Metagenome / Metatranscriptome Family F038139

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F038139
Family Type	Metagenome / Metatranscriptome
Number of Sequences	166
Average Sequence Length	55 residues
Representative Sequence	MEPRKDEKTDRFQIVKLEERIAPSNANFPPGQFPSGNPAQAPGNSNPNENGGPK
Number of Associated Samples	72
Number of Associated Scaffolds	166

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	83.95 %
% of genes near scaffold ends (potentially truncated)	18.07 %
% of genes from short scaffolds (< 2000 bps)	95.18 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (62.651 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Sand → Desert → Soil (20.482 % of family members)
Environment Ontology (ENVO)	Unclassified (36.145 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.554 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 166 Family Scaffolds
PF13759	2OG-FeII_Oxy_5	1.81
PF01925	TauE	0.60
PF02633	Creatininase	0.60
PF05402	PqqD	0.60
PF13532	2OG-FeII_Oxy_2	0.60
PF03129	HGTP_anticodon	0.60
PF13533	Biotin_lipoyl_2	0.60
PF13358	DDE_3	0.60

COG ID	Name	Functional Category	% Frequency in 166 Family Scaffolds
COG0124	Histidyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.60
COG0423	Glycyl-tRNA synthetase, class II	Translation, ribosomal structure and biogenesis [J]	0.60
COG0441	Threonyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.60
COG0442	Prolyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.60
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.60
COG1402	Creatinine amidohydrolase/Fe(II)-dependent FAPy formamide hydrolase (riboflavin and F420 biosynthesis)	Coenzyme transport and metabolism [H]	0.60

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.65 %
All Organisms	root	All Organisms	37.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.65 %
cellular organisms	root	All Organisms → cellular organisms	37.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.65 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	25.90 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	11.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.65 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	25.90 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	4.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.20 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.65 %
Chlorophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta	25.90 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	3.61 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.20 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.60 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.60 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.65 %
core chlorophytes	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes	25.90 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1.81 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	1.20 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	1.20 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.60 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.60 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.65 %
Chlorophyceae	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae	25.90 %
unclassified Phycisphaerae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae	1.20 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.20 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	1.20 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.60 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.65 %
CS clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade	25.90 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1.20 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	1.20 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.20 %
Methylocaldum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	0.60 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.65 %
Sphaeropleales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales	25.90 %
Limnoglobus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Limnoglobus	1.20 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1.20 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.20 %
Methylocaldum szegediense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum → Methylocaldum szegediense	0.60 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.65 %
Selenastraceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae	25.90 %
Limnoglobus roseus	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Limnoglobus → Limnoglobus roseus	1.20 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1.20 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.20 %
Methylocaldum szegediense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum → Methylocaldum szegediense	0.60 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.65 %
Monoraphidium	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium	25.90 %
Limnoglobus roseus	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Limnoglobus → Limnoglobus roseus	1.20 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1.20 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.20 %
Methylocaldum szegediense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum → Methylocaldum szegediense	0.60 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.65 %
Monoraphidium neglectum	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	25.90 %
Limnoglobus roseus	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Limnoglobus → Limnoglobus roseus	1.20 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1.20 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.20 %
Methylocaldum szegediense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum → Methylocaldum szegediense	0.60 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.60 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459017\|G14TP7Y01CFW7J	Not Available	666	Open in IMG/M
3300000750\|JGI12272J11983_1017803	Not Available	551	Open in IMG/M
3300000750\|JGI12272J11983_1025227	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	817	Open in IMG/M
3300000750\|JGI12272J11983_1039838	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	959	Open in IMG/M
3300000750\|JGI12272J11983_1051046	Not Available	792	Open in IMG/M
3300000750\|JGI12272J11983_1053315	Not Available	660	Open in IMG/M
3300000750\|JGI12272J11983_1069810	Not Available	573	Open in IMG/M
3300000750\|JGI12272J11983_1088898	Not Available	827	Open in IMG/M
3300000750\|JGI12272J11983_1114131	Not Available	615	Open in IMG/M
3300000750\|JGI12272J11983_1116528	Not Available	660	Open in IMG/M
3300000750\|JGI12272J11983_1123641	Not Available	601	Open in IMG/M
3300000750\|JGI12272J11983_1148556	Not Available	781	Open in IMG/M
3300000828\|JGI12467J12023_1026816	Not Available	839	Open in IMG/M
3300000828\|JGI12467J12023_1066255	Not Available	934	Open in IMG/M
3300000828\|JGI12467J12023_1098336	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	851	Open in IMG/M
3300000828\|JGI12467J12023_1142927	Not Available	944	Open in IMG/M
3300000829\|JGI12397J12024_1156222	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	852	Open in IMG/M
3300000831\|JGI12271J12027_1063788	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	526	Open in IMG/M
3300000831\|JGI12271J12027_1071932	Not Available	503	Open in IMG/M
3300000831\|JGI12271J12027_1117378	Not Available	531	Open in IMG/M
3300000831\|JGI12271J12027_1121130	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	565	Open in IMG/M
3300000831\|JGI12271J12027_1121329	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	674	Open in IMG/M
3300000833\|JGI12273J12029_10128936	Not Available	686	Open in IMG/M
3300000833\|JGI12273J12029_10530148	Not Available	535	Open in IMG/M
3300000955\|JGI1027J12803_107982509	Not Available	1403	Open in IMG/M
3300000956\|JGI10216J12902_111471277	Not Available	780	Open in IMG/M
3300003724\|Ga0004769_103457	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	505	Open in IMG/M
3300005332\|Ga0066388_101016229	Not Available	1391	Open in IMG/M
3300005333\|Ga0070677_10255160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	872	Open in IMG/M
3300005340\|Ga0070689_100220621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum → Methylocaldum szegediense	1555	Open in IMG/M
3300005347\|Ga0070668_101738960	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	573	Open in IMG/M
3300005355\|Ga0070671_100995427	Not Available	734	Open in IMG/M
3300005441\|Ga0070700_101579251	Not Available	560	Open in IMG/M
3300005506\|Ga0068912_10008770	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	980	Open in IMG/M
3300005506\|Ga0068912_11123671	Not Available	592	Open in IMG/M
3300005506\|Ga0068912_11187215	Not Available	532	Open in IMG/M
3300005506\|Ga0068912_11203877	Not Available	506	Open in IMG/M
3300005506\|Ga0068912_11210834	Not Available	736	Open in IMG/M
3300005506\|Ga0068912_11214036	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	656	Open in IMG/M
3300005506\|Ga0068912_11266734	Not Available	538	Open in IMG/M
3300005506\|Ga0068912_11276357	Not Available	1062	Open in IMG/M
3300005764\|Ga0066903_105128210	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	694	Open in IMG/M
3300005764\|Ga0066903_106773418	Not Available	596	Open in IMG/M
3300006051\|Ga0075364_11217402	Not Available	510	Open in IMG/M
3300006844\|Ga0075428_100041197	All Organisms → cellular organisms → Bacteria	5080	Open in IMG/M
3300006876\|Ga0079217_10175021	Not Available	1069	Open in IMG/M
3300006894\|Ga0079215_11557094	Not Available	524	Open in IMG/M
3300007004\|Ga0079218_10392961	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1177	Open in IMG/M
3300007004\|Ga0079218_10728375	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	937	Open in IMG/M
3300009094\|Ga0111539_12156770	Not Available	646	Open in IMG/M
3300009147\|Ga0114129_12802932	Not Available	579	Open in IMG/M
3300009147\|Ga0114129_13263403	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	526	Open in IMG/M
3300009792\|Ga0126374_10169284	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300010047\|Ga0126382_10165198	Not Available	1534	Open in IMG/M
3300010100\|Ga0127440_1033450	Not Available	609	Open in IMG/M
3300010146\|Ga0126320_1304291	Not Available	563	Open in IMG/M
3300010146\|Ga0126320_1305697	Not Available	533	Open in IMG/M
3300010146\|Ga0126320_1311590	Not Available	713	Open in IMG/M
3300010146\|Ga0126320_1409219	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	779	Open in IMG/M
3300010146\|Ga0126320_1428097	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	981	Open in IMG/M
3300010359\|Ga0126376_10036229	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Limnoglobus → Limnoglobus roseus	3387	Open in IMG/M
3300010361\|Ga0126378_12363117	Not Available	607	Open in IMG/M
3300010366\|Ga0126379_13392376	Not Available	533	Open in IMG/M
3300011332\|Ga0126317_10010111	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	594	Open in IMG/M
3300011332\|Ga0126317_10078172	Not Available	584	Open in IMG/M
3300011333\|Ga0127502_10239300	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300011333\|Ga0127502_10893314	Not Available	519	Open in IMG/M
3300011333\|Ga0127502_11219455	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300012209\|Ga0137379_10553499	Not Available	1058	Open in IMG/M
3300012212\|Ga0150985_100838490	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	570	Open in IMG/M
3300012212\|Ga0150985_101249593	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	668	Open in IMG/M
3300012212\|Ga0150985_103027790	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	748	Open in IMG/M
3300012212\|Ga0150985_103069642	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	545	Open in IMG/M
3300012212\|Ga0150985_103450562	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	534	Open in IMG/M
3300012212\|Ga0150985_104169085	Not Available	824	Open in IMG/M
3300012212\|Ga0150985_105110526	Not Available	605	Open in IMG/M
3300012212\|Ga0150985_106081405	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	836	Open in IMG/M
3300012212\|Ga0150985_107284175	Not Available	549	Open in IMG/M
3300012212\|Ga0150985_107628676	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	544	Open in IMG/M
3300012212\|Ga0150985_109149044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300012212\|Ga0150985_109205390	Not Available	742	Open in IMG/M
3300012212\|Ga0150985_109278675	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	686	Open in IMG/M
3300012212\|Ga0150985_109560424	Not Available	515	Open in IMG/M
3300012212\|Ga0150985_110536924	Not Available	613	Open in IMG/M
3300012212\|Ga0150985_111179220	Not Available	703	Open in IMG/M
3300012212\|Ga0150985_113876303	Not Available	839	Open in IMG/M
3300012212\|Ga0150985_115380873	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	803	Open in IMG/M
3300012212\|Ga0150985_115872686	Not Available	591	Open in IMG/M
3300012212\|Ga0150985_116312468	Not Available	1265	Open in IMG/M
3300012212\|Ga0150985_116427241	Not Available	526	Open in IMG/M
3300012212\|Ga0150985_116907048	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	1674	Open in IMG/M
3300012212\|Ga0150985_117975791	Not Available	593	Open in IMG/M
3300012212\|Ga0150985_118641788	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300012212\|Ga0150985_118856204	Not Available	1176	Open in IMG/M
3300012212\|Ga0150985_119645610	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	875	Open in IMG/M
3300012212\|Ga0150985_120168709	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	681	Open in IMG/M
3300012212\|Ga0150985_122925355	Not Available	703	Open in IMG/M
3300012212\|Ga0150985_123167462	Not Available	631	Open in IMG/M
3300012356\|Ga0137371_10338604	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	1170	Open in IMG/M
3300012469\|Ga0150984_103557009	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	803	Open in IMG/M
3300012469\|Ga0150984_103912434	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	685	Open in IMG/M
3300012469\|Ga0150984_109660028	Not Available	569	Open in IMG/M
3300012469\|Ga0150984_110633024	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	1182	Open in IMG/M
3300012469\|Ga0150984_113337924	Not Available	742	Open in IMG/M
3300012469\|Ga0150984_113509860	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	709	Open in IMG/M
3300012469\|Ga0150984_115871470	Not Available	557	Open in IMG/M
3300012469\|Ga0150984_118032149	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300012469\|Ga0150984_118677289	Not Available	738	Open in IMG/M
3300012469\|Ga0150984_119808046	Not Available	705	Open in IMG/M
3300012469\|Ga0150984_119904006	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	609	Open in IMG/M
3300012469\|Ga0150984_123288564	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	795	Open in IMG/M
3300012948\|Ga0126375_11497241	Not Available	577	Open in IMG/M
3300013105\|Ga0157369_12601661	Not Available	511	Open in IMG/M
3300014497\|Ga0182008_10651003	Not Available	597	Open in IMG/M
3300015372\|Ga0132256_102647502	Not Available	602	Open in IMG/M
3300016294\|Ga0182041_11036154	Not Available	743	Open in IMG/M
3300019142\|Ga0193597_1039161	Not Available	1603	Open in IMG/M
3300019259\|Ga0184646_1155195	Not Available	601	Open in IMG/M
3300020078\|Ga0206352_10774209	Not Available	680	Open in IMG/M
3300025960\|Ga0207651_10023147	All Organisms → cellular organisms → Bacteria	3814	Open in IMG/M
3300027637\|Ga0209818_1232396	Not Available	550	Open in IMG/M
3300027907\|Ga0207428_10594237	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	798	Open in IMG/M
3300028379\|Ga0268266_12108825	Not Available	536	Open in IMG/M
3300030785\|Ga0102757_11076974	Not Available	583	Open in IMG/M
3300030902\|Ga0308202_1089580	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	622	Open in IMG/M
3300030902\|Ga0308202_1118678	Not Available	563	Open in IMG/M
3300030903\|Ga0308206_1118092	Not Available	611	Open in IMG/M
3300030905\|Ga0308200_1044601	Not Available	810	Open in IMG/M
3300030905\|Ga0308200_1048560	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300030905\|Ga0308200_1053152	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	763	Open in IMG/M
3300030905\|Ga0308200_1108330	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	600	Open in IMG/M
3300030905\|Ga0308200_1109389	Not Available	598	Open in IMG/M
3300030905\|Ga0308200_1118638	Not Available	582	Open in IMG/M
3300030988\|Ga0308183_1073843	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	732	Open in IMG/M
3300031058\|Ga0308189_10088696	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	955	Open in IMG/M
3300031058\|Ga0308189_10165201	Not Available	773	Open in IMG/M
3300031058\|Ga0308189_10241230	Not Available	677	Open in IMG/M
3300031058\|Ga0308189_10361464	Not Available	588	Open in IMG/M
3300031058\|Ga0308189_10501399	Not Available	523	Open in IMG/M
3300031058\|Ga0308189_10514733	Not Available	517	Open in IMG/M
3300031091\|Ga0308201_10155713	Not Available	720	Open in IMG/M
3300031091\|Ga0308201_10313460	Not Available	563	Open in IMG/M
3300031092\|Ga0308204_10172467	Not Available	657	Open in IMG/M
3300031092\|Ga0308204_10235987	Not Available	586	Open in IMG/M
3300031093\|Ga0308197_10371567	Not Available	551	Open in IMG/M
3300031094\|Ga0308199_1120750	Not Available	597	Open in IMG/M
3300031114\|Ga0308187_10147437	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	781	Open in IMG/M
3300031114\|Ga0308187_10285861	Not Available	613	Open in IMG/M
3300031123\|Ga0308195_1090163	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	501	Open in IMG/M
3300031421\|Ga0308194_10036808	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1186	Open in IMG/M
3300031548\|Ga0307408_101308188	Not Available	680	Open in IMG/M
3300031824\|Ga0307413_10507368	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	970	Open in IMG/M
3300031852\|Ga0307410_10964402	Not Available	734	Open in IMG/M
3300031901\|Ga0307406_11558990	Not Available	583	Open in IMG/M
3300031911\|Ga0307412_11910042	Not Available	548	Open in IMG/M
3300031938\|Ga0308175_100098751	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2683	Open in IMG/M
3300031938\|Ga0308175_100989842	Not Available	929	Open in IMG/M
3300031938\|Ga0308175_101078045	Not Available	890	Open in IMG/M
3300031939\|Ga0308174_10423998	Not Available	1076	Open in IMG/M
3300031995\|Ga0307409_101120503	Not Available	809	Open in IMG/M
3300032005\|Ga0307411_11154026	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum	701	Open in IMG/M
3300034659\|Ga0314780_051050	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Limnoglobus → Limnoglobus roseus	828	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	60.84%
Host-Associated	Host-Associated	38.55%
Engineered	Engineered	0.60%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.61%
Plants	Host-Associated → Plants	38.55%
Aquatic	Environmental → Aquatic	7.23%
Solid Waste	Engineered → Solid Waste	0.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.07%
Freshwater	Environmental → Aquatic → Freshwater	7.23%
Roots	Host-Associated → Plants → Roots	0.60%
Grass	Engineered → Solid Waste → Grass	0.60%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.12%
Sand	Environmental → Terrestrial → Soil → Sand	20.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	18.07%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.43%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	6.63%
Loam	Environmental → Terrestrial → Soil → Loam	3.01%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.60%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.60%
Composting	Engineered → Solid Waste → Grass → Composting	0.60%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.69%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	20.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	18.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.43%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	6.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.01%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.01%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.20%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.20%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.20%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.60%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.60%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	20.48%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	18.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.66%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	7.83%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	6.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.22%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.01%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.01%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.20%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.60%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.60%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.60%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.60%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.60%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.60%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.60%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459017	Litter degradation ZMR4	Engineered	Open in IMG/M
3300000750	Soil microbial communities from Moab, Utah, sample - Soil Crust Dry out, 3 days (biological replicate A) D5A (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300000828	Soil microbial communities from Moab, Utah, sample - Soil Crust Dry out, 3 days (biological replicate C) D5C (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300000829	Soil microbial communities from Moab, Utah, sample - Soil Crust Prior wet up (biological replicate A) 0A (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300000831	Soil microbial communities from Moab, Utah, sample - Soil Crust Dry out, 3 days (biological replicate B) D5B (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300000833	Soil microbial communities from Moab, Utah, sample - Soil Crust Prior wet up (biological replicate C) 0C (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003724	Soil microbial communities from Colorado Plateau and Sonoran desert - Soil Crust after wet up 2B (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005506	Soil microbial communities from Colorado Plateau, USA - Soil Crust after dry out 3A (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010100	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300019142	Soil crust microbial communities from Colorado Plateau, Utah, USA - mid late stage, 3 min after wetting v1	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300030785	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 5C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031123	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300034659	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4ZMR_00882540	2170459017	Switchgrass, Maize And Mischanthus Litter	MQKQQQPQPQPQRFRIQKLERRIAPSSANFPPGQFPSGNPAQAPGNSNPNENGGPK
JGI12272J11983_10178032	3300000750	Soil	MQDQKKTAPKTSRFNVVKLEQRIAPSAANFPPGQFPSGNPAQAPGNSNPNEQGGPKK*
JGI12272J11983_10252271	3300000750	Soil	METRKDEKPSKFRIEKLEERIAPSAANFPPGQFPSGNPAKAPGNSNPNEQGGQK*
JGI12272J11983_10398381	3300000750	Soil	MEARNEEKKSKFRIEKLEERIAPSSANFPPGQFPSGNPAQAPGNSNPNENGGKK*
JGI12272J11983_10510462	3300000750	Soil	MNEQTQKTASEKSSRFNVVKLEERIAPSAANFPPGQFPSGNPAQAPGQSNPNEIGGSKK*
JGI12272J11983_10533152	3300000750	Soil	MQDPKKTAEKQSRFSVVKLEQRIAPSAANFPPGQFPSGNPAQAPGNSNPNEQGGPKK*
JGI12272J11983_10698102	3300000750	Soil	MDQKKSRFDIVKLEERIAPSAANFPPGQFPSGNPAKAPGNSNPNENGGKK*
JGI12272J11983_10888981	3300000750	Soil	MENRNEEKKSKFRIEKLEERIAPSSANFPPGRFPSGNPAQAPGNSNPNENGGKK*
JGI12272J11983_11141311	3300000750	Soil	MEIRKDEKKAKFQVVKLEERIAPSSANFPPGQFPSGNPAQAPGNSNPVQTGPNK*
JGI12272J11983_11165282	3300000750	Soil	MEPRKDEKKSKFRIEKLEERIAPSAANFPPGQFPSGNPAKAPGNSNPNEIGGPKS*
JGI12272J11983_11236412	3300000750	Soil	MAEQKKDNGRFAIVKLEERIAPSAANFPPGQFPSGNPAQAPGNSNPNEIGGSKK*
JGI12272J11983_11485564	3300000750	Soil	MQEQKQDTQKKSRFNIDKLEARIAPSASNFPPGQFPSGNPAQAPGNSNPNEMGGPKK*
JGI12467J12023_10268162	3300000828	Soil	MNEKNQPKNASEKKSRFNVVKLEERIAPSAANFPPGQFPSGNPAKAPGNSNPNEQGGPK*
JGI12467J12023_10662551	3300000828	Soil	EKKSRFSVTKLEARIAPSANNFPPGQNPSGNPAQAPGNSNPNEKGGPK*
JGI12467J12023_10983361	3300000828	Soil	NEEKKSKFRIEKLEERIAPSSANFPPGQFPSGNPAQAPGNSNPNENGGKK*
JGI12467J12023_11429274	3300000828	Soil	MQEQKQDTQKKNRFNIDKLEARIAPSASNFPPGQFPSGNPAQAPGNSNPNEMGGPKK*
JGI12397J12024_11562221	3300000829	Soil	RDEEKKSKFRIEKLEERIAPSSANFPPGQFPSGNPAQAPGNSNPNENGGKK*
JGI12271J12027_10637882	3300000831	Soil	MAEQKKDGGRFTIVKLEERLAPSAANFPPGQFPSGNPAQAPGSSNPNEMGGSKK*
JGI12271J12027_10719322	3300000831	Soil	MSEQKKVSGRFTVVKLEERIAPSAANFPPGQFPSGNPAQAPGNSNPNEIGGSKK*
JGI12271J12027_11173782	3300000831	Soil	MKNEKNSSPKQPKFQVVKLEERIAPSSSKFPPGQFPSGNPAQAPGNSNPNENGGPK*
JGI12271J12027_11211302	3300000831	Soil	MAEQKKDGARFTIVKLEERIAPSASNFPPGQFPSGNPAQAPGSSNPNEMGGSKK*
JGI12271J12027_11213293	3300000831	Soil	MAEQKKNGGRFTIVKLEERLAPSAANFPPGQFPSGNPAQAPGNSNPNEIGGSKK*
JGI12273J12029_101289361	3300000833	Soil	CTLKEVPVEQRQEKKSRFQVIPLEKRIAPSAADFPPGQFPSGNPAKAPGNSNPNENGGSKK*
JGI12273J12029_105301481	3300000833	Soil	RKDEKPSKFRIEKLEERIAPSAANFPPGQFPSGNPAKAPGNSNPNEIGGPKS*
JGI1027J12803_1079825092	3300000955	Soil	MADAKKQPVQKRPFKIDKLEDRIAPSSSNFPPGQFPAGNPAHAPGNSNPNENGGPKK
JGI10216J12902_1114712772	3300000956	Soil	MTQQQQNQPKVPARKFQVAKLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNEIGGSK*
Ga0004769_1034571	3300003724	Soil	MEQRKTEPKQSRFKVEQLERRIAPSAANFPPGQFPSGNPAKAPGNSNPNEMGGPKS*
Ga0066388_1010162292	3300005332	Tropical Forest Soil	MEPRKEAAQDRFRIEQLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKK*
Ga0070677_102551603	3300005333	Miscanthus Rhizosphere	PKTQPKGRFNIQKLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGPK*
Ga0070689_1002206213	3300005340	Switchgrass Rhizosphere	MNETKKTERGTTKQFKIEKLEERLAPSAANFPPGQFPSGNPAKAPGESNPNEIGGSKK*
Ga0070668_1017389602	3300005347	Switchgrass Rhizosphere	METRKDEKPSKFRIERLEERIAPSAANFPPGQFPSGNPAHAPGNSNPNENGGPK*
Ga0070671_1009954271	3300005355	Switchgrass Rhizosphere	MKEQNPKTQPKGRFNIQKLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNEN
Ga0070700_1015792511	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MKEQNPKTQPKGRFNIQKLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGPK*
Ga0068912_100087703	3300005506	Soil	KSKFRIEKLEERIAPSSANFPPGQFPSGNPAQAPGNSNPNENGGKK*
Ga0068912_100303752	3300005506	Soil	MQNSKSQAKPNRFNVVKLESRIAPSAANFPPGQFPSGNPAKAPGQSNPNTAPSGR*
Ga0068912_111236711	3300005506	Soil	MKDVKKPQKPGRFNVVKLEDRIAPSAANFPPGQFPSGNPAQAPGNSNPNEMGGPKK
Ga0068912_111872152	3300005506	Soil	RKDEKTSKFRIEKLEERIAPSAANFPPGQFPSGNPAQAPGNSNPNEQGGQK*
Ga0068912_112038771	3300005506	Soil	MKDDKKPAAPKQGRFSVVKLEDRIAPSAAKFPPGQFPSGNPAQAPGNSNPNE
Ga0068912_112108341	3300005506	Soil	MQDPKKTAEKRSRFSVVKLEQRIAPSAANFPPGQFPSGNPAQAPGNSNPNEQGGPKK*
Ga0068912_112140362	3300005506	Soil	MEARQQSHDQVKPRKFRIDRLEERIAPSAAKFPPGQFPSGNPAQAPGNSNPNENGGPK*
Ga0068912_112667342	3300005506	Soil	METRNEEKKSKFRIEKLEERIAPSSANFPPGRFPSGNPAQAPGNSNPNETGGKK*
Ga0068912_112763573	3300005506	Soil	MQQKKDSQKSSKFQVVKLEERIAPSANKFPPGQNPSGNPAQAPGNSNPNENGGPKS*
Ga0066903_1051282102	3300005764	Tropical Forest Soil	VEKQQESKKRFAIEPLEERIAPSNANFPPGRFPSGNPAHAPGNSNPNENGGPKK*
Ga0066903_1067734181	3300005764	Tropical Forest Soil	MEQDKEKEGRFRIDRLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKG*
Ga0075364_112174021	3300006051	Populus Endosphere	MDPKEEVKGRFQIEDLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPK*
Ga0075428_1000411975	3300006844	Populus Rhizosphere	METRKEEPKGRFEIVKLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKD*
Ga0079217_101750212	3300006876	Agricultural Soil	MADQKNPAAPKRAFKIDKLEDRIAPSNAKFPPGQFPSGNPAHAPGNSNPNENGGPKK*
Ga0079215_115570941	3300006894	Agricultural Soil	MDQQKKQTSTGKFQVRKLEERIAPSSANHPPGQFPAGNPAHAPGNSNPNENGGPKK*
Ga0079218_103929611	3300007004	Agricultural Soil	MGQQEKQQNTGKFQVRKLEERIAPSSANHPPGQFPAGNPAHAPGNSNPNENGGPKK*
Ga0079218_107283753	3300007004	Agricultural Soil	MDTKEERKDRFQIEKLEERIVPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKK*
Ga0111539_121567702	3300009094	Populus Rhizosphere	MKLHNEEKLSRFEIEKLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKD*
Ga0114129_128029321	3300009147	Populus Rhizosphere	MQEQKVQQEERSGFQIEQLEERLAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKD*
Ga0114129_132634031	3300009147	Populus Rhizosphere	MQEQKKDAQPKSRFNIQKLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGPKD*
Ga0126374_101692843	3300009792	Tropical Forest Soil	MERRPEEQKNRFQIEQLEERLAPSNANFPPGRFPSGNPAHAPGNSNPNENGGPKK*
Ga0126382_101651984	3300010047	Tropical Forest Soil	MEPRKEEQKSRFQIEPLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKK*
Ga0127440_10334501	3300010100	Grasslands Soil	KESRFRIEKLEERIAPSAANFPPGQFPSGNPAHAPGNSNPNENGGPKT*
Ga0126320_13042912	3300010146	Soil	MEQRQEKKGRFQIEDLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKK*
Ga0126320_13056971	3300010146	Soil	MEQQTRDQGRFQIVRLEERIAPSNANFPPGQFPAGNPAQAPGNSNPNENGGPK*
Ga0126320_13115902	3300010146	Soil	MEPRTEVQKSRFQIEQLEERLAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPK*
Ga0126320_14092191	3300010146	Soil	MESGKQKESRFRIDPLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKT*
Ga0126320_14280973	3300010146	Soil	VSAERSVESRPETRKSRFQIEKLEERITPSNANFPPGQFPAGNPAHAPGNSNPNENGGPK
Ga0126376_100362295	3300010359	Tropical Forest Soil	MQEQQVQQEKRSRFQIEQLEERIAPSNANFPPGQFPAGNPAHAPGNSNPNENGGPKK*
Ga0126378_123631172	3300010361	Tropical Forest Soil	MEPRKEEAQNRFQIEQLEERLAPSNANFPPGRFPSGNPAHAPGNSNPNENGGPKK*
Ga0126379_133923761	3300010366	Tropical Forest Soil	MQEQQVQQEKNRFQIEQLEERLAPSNANFPPGRFPSGNPAHAPGNSNPNENGGPKK*
Ga0126317_100101112	3300011332	Soil	MEKLTHQKQTRFKITQLEERIAPSAANFPPGQFPSGNPAHAPGDSNPNENGGPKK*
Ga0126317_100781721	3300011332	Soil	MQEQKDTRPKARFNIQKLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGPK*
Ga0127502_102393001	3300011333	Soil	MEQQQEKKDRFAIEKLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKD*
Ga0127502_102434921	3300011333	Soil	VQKQTEQQPKTPSNRFQIVKLEERIAPSAANFPPGQFPSGNPAHAPGNSNPVQTGQG*
Ga0127502_108933142	3300011333	Soil	MQDQKKQAQTTNRFNVRKLEPRIAPSSASFPPGQFPSGNPAHAPGNSNPNENG
Ga0127502_112194551	3300011333	Soil	MQQQTPSPQQDRKFKIEKLEERIAPSSANFPPGQCPSGNPAQAPGNSNTNENGGPK*
Ga0137379_105534992	3300012209	Vadose Zone Soil	MEKSKLRFKIVKLEERIAPSSANFPPGQFPSGNPAKAPGNSNPNTHPK*
Ga0150985_1008384902	3300012212	Avena Fatua Rhizosphere	MKESPVESRNTQKKGRFQIVKLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGKK*
Ga0150985_1012495931	3300012212	Avena Fatua Rhizosphere	METREQKKESRFQIDRLEERIAPSSANFPPGQFPSGNPAQAPGNSNPNENGGPK*
Ga0150985_1030277901	3300012212	Avena Fatua Rhizosphere	MQQQPALKQPQTKRFNVVRLEDRIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGPK*
Ga0150985_1030696421	3300012212	Avena Fatua Rhizosphere	MEEHRTVEDRNEQKKPRFEIEKLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKK*
Ga0150985_1034505622	3300012212	Avena Fatua Rhizosphere	VDSRNEQKAEVKGQRFQIVQLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPK*
Ga0150985_1041690853	3300012212	Avena Fatua Rhizosphere	MENRGQERGETPQGRFRIEKLEERIAPSSAKFPPGQFPSGNPAHAPGNSNPNENGGPKG*
Ga0150985_1051105261	3300012212	Avena Fatua Rhizosphere	VDARETEKKSRFRIEKLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGPKK*
Ga0150985_1060814051	3300012212	Avena Fatua Rhizosphere	MEPRKDEKTDRFQIVKLEERIAPSNANFPPGQFPSGNPAQAPGNSNPNENGGPK*
Ga0150985_1072841751	3300012212	Avena Fatua Rhizosphere	MEPRKEEKPNRFQIEQLEERLAPSNANFPPGQFPAGNPAHAPGNSNPNENGGPKK*
Ga0150985_1076286762	3300012212	Avena Fatua Rhizosphere	METRKVEKTSKFRIERLEERIAPAASSAPGQFPSGPPGTAPGNSNPPGGK*
Ga0150985_1085471363	3300012212	Avena Fatua Rhizosphere	MEAKRDEAPQARQQSRFHIEKLEERIAPSSAKFPPGQFPSGNPAHAPGNSNPNE
Ga0150985_1091490442	3300012212	Avena Fatua Rhizosphere	MEPRQEEPKNRFQIEQLEERLAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKK*
Ga0150985_1092053901	3300012212	Avena Fatua Rhizosphere	MEKTSQAEPRFKVVKLEERIAPSNANFPPGQFPSGNPAKAPGNSNPNENGGPK*
Ga0150985_1092786752	3300012212	Avena Fatua Rhizosphere	MENRNEQKTPRFQIVKLEERVAPSNANFPPGQFPSGNPAQAPGNSNPNENGGKK*
Ga0150985_1095604242	3300012212	Avena Fatua Rhizosphere	VDARKTEKESRFRIEKLEERIAPSAANFPPGQFPSGNPAHAPGNSNPNENGGPKS*
Ga0150985_1105369242	3300012212	Avena Fatua Rhizosphere	MEKTQEKKGRFQIVKLEERIAPSNANFPPGQFPSGNPAHAPGNNNPNENGGPKK*
Ga0150985_1111792201	3300012212	Avena Fatua Rhizosphere	MEQNNQPQAKKSRFSVTKLEARIAPSSNNFPPGQNPSGNPAQAPGNSNPNENGGPK*
Ga0150985_1138763032	3300012212	Avena Fatua Rhizosphere	METRKDEKKGKFRIEKLEERITPSNANFPPGQFPSGNPAQAPGNSNPNEVPSSH*
Ga0150985_1153808733	3300012212	Avena Fatua Rhizosphere	MENRKDEKASKFRIEKLEERIAPSNANFPPGQFPAGNPAHAPGNSNPNENGGPK*
Ga0150985_1158726861	3300012212	Avena Fatua Rhizosphere	RFQIERLEERIAPSSNNFPPGQNPSGNPAQAPGNSNPNENGGPK*
Ga0150985_1163124682	3300012212	Avena Fatua Rhizosphere	MENRTKDEKASKFRIEKLEERIAPSNANFPPGQFPAGNPAHAPGNSNPNENGGPK*
Ga0150985_1164272411	3300012212	Avena Fatua Rhizosphere	METRKDEKPSKFRIEKLEERIAPSAANFPPGQFPSGNPAHAPGESNPNENGGKK*
Ga0150985_1169070482	3300012212	Avena Fatua Rhizosphere	MEPRKEEKPNRFQIEQLEERLAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKK*
Ga0150985_1179757913	3300012212	Avena Fatua Rhizosphere	RFQIDQLEERIAPSNANFPPGQFPSSNPAHAPGNSNLNENGGPKK*
Ga0150985_1186417883	3300012212	Avena Fatua Rhizosphere	VEKQSQEKKGRFQIVQLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGKK*
Ga0150985_1188562041	3300012212	Avena Fatua Rhizosphere	MEQHKEEKRFQIVRLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPK*
Ga0150985_1196456103	3300012212	Avena Fatua Rhizosphere	MTEGEDPVEDRTQARDRFKIEALEERIAPSNANFPPGQFPSGNPAHAPGNSNPNEHPRK*
Ga0150985_1201687091	3300012212	Avena Fatua Rhizosphere	VDDRNEQKTEKKARRFQVVELEERISPSNANFPPGQFPSGNPAHAPGNSNPNENGGPK*
Ga0150985_1229253551	3300012212	Avena Fatua Rhizosphere	MQNKAEQAKTKKPRFEIVKLEARIAPSNASFPPGQFPSGNPAKAPGNSNPNEHGGPK*
Ga0150985_1231674622	3300012212	Avena Fatua Rhizosphere	MHDHAQAVEGKTRFQVVALEEWVAPSSANFPSGQFPAGNPAHAPGNSNPNENGGPKK*
Ga0137371_103386043	3300012356	Vadose Zone Soil	MRMNVKKNDTQPKARFNIQKLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPK*
Ga0150984_1035570091	3300012469	Avena Fatua Rhizosphere	MSEPKKDQREGRFRIVRLEERVAPSAANFPPGQFPAGNPAQAPGNSNPNENGGPK*
Ga0150984_1039124341	3300012469	Avena Fatua Rhizosphere	KTEASPKLSIVKLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGSKK*
Ga0150984_1096600281	3300012469	Avena Fatua Rhizosphere	MSVQQTAEPRKDRFQITQLEERIAPSNANFPPGQFPAGNPAHAPGNSNPNENGGPK*
Ga0150984_1106330241	3300012469	Avena Fatua Rhizosphere	VEQQQEKKGRFQIDQLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKK*
Ga0150984_1133379243	3300012469	Avena Fatua Rhizosphere	VDNVARTPEQKGRFRIVELDERIAPSAANFPPGQFPSGNPAHAPGNSNPNEHGGPKK*
Ga0150984_1135098602	3300012469	Avena Fatua Rhizosphere	VDARKTETESRFRIEKLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGPKK*
Ga0150984_1158714701	3300012469	Avena Fatua Rhizosphere	LVEQQQEKKGRFQIDQLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKS*
Ga0150984_1163841522	3300012469	Avena Fatua Rhizosphere	METRKVEKTSKFRIERLEERIAPATSSAPGQFPSGPPGTAPGNSNPPGGK*
Ga0150984_1180321492	3300012469	Avena Fatua Rhizosphere	MEPRTEVQKSRFQIEQLDERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPK*
Ga0150984_1186772892	3300012469	Avena Fatua Rhizosphere	MEKTQEKKGRFQIVKLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKK*
Ga0150984_1198080462	3300012469	Avena Fatua Rhizosphere	MEPRSEERKGRFQIERLEERIAPSSNNFPPGQNPSGNPAQAPGNSNPNENGGPK*
Ga0150984_1199040061	3300012469	Avena Fatua Rhizosphere	VQKRRFRMEKLEERITPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKK*
Ga0150984_1232885643	3300012469	Avena Fatua Rhizosphere	VTRIRSRQMEPRKDEKTDRFQIVKLEERIAPSNANFPPGQFPSGNPAQAPGNSNPNENGGPK*
Ga0126375_114972411	3300012948	Tropical Forest Soil	LKNRFQIEQLEERLAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKK*
Ga0157369_126016611	3300013105	Corn Rhizosphere	VKQQQPQPKKFEIRPLEPRIAPSSANFPPGQFPAGNPAQAPGNSNPNENGGPK*
Ga0182008_106510031	3300014497	Rhizosphere	MQNKQTQQQQPSRFRIQKLEKRIAPSSANFPPGQFPSGNPAQAPGNSNPNEIGGPK*
Ga0132256_1026475021	3300015372	Arabidopsis Rhizosphere	MEQQVQVPQQDRKFKIDRLEERIAPSAANFPPGQFPSGNPAQAPGNSNPNENGGPK*
Ga0182041_110361542	3300016294	Soil	VEPREEPQKSRFEIEQLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKS
Ga0193597_10391611	3300019142	Soil	METRSEEKKSKFRIEKLEERIAPSSANFPPGRFPSGNPAQAPGNSNPNENGGKK
Ga0184646_11551951	3300019259	Groundwater Sediment	MESPKEDLKGRFEIVKLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKD
Ga0206352_107742092	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	VETRNDEKRTRFRVEKLEERIAPSNANFPPGQFPSGNPAQAPGRSNPNENGGPK
Ga0207651_100231473	3300025960	Switchgrass Rhizosphere	MKEQNQKPQPKGRFNIQKLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGPK
Ga0209818_12323962	3300027637	Agricultural Soil	MADQKNPAAPKRAFKIDKLEDRIAPSNAKFPPGQFPSGNPAHAPGNSNPNENGGPKK
Ga0207428_105942372	3300027907	Populus Rhizosphere	VQQQKVPSKQAPTQRFSVVRLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGPK
Ga0268266_121088252	3300028379	Switchgrass Rhizosphere	MKEQNPKTQPKGRFNIQKLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGPK
Ga0102757_110769741	3300030785	Soil	VEARKPEKQSRFRIEKLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGPKK
Ga0308202_10895801	3300030902	Soil	MQNQQTQQQPSRFRLQKLERRIAPSSANFPPGQFPSGNPAQAPGNSNPNENGGPK
Ga0308202_11186781	3300030902	Soil	MQDQKTTQPKSRFNIVKLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGPKD
Ga0308206_11180921	3300030903	Soil	VEDRKQENKGRFQIDRLEERIAPSNANFPPGQFPSGNPAQAPGNSNPNENGGAK
Ga0308200_10446012	3300030905	Soil	VEDRKQENKGRFQIDRLEERIAPSNANFPPGQFPSGNPAQAPGNSNPNENGGPK
Ga0308200_10485601	3300030905	Soil	VSQEFPVEDRSRQKTPRFRIVTLEERIAPSSANFAPGQFPSGNPAHAPGESNPNENGGSK
Ga0308200_10531522	3300030905	Soil	MQDQKNTQPKSRFNIQKLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGPKD
Ga0308200_11083302	3300030905	Soil	MNQQNQPKAQAPRFNVVKLEDRIAPSSANFPPGQFPSGNPAHAPGNSN
Ga0308200_11093892	3300030905	Soil	MEQQTRDQGRFQIVRLEERIAPSNANFPPGQFPSGNPAQAPGNSNPNENGGPK
Ga0308200_11186382	3300030905	Soil	MQEQKNTQPKSRFNIQKLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGPKD
Ga0308183_10738432	3300030988	Soil	MQDQKNTQPKSRFNIVKLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGPKD
Ga0308189_100886963	3300031058	Soil	MEQQDQVPQQDRKFKIDRLEERIAPSAADFPPGQFPSGNPAQAPGNSNPNENGGPK
Ga0308189_101652012	3300031058	Soil	STDQQAKTQSNRFQIVKLEERIAPSSANFPPGQFPSGNPAQAPGNSNPVQTGQG
Ga0308189_102412302	3300031058	Soil	MQEQKTTQPKGRFNIQKLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGPK
Ga0308189_103614641	3300031058	Soil	MEQQTRNQGRFQIVRLEERIAPSNANFPPGQFPAGNPAHAPGNSNPNENGGPK
Ga0308189_105013991	3300031058	Soil	MNQQNPKAPQTPRKFQVAKLEARIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGPK
Ga0308189_105147331	3300031058	Soil	MDAKMDAKKVEKKDRFSIVKLEERIAPSAANFPPGQFPSGNPAQAPGNSNPNEIGGPKS
Ga0308201_101557132	3300031091	Soil	MEKREEKKESRFQIDRLEERVAPSAADFPPGQFPSGNPAQAPGNSNPNENGGPK
Ga0308201_103134601	3300031091	Soil	MEQQGQKVEKEGRFRIERLEERIAPSNANFPPGQFPAGNPAKAPGNSNPNEHPNK
Ga0308204_101724672	3300031092	Soil	MKNRNEQKKPRFQIIQLEERIAPSNANFPPGQFPSGNPAHAPGNSNPNENGGPKK
Ga0308204_102359871	3300031092	Soil	MDKRDVEKVSKFRIERLEERIAPSAANFPPGQFPSGNPAQAPGNSNPNEQGGQK
Ga0308197_103715672	3300031093	Soil	MKEQNQNTQPKGRFNIQTLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGPK
Ga0308199_11207502	3300031094	Soil	EDRKQENKGRFQIDRLEERIAPSNANFPPGQFPSGNPAQAPGNSNPNENGGPK
Ga0308187_101474372	3300031114	Soil	VQEQKNTQPKRRFNIQKLEERIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGPKD
Ga0308187_102858611	3300031114	Soil	METRKDEKPSKFCIEKLEERIAPSAANFPPGQFPSGNPAQAPGNSNPNENGGPK
Ga0308195_10901632	3300031123	Soil	MQQRVTEKKPRFQVVRLEERIAPSSANFPPGQFPSGNPAHAPGESNPNENGGSKK
Ga0308194_100368083	3300031421	Soil	MQEQKNTQPKGRFNIQKLEERIAPSNANFPPGQFPSGNPAQAPGNSNPNENGGPK
Ga0307408_1013081881	3300031548	Rhizosphere	RAAGEHHMSQHQASAPKFQVRKLEDRIAPSNAKFPPGQFPAGNPAHAPGNSNPNENGGPK
Ga0307413_105073681	3300031824	Rhizosphere	MSQPNAAPASKFQVRKLEERIAPSNAKFPPGQFPAGNPAHAPGNSNPNENGGPKK
Ga0307410_109644022	3300031852	Rhizosphere	DQKNPAAPKRAFKIDKLEDRIAPSSANFPPGQFPSGNPAHAPGNSNPNENGGSKK
Ga0307406_115589901	3300031901	Rhizosphere	MTQQNPQPTPQRKFQVAKLEERIAPSSSKFPPGQAPAGNPAHAPGNSNPNENGGSK
Ga0307412_119100422	3300031911	Rhizosphere	MSQPNAAPASKFQVRKLEERIAPSNAKFPPGQFPSGNPAQAPGNSNPNENGGPKK
Ga0308175_1000987515	3300031938	Soil	MQPIKKNQKTTRFNIVKLEDRIAPSNANFPPGQFPSGNPAKAPGNSNPNENGGPK
Ga0308175_1009898422	3300031938	Soil	MQQPQPKKTFAIRPLEPRIAPSSANFPPGQFPAGNPAQAPGNSNPNENGGPK
Ga0308175_1010780451	3300031938	Soil	MQNPQQKQQSSRLRIQKLEPRIAPSSANFPPGQFPAGNPAHAPGNSNPNENGGPK
Ga0308174_104239982	3300031939	Soil	VKQQQPQPKKFAIRPLEPRIAPSAANFPPGQFPSGNPAQAPGNSNPNENGGPK
Ga0307409_1011205033	3300031995	Rhizosphere	MADQKNPAAPKRAFKIDKLEDRIAPSSANFPPGQFPSGNPAHAPGNSNPNEN
Ga0307411_111540261	3300032005	Rhizosphere	MSQANAAPASKFQVRKLEERIAPSNAKFPPGQFPSGNPAQAPGNSNPNENGGPKK
Ga0314780_051050_265_432	3300034659	Soil	MESHKDNPKGRFEIVKLEERIAPSNANFPPGQFPSGNPAQAPGNSNPNENGGPKD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F038139

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences