109664982	3300012200	Vadose Zone Soil	MMKQVLKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREEAMEQRFATSQHSAPSHS
Ga0137363_107297911	3300012202	Vadose Zone Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASRHSDPSHSGASGDKTS*
Ga0137399_100851373	3300012203	Vadose Zone Soil	MMKQILKGGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDPSHSGASGDKTS*
Ga0137399_106856392	3300012203	Vadose Zone Soil	MMKQILKAGPNQMETLRRLRTEAEVIDKDVTVRSERIRQTRDFRVRFWFREKAMEQRFAASQHADASHPGASGDKKN*
Ga0137362_110080142	3300012205	Vadose Zone Soil	MMKQILKGGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQEFAASQHSDPSHSGASGDKTS*
Ga0137377_110507271	3300012211	Vadose Zone Soil	MERVPKSVRTFEMMKQILKAGPNQMETLRRLRTEAEAIDKDVTVRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDPSHTSASGDKPS*
Ga0137360_110849021	3300012361	Vadose Zone Soil	MESVPKSVRTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASRHSDPSHSGASGDKTS*
Ga0137361_106137102	3300012362	Vadose Zone Soil	MESVPKSVRTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPSNSGASGDKTS*
Ga0137390_104070572	3300012363	Vadose Zone Soil	MESVPKSVRTLKMMKQILKAGPNQMETLRRLRTEAAAFDKDVTVRSERIRQTRDFRIRFWFQEKAMEQRFAASQHSDPSHSGASGNKTS*
Ga0137390_118946391	3300012363	Vadose Zone Soil	METLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMETGFAASQHSDPSHPGASGDKKS*
Ga0137358_104578992	3300012582	Vadose Zone Soil	SMESVPKSVRTFEMMKQTLKAGPNQMETLRRLRTEAAEIDKDVTVRSERIRQTRDFRIRFWFREKTMERRFSASQDTEPSHSGVSGNKTS*
Ga0137358_104837752	3300012582	Vadose Zone Soil	MESVPKSVRTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDIRIRFWFREKTMEQKFVASQHSDPSQSGASGDKTS*
Ga0137358_105952812	3300012582	Vadose Zone Soil	MMKQILKGGPNQMEKLRRFRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQSFAASQHSNPSNSGASGDKTS*
Ga0137397_100486104	3300012685	Vadose Zone Soil	MMKQVLKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDPSHSGASGDKTS*
Ga0137395_111512501	3300012917	Vadose Zone Soil	MESVPNSVRTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPLHSEASGDKTS*
Ga0137394_101485154	3300012922	Vadose Zone Soil	QILKAGPNQMETLRRLRTEAAAIDKDMTVRSERIRQTRDFRIRFWFRGKAMEQRFAASHHSDPSHSGASGDKTS*
Ga0137394_115182101	3300012922	Vadose Zone Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVAVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPLHSEASGDKTS*
Ga0137359_103071402	3300012923	Vadose Zone Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQGFAASQHSDPSRSGASGDKKS*
Ga0137359_103976922	3300012923	Vadose Zone Soil	MESVPKSVRTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQSFAASQHSNPSNSGASGDKTS*
Ga0137359_115179311	3300012923	Vadose Zone Soil	MMKQILKAGPNQMETLRRLGTEAAAIDRDVTVRSDRIRQTRDFRIRFWFREKAMEQRFAASQHSDPSHSSASGDKTS*
Ga0137413_105136583	3300012924	Vadose Zone Soil	TFEMMKQILKAGPNQMETLRRLRAEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDSLHSEASGDKTS*
Ga0137413_106745562	3300012924	Vadose Zone Soil	MMKQILKAGPNQMETLRRLRTEAEAIDKDVTVRSERIRQTRDFRVRLWFREKAMEQRFAASQHADASHPGASGDKKN*
Ga0137416_103621561	3300012927	Vadose Zone Soil	MAKSVRTFEMMKQILKAGPNQMETLRRLRAEAAAVDKDVTVRSERIRQTRDFRIRFWFREKAMEQRFAVSEVL*
Ga0137407_118320351	3300012930	Vadose Zone Soil	MMKQILKAGPNQMEALRRLRTEAAVIDKDVTVRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDPSHTSASGDKPS*
Ga0137410_100449465	3300012944	Vadose Zone Soil	MMKQILKAGPNQMETLRRLRTEAAEIDKDVTVRSERIRQTRDFRIRFWFRGKAMEQRFAASHHSDPSHSGASGDKTS*
Ga0164300_102657531	3300012951	Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQEFAASQHSDPSHSGASGDKTS*
Ga0164303_111083091	3300012957	Soil	MMKQILKAGPNQMETLRRLGTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDPSHPGANGDR*
Ga0164299_106765341	3300012958	Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFTASQHSDPSHAGASGDKTS*
Ga0164301_105165701	3300012960	Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQEFAASEHSDPSHSGASGDKTS*
Ga0164302_103283631	3300012961	Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQEFAAAQHSNPSYSGCPGSDT*
Ga0164308_107231102	3300012985	Soil	MMKKILKAGPNQMETLRRLRTEAAAIEKDVTVRSERIRQTRDFRIRFWFREKTMEQEFAASQHSDHR
Ga0164308_121765731	3300012985	Soil	MMKLILKAGPNQMETLRRLRIEAAAIDKDVTVHSDRIRQMRDIRIRFWFREKTMQQEFAASLHSDPSHSGASGDETS*
Ga0164305_119335131	3300012989	Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPSDSGASGDKTS*
Ga0182024_114030881	3300014501	Permafrost	MKQIVWAGPNQMETLRRLKTAAEAIDKDVTVRSERIRQTKNFRMHFRFREKAMDQRFAASQLSDPSHSGASGDKKS*
Ga0137411_10048823	3300015052	Vadose Zone Soil	RFVSLMEGVSKSEGTFEMMKQILKAGPNQMETLRRLRAEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPLHSEASGDKTS*
Ga0137412_104566283	3300015242	Vadose Zone Soil	MEGVSKSEGTFEMMKQILKAGPNQMETLRRLRAEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDSLHSEASGDKTS*
Ga0137409_100325631	3300015245	Vadose Zone Soil	MEGVSKSEGTFEMMKQILKAGPNQMETLRRLRAEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPLHSEASGDKTS*
Ga0137403_105961272	3300015264	Vadose Zone Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQEFAASQHSDPSHAGASGDKTS*
Ga0132258_139595642	3300015371	Arabidopsis Rhizosphere	MFEMMKLILKAGPNQMETLRRLRTEAAAIDKDVTVHSDRIRQTRDIRIRFWFREKTMQQEFAASQHSDPSH*
Ga0182036_100811843	3300016270	Soil	MMKLILKASPNQMETLRRLRTDAAAIDKDVTIRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDTPHPGASRDKKN
Ga0182036_103449031	3300016270	Soil	MMKQILRAGPNQMETLRRLRTDAAAIDKDVTIRSERIRQTRDFRIRFWFREKKMEQKFAASQHLDPSPSGASDKTS
Ga0182041_104095263	3300016294	Soil	ETLRRLRTDAAAIDKDVTVRSERIRQTRDFRIRFWFREKVMEQRFAASLHADTPPPAASGDKKN
Ga0182034_108498501	3300016371	Soil	MMKLILKASPNQMETLRRLRTDAAAIDKDVTIRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDTPHPGAS
Ga0182034_116344741	3300016371	Soil	MMKQILKAGPNQMETLRRFRTDAAAIDKDVTVRSERIRQTRDFRTRFWFREKTMEQSFAASQHSDPTHSGASGDKTS
Ga0182034_116968381	3300016371	Soil	VRTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKAMEQTFAASQHSDPSDSGASGDKTS
Ga0182040_103031011	3300016387	Soil	NQMETLRRLRTDAAAIDKDVTIRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDTPHPGASGDRSSE
Ga0182037_102764152	3300016404	Soil	LREPVRISQRRVCPKSVRTFEMMKQILKAGPNQMETLRRLRTDAAAIDKDVTVRSERIRQTRDLRIRFWFREKTMEQSFAASQHSDPTHSSASGDNTS
Ga0190274_101655003	3300018476	Soil	MFEMMKLVLKAGPNQMETLRRLRTEAAAIDKDVTVHCDRIRQTRDFRICFWFREKTMQQKFAASQHSDPSHSGVSGDKTT
Ga0193713_10095693	3300019882	Soil	MMKQILKAGPNQMETLRRLRTEAEAIDKDVTVRSERIRQTRDFRVRFWFREKAMEQRFAASQHADASHPGASGDKKN
Ga0193755_11216743	3300020004	Soil	ESVPKSARTFEMMKQILKAGPNQMETLRRLRTEAEAIDKDVTVRSERIRQTRDFRVRFWFREKAMEQRFAASQHADASHPGASGDKKN
Ga0179592_104544781	3300020199	Vadose Zone Soil	VRTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPSHSGASGDKTS
Ga0210407_101122102	3300020579	Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQSFAASQHSDPTHSGASGDKTS
Ga0210403_1000990813	3300020580	Soil	MIKQILKAGPNQMETLRRLRTEAEAIDKDVTVRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDLLHSGASSDKAS
Ga0210403_101400542	3300020580	Soil	MLKQILKAGPNQMETLRRLRTEAAAIDKDVTVRGERIRQTRDFRIRFWFREKAMEQRFAASQHSDPSHSGASGDKTS
Ga0210403_114352261	3300020580	Soil	VPKSVRTFEKMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRVRFWFREKAMEQRFAASQHSDPS
Ga0210399_102261012	3300020581	Soil	MIKQILKAGPNQMETLRRLRTEAEAIDKDVTVRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDPSHSGASGDKAS
Ga0210395_105610702	3300020582	Soil	MKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQSFAASQHSDPTHSGASGDKTS
Ga0210401_112670742	3300020583	Soil	MMKQILKAGPNQMETLRRLRTEAATIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSD
Ga0210406_102186781	3300021168	Soil	MMKQILKAGPNQMETLRRLRTEAATIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPSHSGTSG
Ga0210406_104006531	3300021168	Soil	KQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQSFAASQHSDPTHSGASGDKTS
Ga0210406_104582871	3300021168	Soil	MIKQILKAGPNQMETLRRLRTEAEAIDKDVTVRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDPSHSGASGDKTS
Ga0210406_105851352	3300021168	Soil	LSRESVPKSVRTFEMMKQILKAGPNQMETLRRLRTEAEAIDKDVTVRSERIRQTRDFRVRFWFREKAMEERFAASQHSDPSDSGASGDKTS
Ga0210397_101661452	3300021403	Soil	RTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQSFAASQHSDPTHSGASGDKTS
Ga0210387_103416062	3300021405	Soil	MIKQILKAGPNQMETLRRLRTEAEAIDKDVTVRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDLLHS
Ga0210386_113337711	3300021406	Soil	ESVPKSLRTFEMIKQILKAGPNQMETLRRLRTEAEAIDKDVTVRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDLLHSGASSDKAS
Ga0210384_106441242	3300021432	Soil	VPKSVRTFEMMKQILKAGPNQMETLRRLRTEAEAIDKDVTVRSERIRQTRDFRVRFWFREKAMEERFAASQHSDPSDSGASGDKTS
Ga0210384_113519111	3300021432	Soil	QTETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRLWFREKTMEKAFAASQHSDPSHSGASGDKTS
Ga0210391_108787052	3300021433	Soil	MPKSQGTFEMKLVLRAGPNQMETLRRLRMAAEAIDKDVTVRSERIGQTRDFRVSLWFREKAMEQGFIASQHLDPSPSGASGDKTS
Ga0210392_111098491	3300021475	Soil	RTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQEFAASQNSDPSHSGASGDKTS
Ga0210402_100071512	3300021478	Soil	MMKQILKAGPNQMETLRRLRAEAAAIDKDVTVRSERIRQTMDFRIRFWFREKTMEKGFTVSQHSDPSHPGANGDKKS
Ga0210402_109278012	3300021478	Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFHKKAMEEGFAASLQSDPQHPGASGDKKS
Ga0242654_102925671	3300022726	Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFHKKAMEEGFAASLQSDPQHPGAS
Ga0179591_12296283	3300024347	Vadose Zone Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERTRQTRDFRIRFWFREKTMEQRFAASQHSDPSHSGASGDKTS
Ga0207699_100543443	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MMKQILKAGPNQMETLRRLRTEAATIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASKHSDPSHSGTSGDKTS
Ga0207684_101370134	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MMKKILKAGPNQMETLLRLRTEAAAIDKDVTVRSERIRQTRDFRVRFWFREKAMEQRFATSQHSDPSDSAANGDKTS
Ga0207684_101788894	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRVRFWFPEKAMEQRFSASQHSDPSDSGASGDKTS
Ga0207693_101853884	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MMKQILKAGPNQMETLRRLRTEAATIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPSH
Ga0207663_106440542	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MEGVPKSEGTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPSHL
Ga0257150_10449822	3300026356	Soil	MMKKILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRVRFWFREKAIEQRFAASQHSDPSDSGASGDKTS
Ga0257154_10654501	3300026467	Soil	MRNCSYLSTESVPKSVRTFEMMKKILKAGPNQMETLQRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKMMEQRFAASQHSDPSHSGASGDKTS
Ga0257147_10365771	3300026475	Soil	VAIKRNCSYLSTESVPKSVRTFEMMKQILKAGPNQMETLRRLRTEAEAIDKDVTVRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDPSHSGASGDKTS
Ga0257153_10380352	3300026490	Soil	MMKQILKAGPNQMETLRRLRTEAAVIDKDVTVRSDRIRQTRDFRIRFWFREKTMEQRFAASQHSHPSDSGASGDKTS
Ga0257159_10788171	3300026494	Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDATVRSERIRQTRDFRIRFWFREKTMEQGFAPSQHSDPSHSGASGDKTS
Ga0257161_10714441	3300026508	Soil	VRTFEMMKQILKAGPDQIKTLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKMMEQRFAASQHSDPSHSGASGDKTS
Ga0209648_101828033	3300026551	Grasslands Soil	GPNQMETLRRLRTAAEAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPSHSGASGDKTS
Ga0209648_102975441	3300026551	Grasslands Soil	VHGRIVKRNCSYLSIESVPKSVRTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPSHSGASGDKTS
Ga0179593_12001572	3300026555	Vadose Zone Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQEFAASQHSDSSHSGERR
Ga0209325_10386131	3300027050	Forest Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTKDFRIRFWFLEKAMEQRFAAPQHSDPSHSGASGDKTS
Ga0209179_10129031	3300027512	Vadose Zone Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPSHSGASGDKTS
Ga0209524_10037032	3300027521	Forest Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVKVRSERIRQTRDFRVRFWFREKAMEKGFAASQRSDRSHSGGSGDKTR
Ga0209180_103489412	3300027846	Vadose Zone Soil	ESVPKSVRTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQHSDPSHSGASGDKTS
Ga0209526_100093003	3300028047	Forest Soil	MMKQILKTGPNQMETLRRLRTEAAAIDKDVKVRSERIRQTRDFRVRFWFREKAMEKGFAASQRSDRSHSGGSGDKTR
Ga0137415_101814162	3300028536	Vadose Zone Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDPSHSGASGDKTS
Ga0222749_105104002	3300029636	Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRVRFWFREKAMEERFAASQHSDPSDSGASGDKTS
Ga0170822_125464912	3300031122	Forest Soil	MRNCSYLSTESVPKSVRTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKAMERRFAASQHSDPSDSGASGDKTS
Ga0170823_122806461	3300031128	Forest Soil	MFGTWENIKRSGSYLSAESVPKSVRTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQKFAASQNSDPSHSGTSGDKTS
Ga0307498_103674691	3300031170	Soil	ESVPKSVRTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDIRIRFWFREKTMEQEFAASQHSDSSHSGASGDKTS
Ga0170824_1223622931	3300031231	Forest Soil	MKQILKAGPKQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAPSQHSDPSDSGASGDKTS
Ga0318516_101601653	3300031543	Soil	MMKQILKAGPNQMETLRRLRTDAAAIDKDATIRSERIRQTRDFRIRFWFREKKMEQKFAASQHLDPSPSGASDKTS
Ga0318534_102264082	3300031544	Soil	MMKLILKASPNQMETLRRLRTDAAAIDKDVTIRSERIRQTRDFRIRFWFREKKMEQKFAASQHLDPSPSGASDKTS
Ga0318541_101497061	3300031545	Soil	MMKQILKASPNQMETLRRLRTDAAAIDKDVTVRSERIRQTRDFRIRFWFREKAMEQTFAASQHSDPSDSGASGDKTS
Ga0318538_101795461	3300031546	Soil	MMKQILKAGPNQMETLRRLRTDAAAIDKDATICSERIRQTRDFRIRFWFREKKMEQKFAASQHLDPSPSGASDKTS
Ga0318538_105182501	3300031546	Soil	PVRVSQRRVCPKSVRTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKAMEQTFAASQHSDPSDSGASGDKTS
Ga0318528_103272651	3300031561	Soil	MMKLILKASPNQMETLRRLRTDAAAIDKDVTIRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDTPHPGASGDRSSE
Ga0318515_105508851	3300031572	Soil	MMKLILKASPNQMETLRRLRTDAAAIDKDVTIRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDTPHPGASGDRS
Ga0310915_104638123	3300031573	Soil	EDIEMMKQILKASPNQMETLRRLRTDAAAIDKDVTVRSERIRQTRDFRIRFWFREKVMEQRFAASLHADTPPPAASGDKKN
Ga0318542_103783171	3300031668	Soil	MMKQILKAGPNQMEKLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQSFAASQHSDPTHSGASGD
Ga0310686_1068161051	3300031708	Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTGDFRIRFWFREKTMEQRFAASQHSDPSHSGASGDKTS
Ga0306917_111609102	3300031719	Soil	KASPNQMETLRRLRTDAAAIDKDVTVRSERIRQTRDFRIRFWFREKVMEQRFAASLHADTPPPAASGDKKN
Ga0306918_101628402	3300031744	Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQSFAASQHSDPTHSGASGDETS
Ga0306918_106504711	3300031744	Soil	MMKQILKAGPNQMETLRRLRTDAAAIDKDATIRSERIRQTRDFRIRFWFREKKMEQKFAASQHLD
Ga0318543_100266474	3300031777	Soil	LGYYRECSQILRTFEMMKQILKAGPNQMETLRRLRTDAAAIDKDATIRSERIRQTRDFRIRFWFREKKMEQKFAASQHLDPSPSGASDKTS
Ga0318566_102347512	3300031779	Soil	MMKQILKAGPNQMETLRRLRTDAAAIDKDATIRSERIRQTRDFRIRFWFREKKMEQKFAASQHLDPSRSGASDKTS
Ga0318565_100507343	3300031799	Soil	MMKQILKAGPNQMETLRRLRTDAAAIDKDVTVRSERIRQTRDLRIRFWFREKTMEQSFAASQHSDPTHSSASGDNTS
Ga0318497_101832934	3300031805	Soil	SPNQMETLRRLRTDAAAIDKDVTIRSERIRQTRDFRIRFWFREKKMEQKFAASQHLDPSPSGASDKTS
Ga0306925_104818902	3300031890	Soil	MMKQILKASPNQMETLRRLRTDAAAIDKDVTVRSERIRQTRDFRIRFWFREKVMEQRFAASLHADTPPPAASGDKKN
Ga0318520_102656331	3300031897	Soil	METLRRLRTDAAAIDKDATIRSERIRQTRDFRIRFWFREKKMEQKFAASQHLDPSPSGASDKTS
Ga0318520_106710392	3300031897	Soil	MKQILKAGPNQMETLRRLRTDAAAIDKDVTVRSERIRQTRDLRIRFWFREKTMEQSFAASQHSDPTHSSASGDNTS
Ga0306923_110703732	3300031910	Soil	MKQILKASPNQMETLRRLRTDAAAIDKDVTVRSERIRQTRDFRIRFWFREKVMEQRFAASLHADTPPPAASGDKKN
Ga0306921_102057572	3300031912	Soil	MMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKAMEQTFAASQHSDPSDSGASGDKTS
Ga0310912_100504394	3300031941	Soil	MMKLILKASPNQMETLRRLRTDAAAIDKDVTIRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDTPH
Ga0310916_113158411	3300031942	Soil	MMKQILRAGPNQMETLRRLRTDAAAIDKDVTIRSERIRQTRDFRVCFWFREKKLEQRFAASQHSDPSQVANDDKKG
Ga0306926_100994436	3300031954	Soil	MMKQILKAGPNQMEKLRRLRTEAAAIDKDVTVRSERIRQTRDLRIRFWFREKTMEQSFAASQHSDPTHSGASGDETS
Ga0307479_117798622	3300031962	Hardwood Forest Soil	MMKQILKAGPNQMETLRRLRTEAATIDKDVTVRSERIRQTRDFRIRFWFREKTMEQRFAASQH
Ga0318559_101994581	3300032039	Soil	MMKQILKAGPNQMETLRRLRTDAAAIDKDATIRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDTPHPGA
Ga0318549_103104242	3300032041	Soil	MMKQILKAGPNQMETLRRLRTDAAAIDKDATIRSERIRQTRDFRIRFWFREKKMEQKFAASQHLDPSPSG
Ga0318545_101239011	3300032042	Soil	MMKQILKAGPNQMETLRRLRTDAAAIDKDVTVRSERIRQTRDFRIRFWFREKAMEQRFAASQHSDTPHPGASGDRSSE
Ga0318505_104461311	3300032060	Soil	LRTFEMMKQILKAGPNQMETLRRLRTDAAAIDKDATIRSERIRQTRDFRIRFWFREKKMEQKFAASQHLDPSPSGASDKTS
Ga0306924_103922093	3300032076	Soil	SVPESVRTFEMMKQILKAGPNQMETLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKAMEQTFAASQHSDPSDSGASGDKTS
Ga0306924_105987191	3300032076	Soil	LREPVRISQRRVCPKSVRTFEMMKQILKAGPNQMEKLRRLRTEAAAIDKDVTVRSERIRQTRDFRIRFWFREKTMEQSFAASQHSDPTHSGASGDETS
Ga0306924_114209812	3300032076	Soil	MMKQILKAGPNQMETLRRLRTDAAAIDKDVTVRSERIRQTRDLRIRFWFREKTMEQSFAASQHSDPTHSSA
Ga0310914_112036991	3300033289	Soil	LREPVRISQRRVCPKSVRTFEMMKQILKAGPNQMEKLRRLRTEAAAIDKDVTVRSERIRQTRDLRIRFWFREKTMEQSFAASQHSDPTHSSASGDNTS
Ga0318519_106189712	3300033290	Soil	MMKQILKAGPNQMETLRRLRTDAAAIDKDATIRSERIRQTRDFRIRFWFREKKMEQKFAASQHLDPS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F040815

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences