Metagenome / Metatranscriptome Family F038304

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F038304
Family Type	Metagenome / Metatranscriptome
Number of Sequences	166
Average Sequence Length	62 residues
Representative Sequence	NWYPVAGFRLAVDVQYTRIETAFDGQTVSLSKTQGLRPTGSYTAKDQGILAVVFRAQRSFATSE
Number of Associated Samples	85
Number of Associated Scaffolds	166

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.20 %
% of genes near scaffold ends (potentially truncated)	95.18 %
% of genes from short scaffolds (< 2000 bps)	93.37 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.422 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (36.145 % of family members)
Environment Ontology (ENVO)	Unclassified (50.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.422 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 35.87% Coil/Unstructured: 64.13%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 166 Family Scaffolds
PF02530	Porin_2	9.04
PF08450	SGL	7.83
PF12697	Abhydrolase_6	5.42
PF01381	HTH_3	1.81
PF13545	HTH_Crp_2	1.20
PF14559	TPR_19	1.20
PF03401	TctC	0.60
PF00188	CAP	0.60
PF13561	adh_short_C2	0.60
PF13432	TPR_16	0.60
PF05235	CHAD	0.60
PF09084	NMT1	0.60
PF13186	SPASM	0.60
PF01740	STAS	0.60
PF04389	Peptidase_M28	0.60
PF01061	ABC2_membrane	0.60
PF01022	HTH_5	0.60
PF13290	CHB_HEX_C_1	0.60
PF00933	Glyco_hydro_3	0.60
PF07730	HisKA_3	0.60
PF07690	MFS_1	0.60

COG ID	Name	Functional Category	% Frequency in 166 Family Scaffolds
COG3637	Opacity protein LomR and related surface antigens	Cell wall/membrane/envelope biogenesis [M]	9.04
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	7.83
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	7.83
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.60
COG1472	Periplasmic beta-glucosidase and related glycosidases	Carbohydrate transport and metabolism [G]	0.60
COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	Cell cycle control, cell division, chromosome partitioning [D]	0.60
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	0.60
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.60
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.60
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.60
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.60
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.60
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.60
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	0.60

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.42 %
Unclassified	root	N/A	44.58 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.42 %
Unclassified	root	N/A	44.58 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.42 %
Unclassified	root	N/A	44.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.58 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	41.57 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.60 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.58 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	35.54 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.60 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.60 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.58 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17.47 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.41 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.60 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.60 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.58 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	8.43 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.23 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.81 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.60 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.60 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.58 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	8.43 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.02 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.81 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	0.60 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.60 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.60 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.58 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	8.43 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	4.22 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.81 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.60 %
Nitrobacter winogradskyi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter winogradskyi	0.60 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.60 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.60 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.58 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	8.43 %
Bradyrhizobium sp. DOA9	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. DOA9	1.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.81 %
Bradyrhizobium sp. WSM1417	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM1417	1.20 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.60 %
Bradyrhizobium sp. STM 3843	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	0.60 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.60 %
Nitrobacter winogradskyi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter winogradskyi	0.60 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.60 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.60 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.60 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003911\|JGI25405J52794_10107452	Not Available	625	Open in IMG/M
3300003997\|Ga0055466_10263796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM1417	521	Open in IMG/M
3300004081\|Ga0063454_101377030	Not Available	596	Open in IMG/M
3300004782\|Ga0062382_10436455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. DOA9	622	Open in IMG/M
3300005171\|Ga0066677_10782383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	529	Open in IMG/M
3300005332\|Ga0066388_100580712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1746	Open in IMG/M
3300005332\|Ga0066388_100656368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1663	Open in IMG/M
3300005332\|Ga0066388_102095212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1017	Open in IMG/M
3300005332\|Ga0066388_102954567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	869	Open in IMG/M
3300005332\|Ga0066388_103013421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	861	Open in IMG/M
3300005332\|Ga0066388_103553111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	796	Open in IMG/M
3300005332\|Ga0066388_107044281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. DOA9	566	Open in IMG/M
3300005332\|Ga0066388_108576764	Not Available	509	Open in IMG/M
3300005332\|Ga0066388_108788120	Not Available	501	Open in IMG/M
3300005354\|Ga0070675_102263538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	500	Open in IMG/M
3300005615\|Ga0070702_101356621	Not Available	580	Open in IMG/M
3300005713\|Ga0066905_100510042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1002	Open in IMG/M
3300005713\|Ga0066905_100638172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	906	Open in IMG/M
3300005713\|Ga0066905_101183467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter winogradskyi	682	Open in IMG/M
3300005713\|Ga0066905_102335361	Not Available	500	Open in IMG/M
3300005764\|Ga0066903_100166657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3210	Open in IMG/M
3300005764\|Ga0066903_101418959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1306	Open in IMG/M
3300005764\|Ga0066903_101749613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1185	Open in IMG/M
3300005764\|Ga0066903_103673158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	826	Open in IMG/M
3300005764\|Ga0066903_105382830	Not Available	676	Open in IMG/M
3300005764\|Ga0066903_105928424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	641	Open in IMG/M
3300005841\|Ga0068863_101138915	Not Available	785	Open in IMG/M
3300005937\|Ga0081455_10083175	All Organisms → cellular organisms → Bacteria → Proteobacteria	2616	Open in IMG/M
3300006046\|Ga0066652_101967036	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	522	Open in IMG/M
3300006178\|Ga0075367_10909801	All Organisms → cellular organisms → Bacteria → Proteobacteria	561	Open in IMG/M
3300006237\|Ga0097621_101018812	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300006358\|Ga0068871_101411977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	656	Open in IMG/M
3300006755\|Ga0079222_11507154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM1417	631	Open in IMG/M
3300006755\|Ga0079222_11691305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	606	Open in IMG/M
3300006796\|Ga0066665_11392275	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300006845\|Ga0075421_100307560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1925	Open in IMG/M
3300007255\|Ga0099791_10534660	Not Available	570	Open in IMG/M
3300009012\|Ga0066710_103651419	Not Available	579	Open in IMG/M
3300009137\|Ga0066709_104312065	Not Available	519	Open in IMG/M
3300009143\|Ga0099792_10034226	All Organisms → cellular organisms → Bacteria	2377	Open in IMG/M
3300009143\|Ga0099792_10586331	Not Available	709	Open in IMG/M
3300009147\|Ga0114129_12768444	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300009162\|Ga0075423_11416384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	744	Open in IMG/M
3300009176\|Ga0105242_11264221	Not Available	760	Open in IMG/M
3300009177\|Ga0105248_11062818	All Organisms → cellular organisms → Bacteria → Proteobacteria	915	Open in IMG/M
3300009792\|Ga0126374_10800662	Not Available	720	Open in IMG/M
3300009792\|Ga0126374_11656709	Not Available	530	Open in IMG/M
3300009792\|Ga0126374_11732322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	520	Open in IMG/M
3300010043\|Ga0126380_11329144	Not Available	627	Open in IMG/M
3300010043\|Ga0126380_11515409	Not Available	594	Open in IMG/M
3300010046\|Ga0126384_10773829	Not Available	857	Open in IMG/M
3300010046\|Ga0126384_11402927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	651	Open in IMG/M
3300010046\|Ga0126384_11560290	Not Available	620	Open in IMG/M
3300010046\|Ga0126384_11941626	Not Available	562	Open in IMG/M
3300010046\|Ga0126384_12282101	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300010047\|Ga0126382_10129941	All Organisms → cellular organisms → Bacteria	1689	Open in IMG/M
3300010047\|Ga0126382_10154798	All Organisms → cellular organisms → Bacteria	1575	Open in IMG/M
3300010047\|Ga0126382_10428186	Not Available	1042	Open in IMG/M
3300010047\|Ga0126382_10436282	Not Available	1033	Open in IMG/M
3300010047\|Ga0126382_10465553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1006	Open in IMG/M
3300010047\|Ga0126382_10617985	Not Available	895	Open in IMG/M
3300010047\|Ga0126382_10813265	Not Available	798	Open in IMG/M
3300010047\|Ga0126382_11065035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. DOA9	714	Open in IMG/M
3300010047\|Ga0126382_11323397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	653	Open in IMG/M
3300010047\|Ga0126382_11431769	Not Available	632	Open in IMG/M
3300010047\|Ga0126382_11514179	Not Available	618	Open in IMG/M
3300010047\|Ga0126382_11847384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	570	Open in IMG/M
3300010047\|Ga0126382_12525337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	501	Open in IMG/M
3300010159\|Ga0099796_10006070	All Organisms → cellular organisms → Bacteria	3070	Open in IMG/M
3300010159\|Ga0099796_10447231	Not Available	574	Open in IMG/M
3300010358\|Ga0126370_10737004	Not Available	871	Open in IMG/M
3300010358\|Ga0126370_10775434	Not Available	852	Open in IMG/M
3300010358\|Ga0126370_11142062	Not Available	721	Open in IMG/M
3300010358\|Ga0126370_11812359	Not Available	591	Open in IMG/M
3300010358\|Ga0126370_11916576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	577	Open in IMG/M
3300010359\|Ga0126376_10814341	All Organisms → cellular organisms → Bacteria → Proteobacteria	913	Open in IMG/M
3300010359\|Ga0126376_11178090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	780	Open in IMG/M
3300010359\|Ga0126376_11344090	Not Available	737	Open in IMG/M
3300010359\|Ga0126376_11361395	Not Available	733	Open in IMG/M
3300010360\|Ga0126372_10292902	Not Available	1425	Open in IMG/M
3300010360\|Ga0126372_10299513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1412	Open in IMG/M
3300010360\|Ga0126372_12082675	Not Available	615	Open in IMG/M
3300010360\|Ga0126372_12177110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	603	Open in IMG/M
3300010362\|Ga0126377_10002014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13742	Open in IMG/M
3300010362\|Ga0126377_10523582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1220	Open in IMG/M
3300010362\|Ga0126377_10856888	Not Available	970	Open in IMG/M
3300010362\|Ga0126377_10992810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	905	Open in IMG/M
3300010362\|Ga0126377_11394635	Not Available	773	Open in IMG/M
3300010362\|Ga0126377_11426197	Not Available	766	Open in IMG/M
3300010362\|Ga0126377_11473861	Not Available	754	Open in IMG/M
3300010362\|Ga0126377_11557554	Not Available	735	Open in IMG/M
3300010362\|Ga0126377_12064187	Not Available	646	Open in IMG/M
3300010362\|Ga0126377_12631690	Not Available	578	Open in IMG/M
3300010362\|Ga0126377_13437981	Not Available	512	Open in IMG/M
3300010366\|Ga0126379_11576467	Not Available	762	Open in IMG/M
3300010366\|Ga0126379_11854135	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300010366\|Ga0126379_12062680	Not Available	672	Open in IMG/M
3300010366\|Ga0126379_13094119	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300010398\|Ga0126383_13095276	Not Available	543	Open in IMG/M
3300010403\|Ga0134123_10056858	Not Available	2966	Open in IMG/M
3300010403\|Ga0134123_10889552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	895	Open in IMG/M
3300012200\|Ga0137382_10762602	Not Available	695	Open in IMG/M
3300012204\|Ga0137374_10622823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	820	Open in IMG/M
3300012205\|Ga0137362_10439135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1130	Open in IMG/M
3300012209\|Ga0137379_10366381	Not Available	1350	Open in IMG/M
3300012349\|Ga0137387_10106148	All Organisms → cellular organisms → Bacteria	1963	Open in IMG/M
3300012349\|Ga0137387_10787313	Not Available	688	Open in IMG/M
3300012351\|Ga0137386_10022188	All Organisms → cellular organisms → Bacteria	4302	Open in IMG/M
3300012360\|Ga0137375_10030536	All Organisms → cellular organisms → Bacteria	6119	Open in IMG/M
3300012360\|Ga0137375_10417971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1166	Open in IMG/M
3300012361\|Ga0137360_11572510	Not Available	562	Open in IMG/M
3300012362\|Ga0137361_11130981	Not Available	704	Open in IMG/M
3300012469\|Ga0150984_105274189	Not Available	581	Open in IMG/M
3300012925\|Ga0137419_10854555	Not Available	747	Open in IMG/M
3300012925\|Ga0137419_11029314	Not Available	683	Open in IMG/M
3300012927\|Ga0137416_12033951	Not Available	527	Open in IMG/M
3300012927\|Ga0137416_12098999	Not Available	519	Open in IMG/M
3300012929\|Ga0137404_11232406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	688	Open in IMG/M
3300012930\|Ga0137407_12353343	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300012930\|Ga0137407_12375948	Not Available	507	Open in IMG/M
3300012948\|Ga0126375_10010291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3913	Open in IMG/M
3300012948\|Ga0126375_10498426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	907	Open in IMG/M
3300012948\|Ga0126375_11202435	Not Available	631	Open in IMG/M
3300012948\|Ga0126375_11710110	Not Available	546	Open in IMG/M
3300012951\|Ga0164300_10419927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	741	Open in IMG/M
3300012971\|Ga0126369_11006060	Not Available	921	Open in IMG/M
3300012971\|Ga0126369_11106553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	881	Open in IMG/M
3300012971\|Ga0126369_11263506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	828	Open in IMG/M
3300012971\|Ga0126369_12225390	Not Available	635	Open in IMG/M
3300012987\|Ga0164307_10185902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1402	Open in IMG/M
3300014969\|Ga0157376_10795636	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300014969\|Ga0157376_10956162	All Organisms → cellular organisms → Bacteria → Proteobacteria	877	Open in IMG/M
3300015052\|Ga0137411_1320751	Not Available	5050	Open in IMG/M
3300015372\|Ga0132256_102741269	Not Available	592	Open in IMG/M
3300015372\|Ga0132256_103429770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	533	Open in IMG/M
3300015372\|Ga0132256_103639555	Not Available	518	Open in IMG/M
3300015373\|Ga0132257_104012899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	535	Open in IMG/M
3300015374\|Ga0132255_101350095	All Organisms → cellular organisms → Bacteria → Proteobacteria	1076	Open in IMG/M
3300018076\|Ga0184609_10069519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1539	Open in IMG/M
3300018081\|Ga0184625_10163648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1163	Open in IMG/M
3300018422\|Ga0190265_11774525	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300019880\|Ga0193712_1123009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	548	Open in IMG/M
3300019886\|Ga0193727_1064966	Not Available	1142	Open in IMG/M
3300025915\|Ga0207693_11275993	Not Available	550	Open in IMG/M
3300025924\|Ga0207694_11072727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	682	Open in IMG/M
3300025941\|Ga0207711_11817132	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300027787\|Ga0209074_10349846	Not Available	605	Open in IMG/M
3300027882\|Ga0209590_10875799	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300027903\|Ga0209488_10919141	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300027909\|Ga0209382_10405963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1517	Open in IMG/M
3300028381\|Ga0268264_11754783	All Organisms → cellular organisms → Bacteria → Proteobacteria	631	Open in IMG/M
3300031099\|Ga0308181_1158284	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300031152\|Ga0307501_10047984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	945	Open in IMG/M
3300031184\|Ga0307499_10202710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	611	Open in IMG/M
3300031184\|Ga0307499_10280398	Not Available	542	Open in IMG/M
3300031198\|Ga0307500_10006678	All Organisms → cellular organisms → Bacteria	2376	Open in IMG/M
3300031198\|Ga0307500_10055395	All Organisms → cellular organisms → Bacteria → Proteobacteria	969	Open in IMG/M
3300031226\|Ga0307497_10113951	Not Available	1074	Open in IMG/M
3300031226\|Ga0307497_10715267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300031421\|Ga0308194_10166749	Not Available	691	Open in IMG/M
3300031421\|Ga0308194_10384867	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300031740\|Ga0307468_101531386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	619	Open in IMG/M
3300032174\|Ga0307470_10736878	Not Available	756	Open in IMG/M
3300032180\|Ga0307471_101370023	Not Available	868	Open in IMG/M
3300032180\|Ga0307471_102894937	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300034090\|Ga0326723_0527939	Not Available	543	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.54%
Host-Associated	Host-Associated	14.46%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.13%
Plants	Host-Associated → Plants	14.46%
Aquatic	Environmental → Aquatic	2.41%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.53%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.04%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.61%
Roots	Host-Associated → Plants → Roots	1.81%
Sediment	Environmental → Aquatic → Sediment	1.20%
Freshwater	Environmental → Aquatic → Freshwater	0.60%
Marine	Environmental → Aquatic → Marine	0.60%
Peat	Environmental → Terrestrial → Peat	0.60%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.67%
Loam	Environmental → Terrestrial → Soil → Loam	13.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.02%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.01%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.20%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.20%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.20%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.60%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.60%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.60%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.60%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	62.05%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.02%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.01%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.41%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.41%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.20%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.20%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.20%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.20%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.20%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.60%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.60%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.60%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.60%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	36.14%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.66%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.04%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.41%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.20%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.20%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.20%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.20%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.20%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.20%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.20%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.20%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.20%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.20%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.20%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.60%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.60%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.60%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.60%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.60%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.60%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300003997	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004782	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300019880	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a1	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25405J52794_101074521	3300003911	Tabebuia Heterophylla Rhizosphere	VNNWYPVAGFRLAVDVLYTRIETAFDGQQISLAKTTGARPTGLYTAKDQGILSVVFRAQRAFATAD*
Ga0055466_102637961	3300003997	Natural And Restored Wetlands	WWPVAGLRFAVDVLYTGVETAFEGQTITLTKTQGARPTGAYLAKDQGILSVMVRAQRHWGGGD*
Ga0063454_1013770301	3300004081	Soil	GFRLAVDVLYTRIETAFEGQTVSLSKTTGLRPTGSYTAKDQGILAVTFRAQRSFVTE*
Ga0062382_104364551	3300004782	Wetland Sediment	NWYPVAGFRLAVDVLYTRIETAYEGQTVSLNKAQGARPTGLYTAKDQGILSVVFRAQRSFATGE*
Ga0066677_107823832	3300005171	Soil	FRLAVDVLYTRVETAFEGQTVTLGKTQGLRPTGSYTAKDQGILAVTFRAQRAFVTGD*
Ga0066388_1005807121	3300005332	Tropical Forest Soil	MYTRVQTAFDGQTITLAKSIGARPTGTYLAKDQGILSVMFRAQRAFVTSE*
Ga0066388_1006563682	3300005332	Tropical Forest Soil	LYTNIDTAFDGQTVTLGKTQGARPTGAYLMKDRGILSIAFRAQRTWGAGGGD*
Ga0066388_1020952122	3300005332	Tropical Forest Soil	VPGFRLAVDVLYTRDVTAFDGAQISLSKGIGARPTGLYTAKDQGIVSVVFRAQRAFASSD
Ga0066388_1029545673	3300005332	Tropical Forest Soil	TDWYPVAGFRLAVEVLYARVQTAFDGQTVTLGKAQGARPTGTYTAKDLGILSIAFRAQRAFATGE*
Ga0066388_1030134211	3300005332	Tropical Forest Soil	MVNNWYPVSGFRLAVDVLYTRIETNFDRQTITLNKTQGARATGLYTAKDDGILSVMFRAQRNFVTE*
Ga0066388_1035531112	3300005332	Tropical Forest Soil	WTVGAVTNWYPVAGFRLAVDVQYTRIETAMDGQTISLSKTQGLRPSGVYTAKDQGILAAVFRAQRAFASSD*
Ga0066388_1070442811	3300005332	Tropical Forest Soil	MVNNWYPVAGFRLAVDVLYTRIETAFDGQQISLAKTVGARPTGAYTAKDQGILSVVFRAQRAFATGE*
Ga0066388_1085767641	3300005332	Tropical Forest Soil	GAVTNWYPVAGFRLAVDVLYTRVETAFDGQQVSLSKTQGLRPTGLYTAKDQGILAVTFRAQRTFAAGN*
Ga0066388_1087881201	3300005332	Tropical Forest Soil	PVPGFRLAVDVLYTRDVTAFDGAQISLSKGIGARPTGLYTAKDQGIVSVVFRAQRAFASTD*
Ga0070675_1022635381	3300005354	Miscanthus Rhizosphere	NWFPAPGFRLAVDVAYSRVETAFDGETVTLSKAAGLRPTGTYLAKDQGIVSVMFRAYRSFATGE*
Ga0070702_1013566211	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	NNWFPAPGFRLAVDVAYSRVETAFDGETVTLSKAAGLRPTGTYLAKDQGIVSVMFRAYRSFATGE*
Ga0066905_1005100421	3300005713	Tropical Forest Soil	DWYPVAGFRLAVDVAYFRIETAFDGQLVTLTKAQGARPTGTYLAKDEGILAVVFRAQRSFATGE*
Ga0066905_1006381722	3300005713	Tropical Forest Soil	GMVNNWYPVAGFRLAVDVLYTRVETGFEGQTLTLNKTQGARPTGTYFAKDDGILAVTFRAQRSFATSE*
Ga0066905_1011834671	3300005713	Tropical Forest Soil	WYPVAGFRLAVDVVYTRIETAFEGETVSLSKAVGARPTGSYLAKDQGILAVTFRAQRSFATAD*
Ga0066905_1023353611	3300005713	Tropical Forest Soil	RLAVDVLYTRVETGFDGQTLTLSKTQGARPTGTYFAKDDGILAVTFRAQRSFATSE*
Ga0066903_1001666571	3300005764	Tropical Forest Soil	PVSGFRLAVDVLWTQVDTAFNGQTVSLSKAQGARPTGNYTAKDLGILSVMFRAQRNFVTE
Ga0066903_1014189592	3300005764	Tropical Forest Soil	GTHTDWYPVAGFRLAAEVTYTRVMTNFDGQTVTLTKTQGARPTGVYTAKDDGVVTVSFRAVRSFVSGGE*
Ga0066903_1017496132	3300005764	Tropical Forest Soil	TDWYPVPNFRLAVEVLYTQIGTAFDGAQITLSKAIGARPTGVYTARDQGIVSVVFRAQRDF*
Ga0066903_1036731582	3300005764	Tropical Forest Soil	YWTIGTHSDWYPVPGFRLAVDVLYTRIETAFDGQTISLSKAQGARPTGLYTAKDQGIVSVVFRAQRLFGTGD*
Ga0066903_1053828301	3300005764	Tropical Forest Soil	GMVNNWYPVAGFRLAVDVLYTRVETNMDGQTLTLTKTQGARPTGTYFAKDDGILAVTFRAQRSFATSE*
Ga0066903_1059284243	3300005764	Tropical Forest Soil	VQWTEIQTAFDGQTITLSKTQGARPTGTYFPKDDGILAVVFRAQRTFATGE*
Ga0068863_1011389151	3300005841	Switchgrass Rhizosphere	GFRLAVDVQYTRIETAFEGQTISLSKTQGLRPTGSYLAKDQGILAVTFRAQRSFVTE*
Ga0081455_100831754	3300005937	Tabebuia Heterophylla Rhizosphere	DVAYFRIETAFEGQQISLAKTTGARPTGLYTAKDQGILAVVFRAQRAFATGE*
Ga0066652_1019670361	3300006046	Soil	WTVGAVTNWYPVAGFRLAVDVQYTRIETAFEGQTVTLSKAQGLRPSGVYTAKDQGIISVIFRAQRAFASGE*
Ga0075367_109098011	3300006178	Populus Endosphere	WFPVPGFRLALEVDYIRVETAFDGQLISLGKTQGLRPTGIYTAKDQGIISVMFRAQPAFASGE*
Ga0097621_1010188121	3300006237	Miscanthus Rhizosphere	DWYPVPDFRLAVEVLYTRIETAFDGQTVALGKTQGLRPTGLYTAKDQGILSVGFRAVRSFASGN*
Ga0068871_1014119771	3300006358	Miscanthus Rhizosphere	WYPVAGFRLAVDVQYTRIETAMDGQTLSLSKTQGLRPTGVYTAKDQGILAVVFRAQRSFATGD*
Ga0079222_115071541	3300006755	Agricultural Soil	DPGYNYWSVGAVTNWYPVAGFRLAVDVIYVRVETPFEGQLVSLSKTQGLRPTGIYTATDQGILAVTFRAQRSFATGE*
Ga0079222_116913052	3300006755	Agricultural Soil	WYPVAGFRLAVDVQYTRVETAFEGQTISLSKAQGLRPTGSYTAKDQGILAVTFRAQRSFVTE*
Ga0066665_113922751	3300006796	Soil	MVNNWYPVAGFRLAVDVLYTRVETAFEGQTVTLSKTVGLRPTGNYTAKDLGNLSVVFRAQRSFATE*
Ga0075421_1003075601	3300006845	Populus Rhizosphere	WQVGMVNNWYPVAGFRLAVDVQYTRIETAFEGQTLSLSKTQGLRPTGSYLAKDQGILAVTFRAQRSFVTE*
Ga0099791_105346601	3300007255	Vadose Zone Soil	MPGFRLAVEVLYLNVDTAFKGAQITLSKAIGGRPTGAYTAKDQGILAVYFRASRRFPAAE
Ga0066710_1036514191	3300009012	Grasslands Soil	VLYTRVETAFDGQSVSLSKTVGLRPTGSYTAKDQGILAVTFRAQRSFATSE
Ga0066709_1043120651	3300009137	Grasslands Soil	DVLYTRVESAFDGQTVSLSKTQGLRPSGSYTAKDQGILAVTFRAQRSFATSE*
Ga0099792_100342263	3300009143	Vadose Zone Soil	VQYTRIETAFEGQTVTLSKTVGLRPTGTYTAKDQGILSVVFRAQRSFATGE*
Ga0099792_105863311	3300009143	Vadose Zone Soil	DVQYTRIETAFEGQTVTLSKTVGLRPTGTYTAKDQGILSVVFRAQRSFATSE*
Ga0114129_127684441	3300009147	Populus Rhizosphere	VGTHTDWYPVPGFRLAVEVLYTRIETAFDGQTVTLSKAQGLRPTGLYTAKDQGIISVGFRAVRSFATGGE*
Ga0075423_114163842	3300009162	Populus Rhizosphere	FRLAVDVLYTRIETALDGQQVSLGKAQGLRPTGNYTAKDQGILSVVFRAQRSFATGD*
Ga0105242_112642212	3300009176	Miscanthus Rhizosphere	VPDFRLAVEVLYTRIETAFDGQTVALGKTQGLRPTGLYTAKDQGILSVGFRAVRSFASGN
Ga0105248_110628182	3300009177	Switchgrass Rhizosphere	NNWFPVPGLRLALEVDYTRVETAFDGQTVSLSKTQGLRPTGLYTAKDQGIISVMFRAQRSFAAGE*
Ga0126374_108006622	3300009792	Tropical Forest Soil	DVLYTRVETAFDGQTLSLSKASGLRPTGVYTAKDQGILSVVFRAQRAFATAD*
Ga0126374_116567091	3300009792	Tropical Forest Soil	NNWYPVAGFRLAVDVLYTRVETAFEGQTVSLAKPVGARPTGNYLAKDQGILAVTFRAQRAFVTSD*
Ga0126374_117323221	3300009792	Tropical Forest Soil	GFRLAVDVLYTRIETAFDGQQITLTKAQGARPTGLYTARDEGIVSVVFRAQRSFATGN*
Ga0126380_113291441	3300010043	Tropical Forest Soil	VIYARVESAFDGQTVTLSKTQGLRPTGLYLAKDQGILAVTFRAQRSFATGE*
Ga0126380_115154091	3300010043	Tropical Forest Soil	EVLYSRVETAFEGQTLTLTKTQGARPTGTYTARDDGIVSVGFRAVRTFGTGE*
Ga0126384_107738291	3300010046	Tropical Forest Soil	NLWVMGTHTDWYPVAGFRLAAEVTYTRVMTNFDGQTVTLTKTQGARPTGVYTAKDDGVVTVSFRAVRSFVSGGE*
Ga0126384_114029272	3300010046	Tropical Forest Soil	FWTVGMVNNWYPVAGFRLAVDVLYTRIETGFDGQTITLAKTQGARPTGAYTAKDDGILSVVFRAQRAFATGE*
Ga0126384_115602902	3300010046	Tropical Forest Soil	VLYTRIETAFDGQTVTLSKAQGLRPTGLYTAKDQGIVSVGFRAVRSFATGN*
Ga0126384_119416262	3300010046	Tropical Forest Soil	GFRLAVDVLYTRIETGFDGQTITLSKTQGARPTGSYTAKDDGILSVMFRAQRNFVTE*
Ga0126384_122821012	3300010046	Tropical Forest Soil	AVTNWYPVAGFRLAVDVQYTRIETAMDGQQVTLAKTQGLRPTGVYTAKDQGILAVTFRAQRSFVTE*
Ga0126382_101299413	3300010047	Tropical Forest Soil	VLYTRIETNMDGQTLTLTKTQGARPAGTYTAKDDGILSVVFRAQRAFATGE*
Ga0126382_101547982	3300010047	Tropical Forest Soil	YPVASFRLAVDVLYTRIETAFEGQAVTLNKTQGARPTGIYTAQDQGIVSVIFRAQRSFASGN*
Ga0126382_104281862	3300010047	Tropical Forest Soil	DWYPVPGFRLAVEVLYTRVETAFEGELVTLTKTQGARPTGPYTARDQGILSVHFRAQRAFASGD*
Ga0126382_104362823	3300010047	Tropical Forest Soil	GTHTDWYPVAGFRLAVEVNYTRVESNFAGQTVTLNKTQGARPTGTYTARDDGILAAGFRAYRSFVTGE*
Ga0126382_104655531	3300010047	Tropical Forest Soil	DWYPVAGFRLAVEVNYTRVETNMDGQTLTLTKTQGARPTGTYFAKDDGILAAGFRAYRSFATAGE*
Ga0126382_106179851	3300010047	Tropical Forest Soil	FRLAVETLYTRVETGFDGQTLTLNKTQGARPTGTYTAKDDGILSVMFRAQRNFVTE*
Ga0126382_108132651	3300010047	Tropical Forest Soil	DVLYTRVETGFDGQQITLTKTQGARPTGAYTAKDDGILSVTFRAQRSFATSE*
Ga0126382_110650352	3300010047	Tropical Forest Soil	YPVAEFRLAVDVQYVRIESAFDGQTISLAKAQGARPTGLYTAKDQGILAVVFRAQRSFATGN*
Ga0126382_113233972	3300010047	Tropical Forest Soil	NNWYPVAGFRLAVDVVYTRIETGFVGQTITIAKIAAGGRPTGSYVAKDQGILAFTFRAQRAFATTD*
Ga0126382_114317691	3300010047	Tropical Forest Soil	NWYPVAGFRLAVDVQYTRIETAFDGQTVSLSKTQGLRPTGSYTAKDQGILAVVFRAQRSFATSE*
Ga0126382_115141791	3300010047	Tropical Forest Soil	WTVGMVNNWYPVAGFRLAVDVLYTRIETNMDGQTLTLTKTQGARPTGTYTAKDDGILAVTFRAQRSFATSE*
Ga0126382_118473841	3300010047	Tropical Forest Soil	FNFWTVGTHTDWYPVPGFRLAVDLLYTRIETAFEGQLVTLTKASGARPTGTYTARDDGVLSVVFRAQRAFGTGE*
Ga0126382_125253371	3300010047	Tropical Forest Soil	PSFTFWMIGTHTDWYPVPGFRLAAEVQWTRIETAFDGAQISLAKTQGARPTGLYTARNEGIVSAIFRAQRSFATGD*
Ga0099796_100060701	3300010159	Vadose Zone Soil	RLAVDVQYTRIETAFEGQTVTLSKTVGLRPTGTYTAKDQGILSVVFRAQRSFATGE*
Ga0099796_104472312	3300010159	Vadose Zone Soil	RLAVDVQYTRIETAFEGQTVTLSKTVGLRPTGTYTAKDQGILSVVFRAQRSFATSE*
Ga0126370_107370041	3300010358	Tropical Forest Soil	GFNFWTLGTHTDWYPVAGFRLAVEVLYARVETAFDGQTISLNKATGARPTGLYTARDLGIWSVHFRAQRAFASGE*
Ga0126370_107754343	3300010358	Tropical Forest Soil	YPVSGFRLAVDVLYTRIETGFDGQTITLNKTQGARPTGSYTAKDDGILSVMFRAQRNFVTE*
Ga0126370_111420621	3300010358	Tropical Forest Soil	TCDPGYNLWVVGTHTDWYPVVGWRLAVELTYTRVESNMSGETVTLNKTQGARPTGVYTAKDDGIATVSFRVQRAFVSGE*
Ga0126370_118123592	3300010358	Tropical Forest Soil	VLYTRVETGFDGQQITLTKTQGARPTGAYTAKDDGILSVTFRAQRAFVTSD*
Ga0126370_119165761	3300010358	Tropical Forest Soil	GFNYWTIGTHSDWYPVPGFRLGVDVLYTRIQTAFDGQTISLSKAQGARPTGNYTAKDQGILSVVFRAQRAFGTGE*
Ga0126376_108143412	3300010359	Tropical Forest Soil	LYTRIETNFDGQTVTLFKTQGARPTGAYTAKDDGILSVMFRAQRNFVTE*
Ga0126376_111780902	3300010359	Tropical Forest Soil	FRLAVDVLYTRIETGFDGQTITLAKTQGARPTGAYTAKDDGILSVVFRAQRAFATGE*
Ga0126376_113440902	3300010359	Tropical Forest Soil	PVAGFRLAVDVIYTRVETAFDGQTVSLGKTTGLRPTGLYTARDMGILAVTFRAQRSFVTGE*
Ga0126376_113613952	3300010359	Tropical Forest Soil	GFRLAVEVLYLRTESAFDGQIVSLSKAQGLRPTGLYTARDQGIWSVHFRAQRAFASGE*
Ga0126372_102929023	3300010360	Tropical Forest Soil	VAGFRLAVEVNYTRVGTAFDGQSVTLGKTQGARPTGVYTAKDQGIIAVGFRAVRSFASSGE*
Ga0126372_102995132	3300010360	Tropical Forest Soil	FNYWTVGTHSDWYPVPGFRLAVDVLYVRVETGFDGQTITLNKAQGARPTGLYTAKDDGILSVVFRAQRQFGTGE*
Ga0126372_120826752	3300010360	Tropical Forest Soil	PVAGFRLAVDVIYTRVETAFDGQSVSLSKTTGLRPSGVYTGKDQGILAVTFRAQRSFVTE
Ga0126372_121771101	3300010360	Tropical Forest Soil	YWTLGSHSDWYPVPGFRLAVDVLYTRIETAFDGQTISLSKAQGARPTGLYTAKDQGIVSVVFRAQRLFGTGD*
Ga0126377_100020141	3300010362	Tropical Forest Soil	RLAVDVLYTRIETGFEGQSLSLSKTQGLRPSGTYTAKDQGILSVVFRAQRSFATGE*
Ga0126377_105235823	3300010362	Tropical Forest Soil	VDVEWVKIETAFAGQQVTLGKAIGLRPTGIYTAKDLGNLSVVFRAQRVFGGAD*
Ga0126377_108568883	3300010362	Tropical Forest Soil	GTHTDWYPVAGFRLAVDVMYSRIETMFDGQAITLAKTQGARPTGAYTAKDDGILSVMFRAQRAFATTE*
Ga0126377_109928102	3300010362	Tropical Forest Soil	GFNFWTVGAVTNWYPVAGFRLAVDVLYTRVESAFDGQTVSLSKTTGLRPSGLYTAKDQGILAVTFRAQRAFVTGD*
Ga0126377_113946351	3300010362	Tropical Forest Soil	YPVPGFRLAVDVLYTRDVTAFDGAQITLAKGIGARPTGVYTAKDQGIVSVVFRAQRAFATGGE*
Ga0126377_114261971	3300010362	Tropical Forest Soil	RLAVDVLYTRIETGFEGQSLSLSKTQGLRPSGTYTAKDQGILAVTFRAQRSFATSE*
Ga0126377_114738611	3300010362	Tropical Forest Soil	DWYPVPGFRLAVEVLYSHIETAFEGQTITLNKTQGARPTGAYTAKDDGIVSVGFRAVRLFASGE*
Ga0126377_115575542	3300010362	Tropical Forest Soil	GFRLAVDVLYTRVETAFDGQQVSLSKTQGLRPTGLYTAKDQGILAVTFRAQRTFAAGN*
Ga0126377_120641871	3300010362	Tropical Forest Soil	DPGFNFWTVGMVNNWYPVAGFRLAVDVLYTRVETGFDGQQITLTKTQGARPTGAYTAKDDGILSVTFRAQRSFATSE*
Ga0126377_126316901	3300010362	Tropical Forest Soil	VDVIYTRIETAFDGQQVSLSKTQGLRPTGLYTAKDQGILAVTFRAQRSFVTE*
Ga0126377_134379811	3300010362	Tropical Forest Soil	EVDYTRIETAFDGQTVSLSKTQGLRPTGTYTAKDQGIISVIFRAQRTFASGE*
Ga0126379_115764671	3300010366	Tropical Forest Soil	DPGFNFWSVGAVTNWYPVAGFRLAVDVLWTQVQTAFSGDTITLAKTQGARPTGAYTAKDLGILSVTFRAQRSFATSE*
Ga0126379_118541351	3300010366	Tropical Forest Soil	LFMVGMVNNWFPVAGFRLAVDVLYTRVQTAADGQTISLNKAQGARPTGLYTAKDQGIISVYFRAQRAFVTGE*
Ga0126379_120626802	3300010366	Tropical Forest Soil	RLAVDVLYTRIESAFDGQTISLSKTQGLRPTGSYLAKDQGILAVTFRAQRSFVTE*
Ga0126379_130941192	3300010366	Tropical Forest Soil	APGFRLAVEVDYTRVETAFDGQTISLSKTQGLRPTGNYTAKDLGALSVIFRAQRSFAAGE
Ga0126383_130952761	3300010398	Tropical Forest Soil	NWYPVAGFRLAVDVLYTRVETGFDGQQITLTKTQGARPTGAYTAKDDGILSVTFRAQRSFATSE*
Ga0134123_100568581	3300010403	Terrestrial Soil	TNWYPVAGLRLAVDVIYVRTETAFDGQTISLAKTQGLRPTGVYTAKDEGILAVTFRIQRSFATGE*
Ga0134123_108895522	3300010403	Terrestrial Soil	VTSWYPVAGFRLAVDVQYTRIETAMDGQTLSLSKTQGLRPTGVYTAKDQGILAVVFRAQRSFATGD*
Ga0137382_107626022	3300012200	Vadose Zone Soil	WFPAPGSRLAIDVIYSRVQTAFDGQTVSLAKSAGLRPTGTYTAKDQGIASVMFRAYRSFVTE*
Ga0137374_106228232	3300012204	Vadose Zone Soil	GFRLAVDVLYTHIDSAFDGATVTISKAQGLRPTGAYSAKDQGIVSVVFRAQRSFATGD*
Ga0137362_104391352	3300012205	Vadose Zone Soil	VDVLYTRVESAFDGQTVSLSKAQGLRPSGSYTAKDQGILAVTFRAQRSFATTD*
Ga0137379_103663811	3300012209	Vadose Zone Soil	RLAVEVLYSRAQTAFDGQTVSLSKSAGLRPTGTYTAKDQGILSVGFRAQRAFATGE*
Ga0137387_101061481	3300012349	Vadose Zone Soil	LAVDVLYTRIESAFDGETVSLSKTQGLRPSGSYTAKDQGILSVVFRAQRSFATGE*
Ga0137387_107873132	3300012349	Vadose Zone Soil	NKWYPVAGFRLAVDVLYSRVQTAFDGQTVSLSKAAGLRPTGLYTAKDQGIVSVMFRAQRAFVTE*
Ga0137386_100221881	3300012351	Vadose Zone Soil	VTNWYPVAGFRLAVDVLYTRVESAFDGQSVSLSKTTGLRPTGSYTAKDQGILAVTFRAQRAFATGD*
Ga0137375_100305361	3300012360	Vadose Zone Soil	VDVLYTHIDTAFDGATVTVSKAQGLRPTGAYSAKDQGIVSVVFRAQRSFATGD*
Ga0137375_104179711	3300012360	Vadose Zone Soil	GFRLAVDVQYTRIETAFDGQTVSLSKTQGLRPSGSYTAKDQGILSVVFRAQRSFATSE*
Ga0137360_115725101	3300012361	Vadose Zone Soil	GFRLAVDVLYSRVETAFEGQTIAVAKTQGGLRPTGSYTAKDQGILSVVFRAQRSFATSE*
Ga0137361_111309811	3300012362	Vadose Zone Soil	PVAGFRLAVDVLYTRIETAFEGQTVTLSKTIGLRPTGTYTAKDQGILSVVFRAQRSFATSE*
Ga0150984_1052741891	3300012469	Avena Fatua Rhizosphere	VAGFRLAVDVQYTRIETAFEGQTVTLSKAQGLRPSGIYTAKDQGILSVVFRAQRAFATGD
Ga0137419_108545551	3300012925	Vadose Zone Soil	WTVGAVTNWYPVAGFRLAVDVQYTRIETAFDGQSVSLSKTQGLRPTGSYTAKDQGILSVVFRAQRSFATSE*
Ga0137419_110293141	3300012925	Vadose Zone Soil	NWYPVAGFRLAVDVIYTRVETAFDGQSVTLGKTTGLRPTGSYTAKDQGILAVTFRAQRSFATGE*
Ga0137416_120339511	3300012927	Vadose Zone Soil	VGLIQNWFPAPGFRLALEVDFVRVETAFEGQAVTLSKTVGLRPTGTYTAKDQGILSVVFRAQRSFATSE*
Ga0137416_120989992	3300012927	Vadose Zone Soil	VLYSRVQTAFDGQSVSLSKSAGLRPTGTYTAKDQGIASVMFRAYRSFVTE*
Ga0137404_112324062	3300012929	Vadose Zone Soil	FRLAVDVQYTRIETAFEGQTVTLSKTQGLRPTGTYTAKDQGILAVTFRAQRSFVTE*
Ga0137407_123533432	3300012930	Vadose Zone Soil	DWYPVPGFRLAVEVLYTRIETAFDGQTVTLAKAQGLRPTGNYSAKDQGILSVGFRAVRAFATGGE*
Ga0137407_123759481	3300012930	Vadose Zone Soil	VGAVTNWYPVAGFRLAVDVLYTRVESAFDGQVVSLSKTTGLRPTGNYTAKDQGILAVTFRAQRSFATTD*
Ga0126375_100102917	3300012948	Tropical Forest Soil	LVPLAGFRLAVDVLYTRVETAFDAQQVTLTKTQGARPTGAYTANDQGIVSVVFRAQRSFATGN*
Ga0126375_104984262	3300012948	Tropical Forest Soil	LYTRVETGFDGQTLTLNKTQGARPTGSYTAKDDGILSVVFRAQRAFATGE*
Ga0126375_112024351	3300012948	Tropical Forest Soil	TTYTRVETAFEGQALTLTKTTGARPTGVYTGTDQGILSVIFRAQRAFASGE*
Ga0126375_117101101	3300012948	Tropical Forest Soil	NFWQVGMVNSWYPVAGFRLAVDVLLTRVETAFDGQTISLGKAQGARPTGLYTARDQDILSVTFRAQRSFVTE*
Ga0164300_104199272	3300012951	Soil	HTDWFPVRGFRLGVDVLWTQVETAYEGQTLVLSTSQGARPTGLYTAKNTGILAIAARAQRSFPAGGE*
Ga0126369_110060604	3300012971	Tropical Forest Soil	GVDVQYTRVETAFDGQTVSLSKAQGLRPTGLYTAKDQGILAVTFRAQRAFVTE*
Ga0126369_111065532	3300012971	Tropical Forest Soil	DVLYTRVETAFEGQTVTLSKAQGLRPTGTYTAKDQGILAVTFRAQRSFATTE*
Ga0126369_112635062	3300012971	Tropical Forest Soil	AVTNWYPVAGFRLAVDVQYTRIETAMDGQTISLSKTQGLRPSGVYTAKDQGILAAVFRAQRAFASSD*
Ga0126369_122253902	3300012971	Tropical Forest Soil	NYWTVGSVTNWYPVAGLRLAVDVLYTLIETAFDGQSVSLSKMQGLRPTGLYTTKDQGILSFTFRAQRSFVTE*
Ga0164307_101859022	3300012987	Soil	GFRLAVDVQYTRIETAMDGQTISLSKTQGLRPTGLYTAKDQGILAVVFRAQRSFATAD*
Ga0157376_107956362	3300014969	Miscanthus Rhizosphere	WYPVPDFRLAVEVLYTRIETAFDGQTVALGKTQGLRPTGLYTAKDQGILSVGFRAVRSFASGN*
Ga0157376_109561622	3300014969	Miscanthus Rhizosphere	GLRLALEVDYTRVETAFDGQTVSLSKTQGLRPTGLYTAKDQGIISVMFRAQRSFAAGE*
Ga0137411_13207516	3300015052	Vadose Zone Soil	VLYTRIETAFDGQAVKLSKTVGLRPTGVYTAKDQGSGPLVFRAQRSFASGE*
Ga0132256_1027412692	3300015372	Arabidopsis Rhizosphere	PVAGFRLAVDVLYSRVETAFDGQQVTLSKAQGARPTGVYTAKDQGILAVVFRAQRSFATGN*
Ga0132256_1034297701	3300015372	Arabidopsis Rhizosphere	THTDWYPVPGFRLAVEVLYTRIETAFDGQTVTLSKAQGLRPTGLYTAKDQGIISVGFRAVRSFATGGE*
Ga0132256_1036395551	3300015372	Arabidopsis Rhizosphere	WYPVAGFRLAVDVLYTRVESAFDGQTVSLSKTQGLRPTGLYTAKDQGIISVMFRAQRSFAAGE*
Ga0132257_1040128992	3300015373	Arabidopsis Rhizosphere	WYPVAGFRLAVDVQYTRIETAMDGQTISLSKTQGLRPTGLYTAKDQGILAVVFRAQRSFATGD*
Ga0132255_1013500952	3300015374	Arabidopsis Rhizosphere	FWIVGMIHNWFPVPGFRLALEVDYIRVETAFDGQLISLGKTQGLRPTGIYTAKDQGIISVMFRAQRAFASGE*
Ga0184609_100695192	3300018076	Groundwater Sediment	GFRLAVDVQYTRIESAFDGQTISLSKTTGLRPTGSYTAKDQGILAVVFRAQRSFATAE
Ga0184625_101636481	3300018081	Groundwater Sediment	VGSHTDWYPVAGFRLAVDVAYTRIETAFDGQAVTLTKTQGARPTGVYIAKDEGILAVVFRAQRSFATGE
Ga0190265_117745251	3300018422	Soil	PGLRFAVDVLYTHVDSGFEGQTVTINRTNARPAGAYVVKDQGIVSVMVRGQRSW
Ga0193712_11230091	3300019880	Soil	VDVQYTRIETAFDGETVTLSKTTGLRPTGTYTAKDQGILAVVFRAQRSFATGE
Ga0193727_10649662	3300019886	Soil	VDVLYTRIETAFDGQAVTLSKTVGLRPTGVYTAKDQGIVSVVFRAQRSFASGE
Ga0207693_112759931	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	YPVAGFRLAVDVLYARVETAFDGQTVSLSKTQGARPTGTYTAKDQGTLSVIFRAQRNFATGN
Ga0207694_110727271	3300025924	Corn Rhizosphere	NYWSVGSVTNWYPVAGLRLAVDVIYVRTETAFDGQTISLAKTQGLRPTGVYTAKDEGILAVTFRIQRSFATGE
Ga0207711_118171322	3300025941	Switchgrass Rhizosphere	LRLALEVDYTRVETAFDGQTVSLSKTQGLRPTGLYTAKDQGILSVGFRAVRSFASGN
Ga0209074_103498461	3300027787	Agricultural Soil	WYPVAGFRLAVDVQYTRIETAFEGQTISLGKTQGLRPTGLYTAKDQGILAVTFRAQRAFVTE
Ga0209590_108757992	3300027882	Vadose Zone Soil	RLAVDVAYSRVQTAFDGQTVSLSKTAGLRPTGNYTAKDQGILSVGFRAQRAFASGE
Ga0209488_109191412	3300027903	Vadose Zone Soil	DWYPVAGFRLAVDVLYARVETAFDGQTVSLSKTTGLRPTGSYTAKDQGILAVTFRAQRSFATSE
Ga0209382_104059631	3300027909	Populus Rhizosphere	WQVGMVNNWYPVAGFRLAVDVQYTRIETAFEGQTLSLSKTQGLRPTGSYLAKDQGILAVTFRAQRSFVTE
Ga0268264_117547832	3300028381	Switchgrass Rhizosphere	DYTRVETAFDGQTVSLSKTQGLRPTGLYTAKDQGIISVMFRAQRSFAAGE
Ga0308181_11582842	3300031099	Soil	GTHTDWYPVPGFRLAVEVLYTRIETAFDGQTVTLAKAQGLRPTGSYTAKDQGILSVGFRAVRSFATGGE
Ga0307501_100479841	3300031152	Soil	WYPVAGFRLAVDVLYSRIETAFEGQPVTLSKTVGLRPTGTYTAKDQGILSVVFRAQRSFATSE
Ga0307499_102027102	3300031184	Soil	VAGFRLAVDVLYTRIETAFDGQAVSLSKTVGLRPTGSYTAKDQGILSVVFRAQRSFATGE
Ga0307499_102803981	3300031184	Soil	GFRLAVDVQYTRIETAFEGQTISLNKTQGLRPTGSYLAKDQGILAVTFRAQRSFVTE
Ga0307500_100066783	3300031198	Soil	TLGAVTNWYPVAGFRLAVDVQYTRIETAFDGETVTLSKTTGLRPTGTYTAKDQGILAVVFRAQRSFATGE
Ga0307500_100553952	3300031198	Soil	RLALEVDYIRVETAFDGQQISLNKTQGLRPTGLYTAKDQGIISVMFRAQRSFAAGE
Ga0307497_101139512	3300031226	Soil	SDWYPVPGFRLAVEVLYSRIETAFDGQTVTLNKTQGLRPTGAYTAKDQGILSVGFRAVRSFASGE
Ga0307497_107152672	3300031226	Soil	VLYTRIESAFAGETVSLAKAQGLRPTGLYTAKDQGIISVGFRAVRSFATGN
Ga0308194_101667491	3300031421	Soil	GRTDWYPVPSFRLGVEVMYTQIDTALEGQQITLASTQGRRPTGIYTAKDQGITSVIFRAQRQWAAGEAGR
Ga0308194_103848672	3300031421	Soil	VNYTRVGTAFEGQTVTLGKTQGLRPTGNYTAKDQGIVAVGFRAVRSFGTAGE
Ga0307468_1015313861	3300031740	Hardwood Forest Soil	TLGTHSDWYPVPGFRLAVDVLYTRIETAFEGEQITLTKTQGARPTGLYTAKDQGIVSVVFRAQRSFGAAE
Ga0307470_107368783	3300032174	Hardwood Forest Soil	CDPGYNYWTVGAVTNWYPVAGFRLAVDVIYVRVESAFDGQTVSLSKTQGLRPTGLYTAKDQGILAVTFRAQRSFVTE
Ga0307471_1013700233	3300032180	Hardwood Forest Soil	TVGTHTDWYPVAGFRLAVDVLYTRIETAFEGEQITLTKTQGARPTGLYTARDQGIVSVIFRAQRAFGTAD
Ga0307471_1028949372	3300032180	Hardwood Forest Soil	RLAVEVLYTRIETAFDGQTVLLSKTQGLRPTGSYLAKDQGIISVGFRAVRSFATGGE
Ga0326723_0527939_2_232	3300034090	Peat Soil	PGFNFWTVGTHTDWYPVSGFRLAVDVQYVRIETAFEGQTISLNKAQGARPTGLYTARDQGILAVVFRAQRSFATGN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F038304

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences