Metagenome / Metatranscriptome Family F037454

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F037454
Family Type	Metagenome / Metatranscriptome
Number of Sequences	168
Average Sequence Length	42 residues
Representative Sequence	MKRYLPFIIVVVVALATFGSGTMLYRAKRPQVKNIPE
Number of Associated Samples	146
Number of Associated Scaffolds	168

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.44 %
% of genes near scaffold ends (potentially truncated)	97.02 %
% of genes from short scaffolds (< 2000 bps)	88.10 %
Associated GOLD sequencing projects	142
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.857 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (16.071 % of family members)
Environment Ontology (ENVO)	Unclassified (34.524 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.786 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 43.08% β-sheet: 0.00% Coil/Unstructured: 56.92%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 168 Family Scaffolds
PF13620	CarboxypepD_reg	18.45
PF12801	Fer4_5	1.79
PF00133	tRNA-synt_1	1.79
PF01797	Y1_Tnp	1.19
PF00535	Glycos_transf_2	0.60
PF13676	TIR_2	0.60
PF14371	DUF4412	0.60
PF13187	Fer4_9	0.60
PF02073	Peptidase_M29	0.60
PF13462	Thioredoxin_4	0.60
PF13205	Big_5	0.60
PF05090	VKG_Carbox	0.60
PF03301	Trp_dioxygenase	0.60

COG ID	Name	Functional Category	% Frequency in 168 Family Scaffolds
COG0060	Isoleucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.79
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.79
COG0495	Leucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.79
COG0525	Valyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.79
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	1.19
COG2309	Leucyl aminopeptidase (aminopeptidase T)	Amino acid transport and metabolism [E]	0.60
COG3483	Tryptophan 2,3-dioxygenase (vermilion)	Amino acid transport and metabolism [E]	0.60

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.86 %
Unclassified	root	N/A	7.14 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.86 %
Unclassified	root	N/A	7.14 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.86 %
Unclassified	root	N/A	7.14 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	70.83 %
Unclassified	root	N/A	7.14 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.60 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	70.83 %
Unclassified	root	N/A	7.14 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.60 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	63.10 %
Unclassified	root	N/A	7.14 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.60 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	63.10 %
Unclassified	root	N/A	7.14 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	1.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.60 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	63.10 %
Unclassified	root	N/A	7.14 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1.19 %
unclassified Chthoniobacterales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales	0.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.60 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	63.10 %
Unclassified	root	N/A	7.14 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	0.60 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	0.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.60 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	63.10 %
Unclassified	root	N/A	7.14 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.60 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	0.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.60 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2065487018\|GPINP_F5MS3JC02IE9OY	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	523	Open in IMG/M
2124908045\|KansclcFeb2_ConsensusfromContig819397	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	651	Open in IMG/M
2162886013\|SwBSRL2_contig_1497482	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2301	Open in IMG/M
2166559005\|cont_contig02320	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2547	Open in IMG/M
2170459007\|GJE5RH004JWJSW	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	507	Open in IMG/M
2170459010\|GIO7OMY02HCIB9	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	537	Open in IMG/M
3300000550\|F24TB_12991778	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300000650\|AP72_2010_repI_A1DRAFT_1025600	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300000651\|AP72_2010_repI_A10DRAFT_1034485	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	654	Open in IMG/M
3300000787\|JGI11643J11755_11643374	Not Available	523	Open in IMG/M
3300000890\|JGI11643J12802_12069248	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	693	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1067986	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300001431\|F14TB_104131264	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300002245\|JGIcombinedJ26739_101490014	Not Available	571	Open in IMG/M
3300005171\|Ga0066677_10561138	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	652	Open in IMG/M
3300005178\|Ga0066688_10367992	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	931	Open in IMG/M
3300005178\|Ga0066688_10448486	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	834	Open in IMG/M
3300005180\|Ga0066685_11085996	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300005186\|Ga0066676_10299550	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1063	Open in IMG/M
3300005289\|Ga0065704_10194297	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1171	Open in IMG/M
3300005339\|Ga0070660_101666434	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	543	Open in IMG/M
3300005447\|Ga0066689_10059340	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2082	Open in IMG/M
3300005540\|Ga0066697_10128044	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1492	Open in IMG/M
3300005552\|Ga0066701_10539789	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	718	Open in IMG/M
3300005553\|Ga0066695_10779137	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	553	Open in IMG/M
3300005558\|Ga0066698_11006750	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300005560\|Ga0066670_10368461	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300005574\|Ga0066694_10156956	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1079	Open in IMG/M
3300005586\|Ga0066691_10798043	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	557	Open in IMG/M
3300005598\|Ga0066706_10147539	All Organisms → cellular organisms → Bacteria	1766	Open in IMG/M
3300005764\|Ga0066903_100046713	All Organisms → cellular organisms → Bacteria	5206	Open in IMG/M
3300005764\|Ga0066903_102419198	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1016	Open in IMG/M
3300005764\|Ga0066903_102676669	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	967	Open in IMG/M
3300005764\|Ga0066903_107018968	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300005983\|Ga0081540_1200955	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	725	Open in IMG/M
3300005985\|Ga0081539_10056953	Not Available	2166	Open in IMG/M
3300006031\|Ga0066651_10111137	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1393	Open in IMG/M
3300006032\|Ga0066696_10079558	All Organisms → cellular organisms → Bacteria	1921	Open in IMG/M
3300006163\|Ga0070715_10185233	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1047	Open in IMG/M
3300006173\|Ga0070716_100810856	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	725	Open in IMG/M
3300006796\|Ga0066665_10288576	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1314	Open in IMG/M
3300006954\|Ga0079219_12511616	Not Available	501	Open in IMG/M
3300007076\|Ga0075435_101892078	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300007265\|Ga0099794_10653580	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	558	Open in IMG/M
3300009012\|Ga0066710_100516904	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1802	Open in IMG/M
3300009012\|Ga0066710_102448271	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	756	Open in IMG/M
3300009012\|Ga0066710_104034956	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300009100\|Ga0075418_10948495	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	930	Open in IMG/M
3300009101\|Ga0105247_10341129	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1051	Open in IMG/M
3300009137\|Ga0066709_102364576	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	724	Open in IMG/M
3300009137\|Ga0066709_103411740	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	577	Open in IMG/M
3300009143\|Ga0099792_10231759	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1066	Open in IMG/M
3300009545\|Ga0105237_10179936	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2115	Open in IMG/M
3300009545\|Ga0105237_11692694	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	640	Open in IMG/M
3300009553\|Ga0105249_11236515	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	818	Open in IMG/M
3300010042\|Ga0126314_10477946	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	903	Open in IMG/M
3300010046\|Ga0126384_12438556	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	507	Open in IMG/M
3300010301\|Ga0134070_10227510	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	691	Open in IMG/M
3300010303\|Ga0134082_10042163	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1739	Open in IMG/M
3300010325\|Ga0134064_10299459	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	612	Open in IMG/M
3300010325\|Ga0134064_10360293	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	570	Open in IMG/M
3300010335\|Ga0134063_10559470	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	578	Open in IMG/M
3300010336\|Ga0134071_10243594	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300010358\|Ga0126370_11564808	Not Available	629	Open in IMG/M
3300010359\|Ga0126376_10820446	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	910	Open in IMG/M
3300010360\|Ga0126372_13104005	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	516	Open in IMG/M
3300010361\|Ga0126378_12259035	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	621	Open in IMG/M
3300010362\|Ga0126377_11451933	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	759	Open in IMG/M
3300010362\|Ga0126377_12561451	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300010376\|Ga0126381_100055161	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4887	Open in IMG/M
3300011119\|Ga0105246_12003562	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	559	Open in IMG/M
3300012096\|Ga0137389_10601386	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	945	Open in IMG/M
3300012199\|Ga0137383_10477355	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	913	Open in IMG/M
3300012199\|Ga0137383_11114178	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	571	Open in IMG/M
3300012201\|Ga0137365_10129259	All Organisms → cellular organisms → Bacteria	1899	Open in IMG/M
3300012202\|Ga0137363_10149518	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1833	Open in IMG/M
3300012205\|Ga0137362_10821756	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	796	Open in IMG/M
3300012207\|Ga0137381_10606735	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	953	Open in IMG/M
3300012207\|Ga0137381_11104009	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300012209\|Ga0137379_10463915	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1175	Open in IMG/M
3300012210\|Ga0137378_10799977	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	855	Open in IMG/M
3300012210\|Ga0137378_11879517	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	501	Open in IMG/M
3300012285\|Ga0137370_10555371	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	706	Open in IMG/M
3300012353\|Ga0137367_11223355	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	501	Open in IMG/M
3300012354\|Ga0137366_10018055	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	5519	Open in IMG/M
3300012354\|Ga0137366_10030793	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4161	Open in IMG/M
3300012356\|Ga0137371_10410507	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1050	Open in IMG/M
3300012356\|Ga0137371_11079857	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	605	Open in IMG/M
3300012357\|Ga0137384_10107617	All Organisms → cellular organisms → Bacteria	2328	Open in IMG/M
3300012358\|Ga0137368_10096658	All Organisms → cellular organisms → Bacteria	2304	Open in IMG/M
3300012582\|Ga0137358_10433130	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	888	Open in IMG/M
3300012912\|Ga0157306_10192012	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300012914\|Ga0157297_10133077	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	790	Open in IMG/M
3300012922\|Ga0137394_10281820	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1421	Open in IMG/M
3300012925\|Ga0137419_10410565	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1060	Open in IMG/M
3300012927\|Ga0137416_10906642	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	784	Open in IMG/M
3300012929\|Ga0137404_10842984	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	834	Open in IMG/M
3300012948\|Ga0126375_10995853	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	682	Open in IMG/M
3300012955\|Ga0164298_10979234	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	623	Open in IMG/M
3300012961\|Ga0164302_11576987	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300012977\|Ga0134087_10339611	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	715	Open in IMG/M
3300012986\|Ga0164304_10372638	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1005	Open in IMG/M
3300014166\|Ga0134079_10200039	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300014968\|Ga0157379_11678553	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300015242\|Ga0137412_10056823	All Organisms → cellular organisms → Bacteria	3187	Open in IMG/M
3300015356\|Ga0134073_10171753	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	701	Open in IMG/M
3300015372\|Ga0132256_102286299	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	644	Open in IMG/M
3300015373\|Ga0132257_104632557	Not Available	500	Open in IMG/M
3300015374\|Ga0132255_102946979	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	727	Open in IMG/M
3300016294\|Ga0182041_11051266	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	738	Open in IMG/M
3300017657\|Ga0134074_1248431	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	640	Open in IMG/M
3300017657\|Ga0134074_1362711	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	536	Open in IMG/M
3300017659\|Ga0134083_10144396	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300017994\|Ga0187822_10119640	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	821	Open in IMG/M
3300018032\|Ga0187788_10510553	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300018072\|Ga0184635_10083865	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1251	Open in IMG/M
3300019877\|Ga0193722_1079420	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	807	Open in IMG/M
3300019881\|Ga0193707_1006499	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4059	Open in IMG/M
3300019886\|Ga0193727_1000142	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	24102	Open in IMG/M
3300019886\|Ga0193727_1012460	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3224	Open in IMG/M
3300019999\|Ga0193718_1074705	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300020001\|Ga0193731_1041343	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1218	Open in IMG/M
3300020001\|Ga0193731_1137052	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	611	Open in IMG/M
3300020003\|Ga0193739_1043081	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300020004\|Ga0193755_1234258	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300020006\|Ga0193735_1017512	All Organisms → cellular organisms → Bacteria	2232	Open in IMG/M
3300020006\|Ga0193735_1177319	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	528	Open in IMG/M
3300020015\|Ga0193734_1020473	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1249	Open in IMG/M
3300020022\|Ga0193733_1064349	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1032	Open in IMG/M
3300021073\|Ga0210378_10242069	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	684	Open in IMG/M
3300021344\|Ga0193719_10177712	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	913	Open in IMG/M
3300021445\|Ga0182009_10116726	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1236	Open in IMG/M
3300021560\|Ga0126371_11055535	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	953	Open in IMG/M
3300022694\|Ga0222623_10118853	Not Available	1029	Open in IMG/M
3300022694\|Ga0222623_10302415	Not Available	614	Open in IMG/M
3300025901\|Ga0207688_10334572	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300025910\|Ga0207684_11557258	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300025918\|Ga0207662_11086183	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	569	Open in IMG/M
3300025932\|Ga0207690_10325449	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1209	Open in IMG/M
3300026095\|Ga0207676_11175091	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	760	Open in IMG/M
3300026310\|Ga0209239_1172251	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	828	Open in IMG/M
3300026318\|Ga0209471_1195085	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	777	Open in IMG/M
3300026324\|Ga0209470_1249227	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	713	Open in IMG/M
3300026334\|Ga0209377_1337156	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300026343\|Ga0209159_1203288	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	632	Open in IMG/M
3300026343\|Ga0209159_1247529	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300026548\|Ga0209161_10244248	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	942	Open in IMG/M
3300026693\|Ga0208709_102945	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	699	Open in IMG/M
3300028589\|Ga0247818_10911936	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	618	Open in IMG/M
3300028719\|Ga0307301_10092062	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300028793\|Ga0307299_10322852	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300028799\|Ga0307284_10278658	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	669	Open in IMG/M
3300028875\|Ga0307289_10180977	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	867	Open in IMG/M
3300028876\|Ga0307286_10414900	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	506	Open in IMG/M
3300030945\|Ga0075373_11534953	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	525	Open in IMG/M
3300031057\|Ga0170834_100676550	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	808	Open in IMG/M
3300031469\|Ga0170819_16611292	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	620	Open in IMG/M
3300031474\|Ga0170818_104202470	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	515	Open in IMG/M
3300031719\|Ga0306917_10296940	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1247	Open in IMG/M
3300031946\|Ga0310910_11292675	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	564	Open in IMG/M
3300031947\|Ga0310909_11349837	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	572	Open in IMG/M
3300032174\|Ga0307470_10335491	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1042	Open in IMG/M
3300032770\|Ga0335085_12191631	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300033412\|Ga0310810_11010932	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	709	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.10%
Host-Associated	Host-Associated	11.31%
Engineered	Engineered	0.60%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.12%
Plants	Host-Associated → Plants	11.31%
Aquatic	Environmental → Aquatic	2.98%
Modeled	Engineered → Modeled	0.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.14%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.17%
Sediment	Environmental → Aquatic → Sediment	1.79%
Freshwater	Environmental → Aquatic → Freshwater	1.19%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.60%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.60%
Loam	Environmental → Terrestrial → Soil → Loam	8.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.36%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.79%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.19%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.60%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.60%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.60%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	20.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.57%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.19%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.60%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.60%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.60%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.60%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	16.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.17%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.19%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.19%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.19%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.19%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.19%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.19%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.19%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.60%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.60%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.60%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.60%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.60%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.60%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.60%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.60%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.60%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.60%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.60%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2065487018	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000650	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A1	Environmental	Open in IMG/M
3300000651	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020015	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026693	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN595 (SPAdes)	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPINP_00756510	2065487018	Soil	MKRYLPFVIVAGVALVALGSGAMLYQAKRPQLRPIPENKAVSGTTDAESL
KansclcFeb2_05265530	2124908045	Soil	MKRYLPFVIVALVALATIGSGAMLYRAKRPHVLSIPENKTL
SwBSRL2_0203.00000500	2162886013	Switchgrass Rhizosphere	VKRYLPFIIVIVVASITFGTGAALCRAYKPQVLTL
cont_0320.00000350	2166559005	Simulated	MKRYLPFVIVALVALATIGSGAMLYRAKRPHVLSIPEDKTLSAKS
L02_07712740	2170459007	Grass Soil	MKRYLPFVIVGVVALATVGSGAMLYRAKRPHVLSIPE
F62_05908210	2170459010	Grass Soil	MKRYLPFVIVVGVALATFGSGAMLYRAKHEQLQAIPQDKASSANSG
F24TB_129917781	3300000550	Soil	RIVLMKRYLPFIIISAVALTTLGGGGAMLYWAKRPHHLVIPADKMAG
AP72_2010_repI_A1DRAFT_10256001	3300000650	Forest Soil	MKRYLPFVIVFGVALVTLGSGTMLYRAKLPQVKNIPDTQSVSA
AP72_2010_repI_A10DRAFT_10344851	3300000651	Forest Soil	MKRYLPFVIVFGVALVTLGSGTMLYRAKLPQVKNIPD
JGI11643J11755_116433741	3300000787	Soil	MXRYLPFIIVAVVAIXXTTLGSGALLYNAKRPHLLT
AP72_2010_repI_A100DRAFT_10607141	3300000837	Forest Soil	MKRYLPFVIVFGVALVTLGSGTMLYRAKLPQVKNIPDAQSVSAGSDSSAHIRGKPD
JGI11643J12802_120692482	3300000890	Soil	MKRYLPFIIVAVVAIAALGSGAALYRAKLPHLLTISEDSVSGKGDPKSMHI
AP72_2010_repI_A001DRAFT_10679861	3300000893	Forest Soil	MKRYLPFVIVFGVALVTLGSGTMLYRAKLPQVKXI
F14TB_1041312643	3300001431	Soil	MKRYXXXXXXIVVALATLGSGTMLYRAKRPQLKNIPESQ
JGIcombinedJ26739_1014900142	3300002245	Forest Soil	MKRSLPCLIVIVVAAVAIGGGVALYRAKRPRTLSIPK
Ga0066677_105611381	3300005171	Soil	MKRYLPLVIVVGVALATFGSGAMLYRAKLPQVKNIPESQSLSSKSG
Ga0066688_103679922	3300005178	Soil	MKRYLPLIIGVAAIATLGSGAMLYRAKLPRPLTISEDKSVSREGDAESM
Ga0066688_104484862	3300005178	Soil	MKRYLPFVIVALVALATIGSGAMLYRARRPHVLSIPENKTLSAKSDADAPHIRGNPD
Ga0066685_110859961	3300005180	Soil	MKRYLPFVIVVVVALATFGSGAMLYRAKLPQLKNISESQRLAAKGGAES
Ga0066676_102995503	3300005186	Soil	MKRYLPFVIVVGVALVTFGSGTMLYRAKRPQVKNIPESQGVPARSD
Ga0065704_101942973	3300005289	Switchgrass Rhizosphere	MKRYLPFVIVVGVALVTFGSGTMLYRAKRPQVKNIPEGQSVPAR
Ga0070660_1016664341	3300005339	Corn Rhizosphere	MKRYLPFVIVVGVALATFGSGAMLYRTKHEQLQAIPEDKALSANSGS
Ga0066689_100593401	3300005447	Soil	MKRYLPFVIVAGVALIALGSGAILYRAKRQQQQLRPIPENKA
Ga0066697_101280441	3300005540	Soil	MKRYLPFVIVALVALATIGSGAMLYRARRPHVLSIPENKTLSAKSDADAPHIRGNPDAPV
Ga0066701_105397892	3300005552	Soil	MKRYLPFVIVAAVGLAALGSGAMLYQAKRPHLRPIPENKGLPET
Ga0066695_107791371	3300005553	Soil	MKRYLPFVIVAAVALATLGSGAMLYRAKRSQLLSISANKVLSGK
Ga0066698_110067502	3300005558	Soil	MKRYLPFVIVIGVALTTLGSGTLLYRAKRQQIKNIPESES
Ga0066670_103684613	3300005560	Soil	MKRYLPFVIVGGIALATLGIGAMLYRAKRPQLLTIP
Ga0066694_101569563	3300005574	Soil	MKRYLPFVIVALVALATIGSGAMLYRARRPHVLSIPENKTVSAKGDAGAPHIR
Ga0066702_100930501	3300005575	Soil	MRFFLMKRYLPFVIIAAVALATLVSGAMLYRAKRL
Ga0066691_107980431	3300005586	Soil	MKRYLPFIIVVGVALGTFGSGTMLYRAKRPQVKNIPESQSV
Ga0066706_101475394	3300005598	Soil	MKRYLPFIIVVVVALATFGSGTMLYRAKRPQVKNIPE
Ga0066903_1000467137	3300005764	Tropical Forest Soil	MKRYLPFVIVLGVALVTLGSGAVLYRAKRPQVKNI
Ga0066903_1018926314	3300005764	Tropical Forest Soil	MKRYLPFVIVFGVALVTLGSGTMLYRAKLPQVKNIPDTQSVSAGSDSSAHIRG
Ga0066903_1024191981	3300005764	Tropical Forest Soil	MKRYLPFVIVVGVALVAFGSGTMLYRAKRPQVKNIPESQ
Ga0066903_1026766693	3300005764	Tropical Forest Soil	MKRYLPFVIVVGVALVAFGSGTMLYRAKRPQVKNI
Ga0066903_1070189681	3300005764	Tropical Forest Soil	MKRYLPFVIVILVALATFGSGTILYRAKRPQLHDIPASQSVQANGDKESA
Ga0081540_12009551	3300005983	Tabebuia Heterophylla Rhizosphere	MKRYLPFVIVIAVALTAFGSGALLYRAKLPQVKNITD
Ga0081539_100569532	3300005985	Tabebuia Heterophylla Rhizosphere	MKRYLPFIIVVTVAIATLGSGAMLYHSKRESLAAIPATKAS
Ga0066651_101111371	3300006031	Soil	MTRYLPFVIVAGVALVALGSGAMLYRAKRQQLRPIPENKALSETTDAESLHIR
Ga0066696_100795584	3300006032	Soil	MKRYLPFIIVGAVALATLGSGAMLYRAKRPHLLTIPTDKNVSGKGA
Ga0070715_101852333	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MKRYLPFIIVVGVALVTFGSGTMLYRAKRPQVKNIP
Ga0070716_1008108563	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKRYLPFIIVLGVALVTFGSGTMLYRAKRPQVKNIPESQ
Ga0066665_102885761	3300006796	Soil	MKRYLPFVIVIGIALSTLGSGTLLYRAKRQQLKNIPESESVL
Ga0079219_125116161	3300006954	Agricultural Soil	MKRYLPFIIVLAVGLATFGSGAILYRAKHSQLQAIPED
Ga0075435_1018920781	3300007076	Populus Rhizosphere	MKRYLPFVIVIVVALAAFGGATMLYRAKRPQVKNI
Ga0099794_106535802	3300007265	Vadose Zone Soil	MKRYLPFIIVVGAALVTFGSGTMLYRAKRPQVKNIPESQSVPARS
Ga0066710_1005169043	3300009012	Grasslands Soil	MKRYLPFIIVAVVAIATLGSGAMLYRAKLPHPLTIPEDKS
Ga0066710_1024482713	3300009012	Grasslands Soil	MTRYLPFVIVAGVALVALGSGAMLYRAKRQQLRPIPENKALS
Ga0066710_1040349562	3300009012	Grasslands Soil	MKRYLLFIIVVAVALGTFGSGTMLYRAKRPQVKNIPESQSV
Ga0075418_109484953	3300009100	Populus Rhizosphere	MKHYLPFIVVVGVALATFGSGAMLYRAKHSQLQALP
Ga0105247_103411291	3300009101	Switchgrass Rhizosphere	MKRYLPFVIVVGVALATFGSGAMLYRAKHEQLQAIPQDKALSGNSDAES
Ga0066709_1023645761	3300009137	Grasslands Soil	MKRYLPFVIVAAVALATLGSGAMLYRAKRSQLLSISANKVLSGKN
Ga0066709_1034117402	3300009137	Grasslands Soil	MKRYLPFVIVALVALATIGSGAMLYRARRPHVLSISENKTLSAKSD
Ga0099792_102317591	3300009143	Vadose Zone Soil	MKRYLPFIIVVGVALATFGSGTILYRAKRPQVKNIPE
Ga0105237_101799361	3300009545	Corn Rhizosphere	MKRYLPFVIIVGVALGTFGSGAMLYRAKHPQLQAMPEEKA
Ga0105237_116926942	3300009545	Corn Rhizosphere	MKRYLPFVIVVGVALATFGSGAMLYRAKHEQLQAIPQDKALSG
Ga0105238_122668492	3300009551	Corn Rhizosphere	MKRYLPFVIIVGVALGTFGSGAMLYRAKHPQLQAMPEEKALSGNSGAE
Ga0105249_112365152	3300009553	Switchgrass Rhizosphere	MKRYLPFIIVVGVALVTFGSGAMLYHAKRPQLKAIPEDK
Ga0126314_104779463	3300010042	Serpentine Soil	MKRYLPFVIVVGVALVTFGSGTMLYRAKHSQLQTIPQDKVPSANS
Ga0126384_124385562	3300010046	Tropical Forest Soil	MKRYLPFLIVVLVALATIGSGAMLYRVKRPHVSAIPENK
Ga0134070_102275101	3300010301	Grasslands Soil	MKRYLPFVIVALVALATIGSGAMLYRARRPHVLSIPENKTVSAKGDAGAPHIRG
Ga0134082_100421631	3300010303	Grasslands Soil	MKRYLPFVIVALVALATIGSGAMLYRARRPHVLSIPENKTLSAKSDAEAP
Ga0134064_102994592	3300010325	Grasslands Soil	MKRYLPFVIVALVALATIGSGAMLYRARRPHVLSIPENKTLSAKSDA
Ga0134064_103602931	3300010325	Grasslands Soil	MKRYLPFLIVATVALVALGIGAMLYRAKRTQLLAVSENRSVS
Ga0134063_105594701	3300010335	Grasslands Soil	MKRYLPFVIVAVVALATIGSGAMLYHAKKPHVLSIPEDKMVGKSGT
Ga0134071_102435941	3300010336	Grasslands Soil	MQRYLPFIIVIAIALATLGSGAMLYRAKRPQLLTIPGSKA
Ga0126370_115648081	3300010358	Tropical Forest Soil	MKRYLPFVIVIGVALATVGSGALLYRAKQEHIKNIPETQTLSAKSKVEPAHVRGNP
Ga0126376_108204462	3300010359	Tropical Forest Soil	MKRYLPFVIVAVVALATLGSGAMLYRAKQPHVQSIPQ
Ga0126372_131040052	3300010360	Tropical Forest Soil	MKRYLPFIIVGIVALATLGSGALLYQAKRPHLLTIPANKAVSGKG
Ga0126378_122590352	3300010361	Tropical Forest Soil	MKRYLPFVIVVLVALATFGSGTMLYRAKRPQVRNIPEGQSVAAK
Ga0126377_114519331	3300010362	Tropical Forest Soil	MKRYLPFIIVVGVALITFGSGAMLYRAKRPQVKNIPESQS
Ga0126377_125614512	3300010362	Tropical Forest Soil	MKRYLPFVIVIVVALGTLGSGAMLYRAKRPQVKNIP
Ga0126381_1000551614	3300010376	Tropical Forest Soil	MKRYLPSVIVIGVALATLGSGAVLYRAKRPQVKDISDNPNVATQ
Ga0105246_120035622	3300011119	Miscanthus Rhizosphere	MKRYLPFVIIVGVALGTFGSGAMLYRAKHPQLQAMPEE
Ga0137389_106013863	3300012096	Vadose Zone Soil	MKRYLPFVIVAGVALAALGSGAMLYRAKRPQLQAIPASNSVA
Ga0137383_104773552	3300012199	Vadose Zone Soil	MKRYLPFVIVVGVALVTFGSGTMLYRAKRPQVKNIPESQGVPARSDTSAHV
Ga0137383_111141781	3300012199	Vadose Zone Soil	MKRYLPFIIIGVVALGTLGSGAMLYRVKRPHLLTIPED
Ga0137365_101292593	3300012201	Vadose Zone Soil	MKRYLPFIIIGVVALGTLGSGAMLYRVKRPHLLTIPEDKI
Ga0137363_101495181	3300012202	Vadose Zone Soil	MKRYLPFVIVALVALATIGSGAMLYRARRPHVLSIPENKT
Ga0137362_108217561	3300012205	Vadose Zone Soil	MKRYLPFVIVALVALATIGSGAMLYRARRPHVLSIP
Ga0137381_106067352	3300012207	Vadose Zone Soil	MKRYLPFIIIGVVALATLGGGAMLYRAKRPHLLTIPEDKIVSEK
Ga0137381_111040091	3300012207	Vadose Zone Soil	MKRYLPFIIIGVVALGTLGSGAMLYRVKRPHLLTIPEDKIVSEKNNSES
Ga0137379_104639153	3300012209	Vadose Zone Soil	MKRYLPFVIVAGVALVALGSGAILYRAKRQQQQLRPIPE
Ga0137378_107999772	3300012210	Vadose Zone Soil	MKRYLPFIIIGVVALGTLGSGAMLYRVKRPHLLTIP
Ga0137378_118795172	3300012210	Vadose Zone Soil	MKRYLPFVIVIVVALATLGSGTILYRAKRPQLHNI
Ga0137370_105553712	3300012285	Vadose Zone Soil	MKRYLPFVIVTGAALVTLGSGAMLYRAKRPQLMSIPVNKVLSGKSTE
Ga0137367_112233552	3300012353	Vadose Zone Soil	MKRYLPFIIVAVAAIATLGSGAMLYRAKLPRPLTISEDKSVSREGDAESM
Ga0137366_100180556	3300012354	Vadose Zone Soil	MKRYLPFVIVAGIALATLGSGALLYHAKRPHLRATPETK
Ga0137366_100307934	3300012354	Vadose Zone Soil	MKRYLPFVIVTLVALATIGSGAMLYRARRPHVLSIPENKTLSAKSDAEAPHIRGNPDA
Ga0137371_104105071	3300012356	Vadose Zone Soil	MKRYLPFIIIGVVALGTLGSGAMLYRAKRPHLLTIPEDKIVS
Ga0137371_110798571	3300012356	Vadose Zone Soil	MKRYLPFVIVSAVALITLAGGTMLYHTKHLPLLTISKDHVAP
Ga0137384_101076171	3300012357	Vadose Zone Soil	MKRYLPFVIVAGVALAALGSGAMLYRAKRPQLQAIPASNS
Ga0137368_100966581	3300012358	Vadose Zone Soil	MKRYLPFVIVAVIALATLGSGAMLYRAKRPQLLTILEDKMLSGKVDAES
Ga0137358_104331302	3300012582	Vadose Zone Soil	MKRYLPFVIVAVVALATIGSGAMLYHAKKPHVLSIPED
Ga0157306_101920121	3300012912	Soil	MKRYLPFVIVVGVALVTFGSGAMLYRTKHEQLQAIPEDKA
Ga0157297_101330771	3300012914	Soil	MKRYLPFVIVVVVALATFGSGAMLYRAKRPQLHAI
Ga0137394_102818203	3300012922	Vadose Zone Soil	MKRYLPFVIVVGVALATFGSGAMLYRAKHSQLQAVPEDKAHSANSGS
Ga0137419_104105654	3300012925	Vadose Zone Soil	MKRFLPFIIVAVVAAAAICGGAILYQAKQPHLLTIPQDK
Ga0137416_109066422	3300012927	Vadose Zone Soil	MKRYLPFVIVAGIALATLGSGALLYHAKRPQLRAIPESTTAPGKS
Ga0137404_108429843	3300012929	Vadose Zone Soil	MKRYLPFVIVAAVALATLGSGAMLYRAKRSQLLSMPENRSLGGKSGTESM
Ga0126375_109958532	3300012948	Tropical Forest Soil	MKRYLPFVIVVGVALVTFGSGAVLYRAKLPQVKNIPENQSVPARGDVSAHVR
Ga0164298_109792341	3300012955	Soil	MKRYLPFIIVVGVALVTFGSGAMLYRAKHSQLQAI
Ga0164302_115769872	3300012961	Soil	MKRYLPFVIVAAVALVVLGSGALLYQAKRPQLHAIPASNSVAGKKDA
Ga0134087_103396111	3300012977	Grasslands Soil	MKRYLPFVIVALVALATIGSGAMLYRARRPHVLSISENKTLSAKTD
Ga0164304_103726381	3300012986	Soil	MKRYLPFIIVVGVALATFGSGAMLYHAKRPQVKNIPESQSAPATSDTSAH
Ga0134079_102000391	3300014166	Grasslands Soil	MKRYLPFVIVIGIALTTLGSGTLLYRAKRPQLKNIPESESVLAKTNT
Ga0157379_116785532	3300014968	Switchgrass Rhizosphere	MKRYLPFIIVAVVAIATLGSGAMLYRAKLPHPLMIPEGK
Ga0137412_100568231	3300015242	Vadose Zone Soil	MKRYLPFVIVVGVALVTLGSGTLLYRAKRPHVKNIPESQGVAARS
Ga0134073_101717531	3300015356	Grasslands Soil	MKRYLPFVITAAVALATLVSGAMLYRAKLLPALTIPEN
Ga0132256_1022862991	3300015372	Arabidopsis Rhizosphere	MNRYLPFVIVAVVALATIGSGAMLYRAKRPHVLSIPEDKTL
Ga0132257_1046325571	3300015373	Arabidopsis Rhizosphere	MKRYLPFIIVIAVALITFASGALLYRAKLPQVKNISDSQSASGKN
Ga0132255_1029469792	3300015374	Arabidopsis Rhizosphere	MKRYLPFVIVVGVALATFGSGAMLYRAKHEQLQPIPQENALPANSC
Ga0182041_110512662	3300016294	Soil	MKRYLPFVIVFGVALVTLGSGTMLYRAKRPQVKNIPESQ
Ga0134074_12484312	3300017657	Grasslands Soil	MKRYLPFIIIGVVALGTLGSGAMLYRAKRPHLLTIPEDK
Ga0134074_13627112	3300017657	Grasslands Soil	MKRYLPFVIVVAAALVALGSGAMLYRAKRPQLQAIPA
Ga0134083_101443961	3300017659	Grasslands Soil	MKRYLPFIIVGGIALATIGSGAMLYWAKRPQLLTIPEEKILPGKGGAESV
Ga0187822_101196402	3300017994	Freshwater Sediment	MKRFLPFIIVAVVAAAAICGGAILYQAKLPHLLTIPQDKAVPGKPDTE
Ga0187788_105105532	3300018032	Tropical Peatland	MKRYLPFLIVVVVALATFGSGAMLYHAKLPQLKNIPESQRLPTKSGAESVHIRGNP
Ga0184635_100838652	3300018072	Groundwater Sediment	MKRYLPFIIVGAIALTTLGSGALLCNAKRPHLLIISA
Ga0193722_10794202	3300019877	Soil	MKRYLPFIIVVVGALVTLASGTVLYRAKRPSVFTIPKSALV
Ga0193707_10064991	3300019881	Soil	MKRYLPFVIVVGVALVTFGSGTMLYRAKRPQLKSIPESQGVPA
Ga0193727_100014222	3300019886	Soil	MKRYLPFIIVAVVAIAALGSGAILYRAKLPHLLTIPEDKSVSGKGDTE
Ga0193727_10124601	3300019886	Soil	MKRYLPFIIVAVVAIATLGSGAALYRAKLPHLVTISED
Ga0193718_10747051	3300019999	Soil	MKRYLPFFIVGGIALAALGSGAMLYRAKRPQLLTIP
Ga0193731_10413431	3300020001	Soil	MKRYLPFVIVVGVALVTFGSGTMLYRAKHSQLQAIPQDKALSSNS
Ga0193731_11370521	3300020001	Soil	MKRYLPFLIVATVALIAVGSGAMLYRTKRAQLLPVSENRS
Ga0193739_10430813	3300020003	Soil	MKRYLPFIIVAVVAIATLGSGAMLYRAQLPHPLTIPE
Ga0193755_12342582	3300020004	Soil	MKRYLPFVIVVGVALVTFGSGTMLYRAKRPQLKSI
Ga0193735_10175124	3300020006	Soil	MKRYLPFVIVAGVALAALGSGAMLYRAKRPQLNAIPASNSVA
Ga0193735_11773191	3300020006	Soil	MKRYLPFLIVAAVALVTVGSGTMLYRTKRAQLLPVSENRS
Ga0193734_10204733	3300020015	Soil	MKRYLPFVIVVGVALVTFGSGAMLYRAKSQQLQAIPQDKAL
Ga0193733_10643491	3300020022	Soil	MRRYLPFGIVGAVALLTVGGGALLYRAKRPAALTIP
Ga0210378_102420692	3300021073	Groundwater Sediment	MKRYLPFIIVAVVAIATLGSGAMLYRAQLPHPLTIPEDK
Ga0193719_101777121	3300021344	Soil	MKRYLPFLIVATVALIAVGSGAMLYRTKRAQLLPVSENRSVPGKSGTESMHIRGNPD
Ga0182009_101167262	3300021445	Soil	MPSLKRYLPFVIIAGVALATLGSGAILYWTKRSHPLAIP
Ga0126371_110555351	3300021560	Tropical Forest Soil	MKRYLPFVIVFGVALVTLGSGTMLYRAKLPQVKNIPDTQSVSAGSDS
Ga0222623_101188532	3300022694	Groundwater Sediment	MKSYLPFIIVAVVAIATLGSGAMLYRAQLPHPLTIPEDKSVSGK
Ga0222623_103024151	3300022694	Groundwater Sediment	MKRFLPFIIVGAIALTTLGSGALLYNAKRPHLLTISAEETTSGGLA
Ga0207688_103345721	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MKRYLPFIIVAVVAIATLGSGAMLYRAKVPHSLTIPED
Ga0207684_115572581	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKRYLPFVIVVVVALATFGSGAILYRAKRPQLRNLPESQ
Ga0207662_110861832	3300025918	Switchgrass Rhizosphere	MKRYLPFIIVVGVALVTFGSGAMLYHAKRPQLKAIP
Ga0207690_103254494	3300025932	Corn Rhizosphere	MKRYLPFIIVAVVAIATLGSGAMLYRAKLPHPLMIPEGKSLSGKS
Ga0207676_111750912	3300026095	Switchgrass Rhizosphere	MKRYLPFIIVIGVALITFGSGALLYRAKLPQVKDI
Ga0209239_11722511	3300026310	Grasslands Soil	MKRYLPFVIVVVVALATFGSGAILYRAKRPQLRNLPENQSVP
Ga0209471_11950852	3300026318	Soil	MKRYLPFVIVIGVALTTLGSGTLLYRAKRQQLKNIPESESVLAKT
Ga0209470_12492271	3300026324	Soil	MKRYLPFVIVAVVALATIGSGAMLYHAKKPHVLSIPEDKM
Ga0209377_13371562	3300026334	Soil	MQRYLPFIIVIAIALATLGSGAMLYRAKRPQLLAIPGSKALPG
Ga0209159_12032881	3300026343	Soil	MKRYLPFVIVAGVALAALGSGAMLYRAKRPQLQAIPAS
Ga0209159_12475291	3300026343	Soil	MKRYLPFVIVAGVALVALGSGAILYRAKRQQQQLRPIPENKAVSGTTDAESLHIRGN
Ga0209161_102442481	3300026548	Soil	MKRYLPFVIVIGIALTTLGSGTLLYRAKRQQLKNIPESE
Ga0208709_1029451	3300026693	Soil	MKRFLPFIIVVGVALVTFGSGTMLYRAKRPQVKNIPESQRVP
Ga0247818_109119362	3300028589	Soil	MKHYLPFIVVVGVALATFGSGAMLYRAKHSQLQALPED
Ga0307301_100920621	3300028719	Soil	MKRYLPFIIIGVVALGTLGSGAMLYRVKRPHLLTIPEDKIVSEKNNSESIH
Ga0307299_103228521	3300028793	Soil	MKRYLPFIIIGVVALGTLGSGAILYRVKRPHLLTIPED
Ga0307284_102786582	3300028799	Soil	MKRYLPFVIVVGVALATFGSGTVLYRTKHSQLQAIPQDKALSAN
Ga0307289_101809773	3300028875	Soil	MKRYLPFVIVVGVALVTFGSGAMLYRAKSQQLQAIPQ
Ga0307286_104149001	3300028876	Soil	MKRYLPFVIVVGVALATFGSGTVLYRTKHSQLQAIPQ
Ga0075373_115349531	3300030945	Soil	MKRYLPFIIVFGVALVTFGSGTMLYRAKRPQVKNIPESQ
Ga0170834_1006765501	3300031057	Forest Soil	MKRYLPFITVVVVALVTLATGTVLYRAKRPAVLTIP
Ga0170819_166112922	3300031469	Forest Soil	MKRYLPFVVVVGVALVTFGSGTMLYRAKRPQVKNMPESQ
Ga0170818_1042024702	3300031474	Forest Soil	MKRYLPFIIVVGVALVTFGSGTMLYRAKRPQVKNIPES
Ga0306917_102969403	3300031719	Soil	MKRYLPFVIVAVVALATFGSGAMLYRAKLPQLRNIPESQRLAAKS
Ga0310910_112926751	3300031946	Soil	MKRYLPFVIVVGVALIALGSGAMLYRAKRQQQQLRPIPEN
Ga0310909_113498372	3300031947	Soil	MKRYLPFVIVVAVALIALGSGVMLYRAKRQQQQLRPIPENQALSETTD
Ga0307470_103354913	3300032174	Hardwood Forest Soil	MKRYLPFIIVVGVALVTFGSGTMLYRAKRPQVKNIPEGQSVAA
Ga0335085_121916311	3300032770	Soil	MKRYLPFLIVAVVALATFGSGAMLYRGKLPQLKNIPEGQRLSGKSRTES
Ga0310810_110109323	3300033412	Soil	MKRYLPFVIVFGVALVTLGSGTVLYRAKLPQVRNIP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F037454

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences