Metagenome / Metatranscriptome Family F034226

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F034226
Family Type	Metagenome / Metatranscriptome
Number of Sequences	175
Average Sequence Length	62 residues
Representative Sequence	MALPPGFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGD
Number of Associated Samples	106
Number of Associated Scaffolds	175

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	8.57 %
% of genes near scaffold ends (potentially truncated)	46.29 %
% of genes from short scaffolds (< 2000 bps)	83.43 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (59.429 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere (13.143 % of family members)
Environment Ontology (ENVO)	Unclassified (78.286 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (88.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.28% β-sheet: 0.00% Coil/Unstructured: 51.72%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 175 Family Scaffolds
PF03118	RNA_pol_A_CTD	4.00
PF04392	ABC_sub_bind	3.43
PF07589	PEP-CTERM	2.86
PF03401	TctC	2.29
PF13458	Peripla_BP_6	1.71
PF14321	DUF4382	1.14
PF00196	GerE	1.14
PF13801	Metal_resist	1.14
PF03264	Cytochrom_NNT	1.14
PF13602	ADH_zinc_N_2	1.14
PF00486	Trans_reg_C	1.14
PF00211	Guanylate_cyc	1.14
PF02798	GST_N	1.14
PF08816	Ivy	1.14
PF00497	SBP_bac_3	0.57
PF11746	DUF3303	0.57
PF13489	Methyltransf_23	0.57
PF05598	DUF772	0.57
PF06742	DUF1214	0.57
PF07364	DUF1485	0.57
PF00665	rve	0.57
PF04187	Cofac_haem_bdg	0.57
PF06537	DHOR	0.57
PF08439	Peptidase_M3_N	0.57
PF08448	PAS_4	0.57
PF13424	TPR_12	0.57
PF02518	HATPase_c	0.57
PF08241	Methyltransf_11	0.57
PF07813	LTXXQ	0.57
PF03605	DcuA_DcuB	0.57
PF13895	Ig_2	0.57
PF06779	MFS_4	0.57
PF07399	Na_H_antiport_3	0.57
PF01527	HTH_Tnp_1	0.57
PF03009	GDPD	0.57
PF03466	LysR_substrate	0.57
PF07679	I-set	0.57

COG ID	Name	Functional Category	% Frequency in 175 Family Scaffolds
COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	Transcription [K]	4.00
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.43
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.29
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	2.29
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.14
COG3005	Tetraheme cytochrome c subunit NapC of nitrate or TMAO reductase	Energy production and conversion [C]	1.14
COG0584	Glycerophosphoryl diester phosphodiesterase	Lipid transport and metabolism [I]	0.57
COG1164	Oligoendopeptidase F	Amino acid transport and metabolism [E]	0.57
COG2704	Anaerobic C4-dicarboxylate transporter	Carbohydrate transport and metabolism [G]	0.57
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.57
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.57
COG3016	Putative heme-binding protein PhuW	General function prediction only [R]	0.57
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.57
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	0.57
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.57
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.57
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	0.57
COG5476	Microcystin degradation protein MlrC, contains DUF1485 domain	General function prediction only [R]	0.57

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
All Organisms	root	All Organisms	40.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
cellular organisms	root	All Organisms → cellular organisms	40.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	29.14 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	19.43 %
Armatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes	1.14 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	13.71 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1.71 %
unclassified Armatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes	1.14 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	3.43 %
Gallionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae	1.71 %
Sphaerotilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sphaerotilaceae	1.71 %
Armatimonadetes bacterium RBG_16_67_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium RBG_16_67_12	1.14 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.14 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Candidatus Nitrotoga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga	1.71 %
Sphaerotilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sphaerotilaceae	1.71 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	1.14 %
Polaromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas	1.14 %
Armatimonadetes bacterium RBG_16_67_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium RBG_16_67_12	1.14 %
Schlegelella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella	0.57 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.57 %
Burkholderiales bacterium 8X	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 8X	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Candidatus Nitrotoga arctica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → Candidatus Nitrotoga arctica	1.71 %
Sphaerotilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sphaerotilaceae	1.71 %
unclassified Polaromonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas	1.14 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1.14 %
Armatimonadetes bacterium RBG_16_67_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium RBG_16_67_12	1.14 %
Schlegelella koreensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella → Schlegelella koreensis	0.57 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.57 %
Burkholderiales bacterium 8X	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 8X	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Candidatus Nitrotoga arctica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → Candidatus Nitrotoga arctica	1.71 %
Sphaerotilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sphaerotilaceae	1.71 %
Polaromonas sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas → Polaromonas sp.	1.14 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1.14 %
Armatimonadetes bacterium RBG_16_67_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium RBG_16_67_12	1.14 %
Schlegelella koreensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella → Schlegelella koreensis	0.57 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.57 %
Burkholderiales bacterium 8X	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 8X	0.57 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886012\|MBSR1b_contig_6223281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	878	Open in IMG/M
3300004081\|Ga0063454_101928661	Not Available	520	Open in IMG/M
3300004114\|Ga0062593_101285928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	774	Open in IMG/M
3300004479\|Ga0062595_101302208	Not Available	654	Open in IMG/M
3300004643\|Ga0062591_100686351	Not Available	923	Open in IMG/M
3300005093\|Ga0062594_100148455	Not Available	1530	Open in IMG/M
3300005093\|Ga0062594_101664203	Not Available	665	Open in IMG/M
3300005166\|Ga0066674_10297466	Not Available	759	Open in IMG/M
3300005293\|Ga0065715_10193945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1399	Open in IMG/M
3300005293\|Ga0065715_10775103	Not Available	620	Open in IMG/M
3300005295\|Ga0065707_10873920	Not Available	575	Open in IMG/M
3300005327\|Ga0070658_10925798	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300005328\|Ga0070676_10366891	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300005330\|Ga0070690_100818173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 8X	723	Open in IMG/M
3300005331\|Ga0070670_100001935	All Organisms → cellular organisms → Bacteria	16952	Open in IMG/M
3300005331\|Ga0070670_100029983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4684	Open in IMG/M
3300005331\|Ga0070670_100081366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2783	Open in IMG/M
3300005331\|Ga0070670_100905015	Not Available	800	Open in IMG/M
3300005333\|Ga0070677_10010400	Not Available	3182	Open in IMG/M
3300005333\|Ga0070677_10056279	All Organisms → cellular organisms → Bacteria → Proteobacteria	1608	Open in IMG/M
3300005333\|Ga0070677_10421230	All Organisms → cellular organisms → Bacteria → Proteobacteria	708	Open in IMG/M
3300005333\|Ga0070677_10756391	Not Available	551	Open in IMG/M
3300005334\|Ga0068869_101067848	Not Available	705	Open in IMG/M
3300005338\|Ga0068868_101152606	Not Available	715	Open in IMG/M
3300005343\|Ga0070687_100035900	All Organisms → cellular organisms → Bacteria	2466	Open in IMG/M
3300005344\|Ga0070661_100084391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2347	Open in IMG/M
3300005353\|Ga0070669_100713539	Not Available	847	Open in IMG/M
3300005354\|Ga0070675_100054325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3295	Open in IMG/M
3300005354\|Ga0070675_100137557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2085	Open in IMG/M
3300005354\|Ga0070675_100556633	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300005355\|Ga0070671_100018093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5720	Open in IMG/M
3300005355\|Ga0070671_100178304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1798	Open in IMG/M
3300005355\|Ga0070671_100188528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	1748	Open in IMG/M
3300005355\|Ga0070671_100379148	Not Available	1208	Open in IMG/M
3300005355\|Ga0070671_100428499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1133	Open in IMG/M
3300005356\|Ga0070674_100431644	Not Available	1083	Open in IMG/M
3300005366\|Ga0070659_100820418	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300005367\|Ga0070667_101530231	Not Available	627	Open in IMG/M
3300005456\|Ga0070678_100026137	All Organisms → cellular organisms → Bacteria → Proteobacteria	3941	Open in IMG/M
3300005456\|Ga0070678_100043185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas → Polaromonas sp.	3209	Open in IMG/M
3300005456\|Ga0070678_100050149	All Organisms → cellular organisms → Bacteria → Proteobacteria	3017	Open in IMG/M
3300005456\|Ga0070678_100237055	Not Available	1523	Open in IMG/M
3300005456\|Ga0070678_100938776	Not Available	793	Open in IMG/M
3300005456\|Ga0070678_101055797	Not Available	749	Open in IMG/M
3300005456\|Ga0070678_101303739	All Organisms → cellular organisms → Bacteria → Proteobacteria	676	Open in IMG/M
3300005457\|Ga0070662_100200274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1584	Open in IMG/M
3300005457\|Ga0070662_101446195	Not Available	592	Open in IMG/M
3300005459\|Ga0068867_100143508	Not Available	1868	Open in IMG/M
3300005459\|Ga0068867_100159732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1777	Open in IMG/M
3300005459\|Ga0068867_100195779	Not Available	1615	Open in IMG/M
3300005539\|Ga0068853_100111282	All Organisms → cellular organisms → Bacteria → Proteobacteria	2433	Open in IMG/M
3300005543\|Ga0070672_100078695	All Organisms → cellular organisms → Bacteria	2638	Open in IMG/M
3300005543\|Ga0070672_100421500	Not Available	1146	Open in IMG/M
3300005543\|Ga0070672_100430308	All Organisms → cellular organisms → Bacteria	1135	Open in IMG/M
3300005543\|Ga0070672_100742616	Not Available	861	Open in IMG/M
3300005543\|Ga0070672_101169123	Not Available	685	Open in IMG/M
3300005547\|Ga0070693_100176922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1371	Open in IMG/M
3300005548\|Ga0070665_101180732	Not Available	776	Open in IMG/M
3300005577\|Ga0068857_100931304	Not Available	834	Open in IMG/M
3300005577\|Ga0068857_102276178	Not Available	532	Open in IMG/M
3300005616\|Ga0068852_100278788	All Organisms → cellular organisms → Bacteria	1611	Open in IMG/M
3300005616\|Ga0068852_100428627	All Organisms → cellular organisms → Bacteria	1306	Open in IMG/M
3300005616\|Ga0068852_101027544	Not Available	843	Open in IMG/M
3300005616\|Ga0068852_101398682	Not Available	722	Open in IMG/M
3300005616\|Ga0068852_102701331	Not Available	516	Open in IMG/M
3300005618\|Ga0068864_101397628	Not Available	702	Open in IMG/M
3300005618\|Ga0068864_101471961	Not Available	684	Open in IMG/M
3300005618\|Ga0068864_102381347	Not Available	536	Open in IMG/M
3300005718\|Ga0068866_11067903	Not Available	577	Open in IMG/M
3300005719\|Ga0068861_102311616	Not Available	540	Open in IMG/M
3300005834\|Ga0068851_10238710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1027	Open in IMG/M
3300005841\|Ga0068863_100108071	All Organisms → cellular organisms → Bacteria → Proteobacteria	2647	Open in IMG/M
3300005841\|Ga0068863_101679220	Not Available	645	Open in IMG/M
3300005842\|Ga0068858_100555487	Not Available	1112	Open in IMG/M
3300005842\|Ga0068858_100901051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	865	Open in IMG/M
3300005844\|Ga0068862_101765813	Not Available	627	Open in IMG/M
3300006046\|Ga0066652_100995125	Not Available	796	Open in IMG/M
3300006237\|Ga0097621_100135282	Not Available	2101	Open in IMG/M
3300006237\|Ga0097621_100222585	All Organisms → cellular organisms → Bacteria → Proteobacteria	1645	Open in IMG/M
3300006237\|Ga0097621_100431296	Not Available	1185	Open in IMG/M
3300006358\|Ga0068871_101312176	Not Available	681	Open in IMG/M
3300006581\|Ga0074048_13002538	Not Available	666	Open in IMG/M
3300006881\|Ga0068865_100360295	All Organisms → cellular organisms → Bacteria → Proteobacteria	1181	Open in IMG/M
3300009094\|Ga0111539_10249981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium RBG_16_67_12	2065	Open in IMG/M
3300009098\|Ga0105245_12352826	Not Available	586	Open in IMG/M
3300009148\|Ga0105243_10677585	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300009176\|Ga0105242_10247432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sphaerotilaceae	1605	Open in IMG/M
3300009177\|Ga0105248_10036372	All Organisms → cellular organisms → Bacteria → Proteobacteria	5506	Open in IMG/M
3300009177\|Ga0105248_10295747	All Organisms → cellular organisms → Bacteria	1823	Open in IMG/M
3300009177\|Ga0105248_11312905	Not Available	818	Open in IMG/M
3300009177\|Ga0105248_11429085	Not Available	783	Open in IMG/M
3300009553\|Ga0105249_12581275	Not Available	580	Open in IMG/M
3300010364\|Ga0134066_10450506	Not Available	503	Open in IMG/M
3300012212\|Ga0150985_113616850	Not Available	1054	Open in IMG/M
3300012508\|Ga0157315_1072963	Not Available	508	Open in IMG/M
3300012891\|Ga0157305_10077570	Not Available	775	Open in IMG/M
3300012893\|Ga0157284_10102543	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300012915\|Ga0157302_10556564	Not Available	506	Open in IMG/M
3300012961\|Ga0164302_10832274	Not Available	700	Open in IMG/M
3300012988\|Ga0164306_10798589	Not Available	760	Open in IMG/M
3300013297\|Ga0157378_10391251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1367	Open in IMG/M
3300013297\|Ga0157378_12504708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → Candidatus Nitrotoga arctica	568	Open in IMG/M
3300013306\|Ga0163162_10324145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium RBG_16_67_12	1673	Open in IMG/M
3300013308\|Ga0157375_10460073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas → Polaromonas sp.	1438	Open in IMG/M
3300013308\|Ga0157375_10509682	Not Available	1367	Open in IMG/M
3300013308\|Ga0157375_10531339	All Organisms → cellular organisms → Bacteria	1339	Open in IMG/M
3300013308\|Ga0157375_10722630	Not Available	1149	Open in IMG/M
3300014745\|Ga0157377_10613014	Not Available	778	Open in IMG/M
3300014969\|Ga0157376_10568783	All Organisms → cellular organisms → Bacteria → Proteobacteria	1124	Open in IMG/M
3300015371\|Ga0132258_13609809	Not Available	1058	Open in IMG/M
3300015374\|Ga0132255_102725285	Not Available	756	Open in IMG/M
3300015374\|Ga0132255_105765233	Not Available	524	Open in IMG/M
3300017792\|Ga0163161_10050346	All Organisms → cellular organisms → Bacteria → Proteobacteria	3014	Open in IMG/M
3300017792\|Ga0163161_10228532	All Organisms → cellular organisms → Bacteria	1443	Open in IMG/M
3300018476\|Ga0190274_10002703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	10475	Open in IMG/M
3300019356\|Ga0173481_10396818	Not Available	673	Open in IMG/M
3300024055\|Ga0247794_10042824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1217	Open in IMG/M
3300025315\|Ga0207697_10098085	Not Available	1247	Open in IMG/M
3300025321\|Ga0207656_10275028	Not Available	829	Open in IMG/M
3300025899\|Ga0207642_11128508	Not Available	507	Open in IMG/M
3300025907\|Ga0207645_10885508	Not Available	606	Open in IMG/M
3300025909\|Ga0207705_11047647	Not Available	629	Open in IMG/M
3300025919\|Ga0207657_10961937	Not Available	656	Open in IMG/M
3300025919\|Ga0207657_11139171	Not Available	595	Open in IMG/M
3300025920\|Ga0207649_10052755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	2524	Open in IMG/M
3300025920\|Ga0207649_10356831	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300025920\|Ga0207649_11134082	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300025923\|Ga0207681_10539571	Not Available	959	Open in IMG/M
3300025923\|Ga0207681_11773567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sphaerotilaceae	515	Open in IMG/M
3300025925\|Ga0207650_11774243	Not Available	522	Open in IMG/M
3300025926\|Ga0207659_10039402	All Organisms → cellular organisms → Bacteria → Proteobacteria	3295	Open in IMG/M
3300025926\|Ga0207659_11323475	Not Available	618	Open in IMG/M
3300025930\|Ga0207701_10173418	All Organisms → cellular organisms → Bacteria → Proteobacteria	1905	Open in IMG/M
3300025930\|Ga0207701_10419355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1151	Open in IMG/M
3300025930\|Ga0207701_11446093	Not Available	559	Open in IMG/M
3300025931\|Ga0207644_11377484	Not Available	592	Open in IMG/M
3300025934\|Ga0207686_10638269	Not Available	841	Open in IMG/M
3300025935\|Ga0207709_10028953	All Organisms → cellular organisms → Bacteria	3207	Open in IMG/M
3300025937\|Ga0207669_10375583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella → Schlegelella koreensis	1106	Open in IMG/M
3300025937\|Ga0207669_11072951	Not Available	679	Open in IMG/M
3300025937\|Ga0207669_11540601	Not Available	567	Open in IMG/M
3300025937\|Ga0207669_11815863	Not Available	521	Open in IMG/M
3300025939\|Ga0207665_11090523	Not Available	636	Open in IMG/M
3300025940\|Ga0207691_10053199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	3697	Open in IMG/M
3300025940\|Ga0207691_10088623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sphaerotilaceae	2775	Open in IMG/M
3300025941\|Ga0207711_10987548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	781	Open in IMG/M
3300025941\|Ga0207711_11579765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → Candidatus Nitrotoga arctica	599	Open in IMG/M
3300025942\|Ga0207689_10214938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1589	Open in IMG/M
3300025945\|Ga0207679_10195278	Not Available	1686	Open in IMG/M
3300025960\|Ga0207651_10098169	Not Available	2165	Open in IMG/M
3300025960\|Ga0207651_10815852	Not Available	828	Open in IMG/M
3300025960\|Ga0207651_11182328	Not Available	686	Open in IMG/M
3300025972\|Ga0207668_11376935	Not Available	636	Open in IMG/M
3300025981\|Ga0207640_11439062	Not Available	618	Open in IMG/M
3300025986\|Ga0207658_11833330	Not Available	553	Open in IMG/M
3300026067\|Ga0207678_10878217	Not Available	793	Open in IMG/M
3300026067\|Ga0207678_11226406	Not Available	664	Open in IMG/M
3300026088\|Ga0207641_10695307	Not Available	1001	Open in IMG/M
3300026088\|Ga0207641_11642530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → Candidatus Nitrotoga arctica	645	Open in IMG/M
3300026089\|Ga0207648_10029298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4882	Open in IMG/M
3300026089\|Ga0207648_11126446	Not Available	736	Open in IMG/M
3300026089\|Ga0207648_12187870	Not Available	514	Open in IMG/M
3300026095\|Ga0207676_10244451	Not Available	1612	Open in IMG/M
3300026095\|Ga0207676_11731486	Not Available	623	Open in IMG/M
3300026121\|Ga0207683_10015945	Not Available	6396	Open in IMG/M
3300026121\|Ga0207683_11321765	All Organisms → cellular organisms → Bacteria → Proteobacteria	667	Open in IMG/M
3300026142\|Ga0207698_10838422	Not Available	924	Open in IMG/M
3300026142\|Ga0207698_12535211	Not Available	523	Open in IMG/M
3300027907\|Ga0207428_11160248	Not Available	538	Open in IMG/M
3300028381\|Ga0268264_11327140	Not Available	730	Open in IMG/M
3300028381\|Ga0268264_12431707	Not Available	530	Open in IMG/M
3300028592\|Ga0247822_10827036	Not Available	756	Open in IMG/M
3300031366\|Ga0307506_10422260	Not Available	550	Open in IMG/M
3300031939\|Ga0308174_11479015	Not Available	582	Open in IMG/M
3300032074\|Ga0308173_10050124	Not Available	3036	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	82.86%
Environmental	Environmental	17.14%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	82.86%
Terrestrial	Environmental → Terrestrial	17.14%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	45.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	34.86%
Soil	Environmental → Terrestrial → Soil	17.14%
Roots	Host-Associated → Plants → Roots	2.29%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	33.14%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	25.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	14.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.57%
Soil	Host-Associated → Plants → Rhizoplane → Soil	5.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.00%
Loam	Environmental → Terrestrial → Soil → Loam	2.86%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.29%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	33.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	25.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.29%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	5.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.43%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.29%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.29%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.71%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.57%

Habitat	Taxonomy	Distribution
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	13.14%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	12.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	8.57%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	8.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	7.43%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	5.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.29%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.14%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.14%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.14%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.57%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.57%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.57%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.57%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.57%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.57%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MBSR1b_0186.00001500	2162886012	Miscanthus Rhizosphere	MIPPPDSDPTAHRVHERALRPPEPSNWRRHGPYLRALAVAMVLTVAAASAGMLMA
Ga0063454_1019286612	3300004081	Soil	LKVQFMAPPPGSDSTARRVHDRVSSAPEPSNWRRHGPYLRTLAVAIVLTVAAASAGMLMALMGD*
Ga0062593_1012859281	3300004114	Soil	MALPPGFDPTAHRVHDRVSPPPERSNWRRHGPYLRTLAVAIVLTTAAASAGMLMALMGD*
Ga0062595_1013022082	3300004479	Soil	MALPPDFDPTAHRVHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0062591_1006863513	3300004643	Soil	VVHDIPARMVGGRATTDVQPMALPPGFDPNAQHRVHDRVPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD*
Ga0062594_1001484552	3300005093	Soil	MAPPPGFDPTAHRAHGRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0062594_1016642032	3300005093	Soil	MALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGLLMALMGD*
Ga0066674_102974661	3300005166	Soil	MVGSRATTEVQSMALPPGSDPTGAHRVHHRVSPSPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMPD*
Ga0065715_101939452	3300005293	Miscanthus Rhizosphere	MIPPPDSDPTAHRVHERALRPPEPSNWRRHGPYLRALAVAMVLTVAAASAGMLMALLGD*
Ga0065715_107751032	3300005293	Miscanthus Rhizosphere	MALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALM
Ga0065707_108739202	3300005295	Switchgrass Rhizosphere	MALPPGFDPTSHRVHDRASRPPEPSDWRRHGPHLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0070658_109257981	3300005327	Corn Rhizosphere	MALPPDSNSTAHRAHGRVSPPPAPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070676_103668911	3300005328	Miscanthus Rhizosphere	MALPPDSNSTAHRAHGRVSPPPAPSNWRWHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070690_1008181732	3300005330	Switchgrass Rhizosphere	MHVPAHMVDRRPTTEVHLMALPPGFDRTGHPVHDRVSRPLERSNWRRHGPYLRTLAVALVLTAAAASAGMLMSLMGD*
Ga0070670_1000019355	3300005331	Switchgrass Rhizosphere	MALPPGFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGLLMALMGD*
Ga0070670_1000299833	3300005331	Switchgrass Rhizosphere	MVVGRATTQVLPVSPPPRFDPAEHRVHDRVSRPPKPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070670_1000813662	3300005331	Switchgrass Rhizosphere	VALPPGSNPSKHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070670_1009050151	3300005331	Switchgrass Rhizosphere	MAPPPGFDPNAHRVHDRVSRSPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALLGD*
Ga0070677_100104005	3300005333	Miscanthus Rhizosphere	MAPPPGFDPTTHRVHGRASRPPEPSNWRRHWPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070677_100562793	3300005333	Miscanthus Rhizosphere	HRVHDRASRPPEPSDWRRHGPHLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0070677_104212301	3300005333	Miscanthus Rhizosphere	MALPPGFDPTAHRVHGRVSRPPERSNWRRHGPHLRTLAAAVVLTAAAASAG
Ga0070677_107563911	3300005333	Miscanthus Rhizosphere	NSTAHRAHGRVSPPPAPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068869_1010678482	3300005334	Miscanthus Rhizosphere	MASPPDFDPTRHRVHEHAVRPLERSQWRRHGPYLRTLAVAMVLTVAAASAGMLMALMGD*
Ga0068868_1011526062	3300005338	Miscanthus Rhizosphere	MVGGRATTEVQPMALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD*
Ga0070687_1000359004	3300005343	Switchgrass Rhizosphere	FDPTSHRVHDRASRPPEPSDWRRHGPHLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0070661_1000843915	3300005344	Corn Rhizosphere	MALPPRLDPTAHRVPDRVSRPPRASPWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070669_1007135392	3300005353	Switchgrass Rhizosphere	PMALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD*
Ga0070675_1000543251	3300005354	Miscanthus Rhizosphere	VTLPPRFDPTAHRVHDRVSRPPEHSNWGRHGPYMRTLAVALVLTAAAASAGMLMALMGD*
Ga0070675_1001375574	3300005354	Miscanthus Rhizosphere	MVAGRATTQVLPVSPPPRFDPAEHRVHDRVSRPSEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070675_1005566333	3300005354	Miscanthus Rhizosphere	MAPPPVFDPSAHRARHRAAQPPETANRRRHGPYLRTLAVAVVLTAAAASAGLLMALIGD*
Ga0070671_1000180936	3300005355	Switchgrass Rhizosphere	MALPPGSDPTAAHRVHDRVSPPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0070671_1001783042	3300005355	Switchgrass Rhizosphere	MAPPPVFDPSAHRARHRAAQPPETANRRRHGPYLRTLAVAVVLTAAAASAGLLMALMGD*
Ga0070671_1001885283	3300005355	Switchgrass Rhizosphere	MALPPDFHPTAHRVHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLM
Ga0070671_1003791482	3300005355	Switchgrass Rhizosphere	MALPPGFDPTAHRVHGRVSRPPERSNWRRHGPHLRTLAAAVVLTAAAASAGILMALMGD*
Ga0070671_1004284994	3300005355	Switchgrass Rhizosphere	MALPPGFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0070674_1004316442	3300005356	Miscanthus Rhizosphere	MVGSRATTEVHPMALPPGFDPTAHRVHDRVSRPPEPSSWRRHGPYLRTLAVAIVLTAAAASAGMLMTLM
Ga0070659_1008204183	3300005366	Corn Rhizosphere	MALPPGFDPNAHRAHDRASRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070667_1015302311	3300005367	Switchgrass Rhizosphere	MVGSRTTTEVQSMALPPGFDPTAHRVHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALLGD*
Ga0070678_1000261376	3300005456	Miscanthus Rhizosphere	ATTEVQSMALPPGFDPTAHRVHDRVSPPPERSNWRRHGPYLRTLAVAIVLTTAAASAGMLMALMGD*
Ga0070678_1000431852	3300005456	Miscanthus Rhizosphere	MAPPPGFDPTTHRVHGRASRPPEPSNWRRHWPYLRTLAVALVLTAAAASAGMLMALMGA*
Ga0070678_1000501493	3300005456	Miscanthus Rhizosphere	MALPPGFDPTAHRVHDRVSRPPEPSSWRRHGPYLRTLAVAIVLTAAAASAGMLMTLMGD*
Ga0070678_1002370552	3300005456	Miscanthus Rhizosphere	VTLPPRFDPTAHRVHDRVSRPPEHSNWGRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070678_1009387762	3300005456	Miscanthus Rhizosphere	PPDFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGLLMALMGD*
Ga0070678_1010557972	3300005456	Miscanthus Rhizosphere	MVDRRPTTEVHLMALPPGFDRTRHPVHDRVSRPLERSNWRRHGPYLRTLAVALVLTAAAASAGMLMSLMGD*
Ga0070678_1013037392	3300005456	Miscanthus Rhizosphere	AHRVHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALLGD*
Ga0070662_1002002742	3300005457	Corn Rhizosphere	VLPVSPPPRFDPAEHRVHDRVSRPSEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070662_1014461951	3300005457	Corn Rhizosphere	MALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTTAAASAWMLMALMGD*
Ga0068867_1001435084	3300005459	Miscanthus Rhizosphere	MALPPGFDPTAHRVHDRVSRPPERSSWRRHGPYLRTLAVAIVLTAAAASAGMLMTLMGD*
Ga0068867_1001597322	3300005459	Miscanthus Rhizosphere	MAPPPGFDPTAHRVLDRASRAPRPSNWRRHGPYFRTLAVAIVLTAAAASTGMLMALGD*
Ga0068867_1001957791	3300005459	Miscanthus Rhizosphere	MVGGRATTEVHSMALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAA
Ga0068853_1001112821	3300005539	Corn Rhizosphere	MIPPPDSDPTAHRVHERALRPPEPSNWRRHGPYLRALAVAMVLTVAAA
Ga0070672_1000786954	3300005543	Miscanthus Rhizosphere	PPGFDPTSHRVHDRASRPPEPSDWRRHGPHLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0070672_1004215002	3300005543	Miscanthus Rhizosphere	VTLPPRFDPIAHRVHDRVSRPPEHSNWGRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070672_1004303081	3300005543	Miscanthus Rhizosphere	RMVVGRATTQVLPVSPPPRFDPAEHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070672_1007426161	3300005543	Miscanthus Rhizosphere	MALPPDFDRTAHRVHDRVSRQPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070672_1011691231	3300005543	Miscanthus Rhizosphere	MALPPGFDPNAQHRVHDRVPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD
Ga0070693_1001769222	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MALPPGFDPNAHRAHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0070665_1011807321	3300005548	Switchgrass Rhizosphere	MIPPPDSDPTAHRVHERALRPPEPSNWRRHGPYLRALAVAMVLTVAAASAGMLM
Ga0068857_1009313041	3300005577	Corn Rhizosphere	AHRVHERALRPPEPSNWRRHGPYLRALAVAMVLTVAAASAGMLMALLGD*
Ga0068857_1022761782	3300005577	Corn Rhizosphere	DPTAHRVHDRASPPPEPSNWRRHGPHLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0068852_1002787883	3300005616	Corn Rhizosphere	SRATTEVQSMALPPDSNSTAHRAHGRVSPPPAPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068852_1004286271	3300005616	Corn Rhizosphere	GTIAAAPALMAPPPGFDPTAHRVRDRALRPPEPSKWRRHGPHLRTLAVAIVLTAAAASAGMLIALMGA*
Ga0068852_1010275441	3300005616	Corn Rhizosphere	MPRVWSAVEKTTEVHPMALPPRLDPTAHRVPDRVSRPPRASPWRRHGPYLRTLAVALVLTAAAASAGML
Ga0068852_1013986821	3300005616	Corn Rhizosphere	AYGRSRATTKGHPVTLPPRFDPTAHRVHDRVSRPPEHSNWGRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068852_1027013312	3300005616	Corn Rhizosphere	VLPVSPPPRFDPAEHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068864_1013976282	3300005618	Switchgrass Rhizosphere	MALPPGFDPTAHRAHDRVSRPPEPSSWRRHGPYLRTLAVAIVLTAAAASAGMLMTLMGD*
Ga0068864_1014719611	3300005618	Switchgrass Rhizosphere	MVGSHARTEVHPMALPPDFDPTMHRVRDRMSRPPEPSHWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068864_1023813471	3300005618	Switchgrass Rhizosphere	PARMVGSRATTEVQSMALPPGFDPNAHRVHDRVSRPPEHSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068866_110679032	3300005718	Miscanthus Rhizosphere	MALPPGFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGVLMALMED*
Ga0068861_1023116161	3300005719	Switchgrass Rhizosphere	ALPPGFDPNAQHRVHGRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD*
Ga0068851_102387101	3300005834	Corn Rhizosphere	MIPPPDSDPTAHRVHERALRPPEPSNWRRHGPYLRALAVAMVLTVAAASAG
Ga0068863_1001080712	3300005841	Switchgrass Rhizosphere	MALPPGFDPNAHRVHDRVSRPPEHSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068863_1016792202	3300005841	Switchgrass Rhizosphere	MPSRMVGKSPNEVISVALPPGSNPSKHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068858_1005554871	3300005842	Switchgrass Rhizosphere	MALPPGFDPTANREHDRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0068858_1009010512	3300005842	Switchgrass Rhizosphere	MALPPGFDPNAHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068862_1017658132	3300005844	Switchgrass Rhizosphere	MALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0066652_1009951251	3300006046	Soil	MALPPGFDPTAHRVHGRVSPPPEPSNWRRHGPYLRTLAVALVLTVAAASAGMLMALMGD*
Ga0097621_1001352822	3300006237	Miscanthus Rhizosphere	MALPPGFDPTAHRVHDRVSRPPERSNWRRHGPHLRTLAAALVLTAAAASAGILMALMGD*
Ga0097621_1002225852	3300006237	Miscanthus Rhizosphere	MVGSRATTEVHPMALPPGFDPTPQGVHDRVSHPPEPSNWRRHGPYLRTLAVALVLTAAAASAGILLALMGD*
Ga0097621_1004312961	3300006237	Miscanthus Rhizosphere	RATTEVQSMALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD*
Ga0068871_1013121762	3300006358	Miscanthus Rhizosphere	MALPPDFDPTAHRVHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALLGD*
Ga0074048_130025382	3300006581	Soil	MALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0068865_1003602952	3300006881	Miscanthus Rhizosphere	VVHDIPARMVGGRATTEVQPMALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD*
Ga0111539_102499811	3300009094	Populus Rhizosphere	PMALPPGFDPKHDRASRPPEPSNWRRHGPYLRTLAVAVVLTAAAASAWMLMALMGD*
Ga0105245_123528262	3300009098	Miscanthus Rhizosphere	EVHPMALPPGFDPTAHRVHDRVSRPPEPSSWRRHGPYLRTLAVAIVLTAAAASAGMLMTLMGD*
Ga0105243_106775851	3300009148	Miscanthus Rhizosphere	PGFDPTAHPVHDRASRSPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGD*
Ga0105242_102474323	3300009176	Miscanthus Rhizosphere	MAPPPGFDPTAHRVLDRASRAPGPSNWRRHGPYLRTLAVAIVLTAAAASTGMLMALGD*
Ga0105248_100363723	3300009177	Switchgrass Rhizosphere	MVGSFATTEVQSMALPPGSDPTAAHRVHDRVSPPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0105248_102957472	3300009177	Switchgrass Rhizosphere	MAPPPGFDPDAQRAHEGKLRPPVPSTWRRHAPYLRTLAVVMVLTVAAASAGMLMALMGD*
Ga0105248_113129051	3300009177	Switchgrass Rhizosphere	MGPPPGFDPTAHPVHDRASRSPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGTERSGS
Ga0105248_114290852	3300009177	Switchgrass Rhizosphere	GLAPQFKMGRPAAYGGRATTEVHSMALPPGFDPNAHRVHDRVSRPPEHSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0105249_125812753	3300009553	Switchgrass Rhizosphere	RAMVRSRATTEVHPMALPPDFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGVLMALMED*
Ga0134066_104505061	3300010364	Grasslands Soil	SMALRPGFDPTEHRAHDRTSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAARLTALMGD
Ga0150985_1136168501	3300012212	Avena Fatua Rhizosphere	MALPPRLDPTSHRVPDRVSGPPRASPWRRHGPYLRTLAVALVLTAAAASAGMLMALMGS
Ga0157315_10729631	3300012508	Arabidopsis Rhizosphere	VALPPGFDPTAHRVRDRAARPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0157305_100775701	3300012891	Soil	MVGGRATTEVHPMALPPGFDPNAHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0157284_101025431	3300012893	Soil	ARMVGGRATTEVHPMALPPGFDPNAHRVHERASRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0157302_105565642	3300012915	Soil	VHPMALPPGFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGLLMALMGD*
Ga0164302_108322741	3300012961	Soil	MALPPGFDPTPQGVHDRVSHPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0164306_107985892	3300012988	Soil	MAMPPGFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVAVVLTAAAASAGMLMALMGD*
Ga0157378_103912511	3300013297	Miscanthus Rhizosphere	MALPPDFDPTAHRVHDRVSRPPERSNWRGHGPYLRTLAVALVLSAAAASAGMLMALLGD*
Ga0157378_125047081	3300013297	Miscanthus Rhizosphere	LPPGFDPTAHRVHGRVSRPPARSNWRRHGPHLRTLAAAVVLTAAAASAGMLMALLGD*
Ga0163162_103241453	3300013306	Switchgrass Rhizosphere	MVGGRATTEVHPMALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTTAAASAWMLMALMGD*
Ga0157375_104600733	3300013308	Miscanthus Rhizosphere	MAPPPGFDPTAHRAHGRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLIALM
Ga0157375_105096821	3300013308	Miscanthus Rhizosphere	PMALPPGFDPNAHRVHDRVSRPPEHSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0157375_105313391	3300013308	Miscanthus Rhizosphere	MGPPPGFDPTAHPVHDRASRSPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGTERSGSVT
Ga0157375_107226301	3300013308	Miscanthus Rhizosphere	VVHDIPARMVGGRATTDVQPMALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMAL
Ga0157377_106130142	3300014745	Miscanthus Rhizosphere	MVGSFATTEVQSMALPPGSVPTAAHRVHDRVSPPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0157376_105687832	3300014969	Miscanthus Rhizosphere	MVGGRTTTEVQSMALPPGFDPTAHRVHDRVSRPPERSNWRRHGPHLRTLAAALVLTAAAASAGMLMALLGD*
Ga0132258_136098092	3300015371	Arabidopsis Rhizosphere	MALPPGFDPTAHRVHDRAAHPPELSKWRRHGPYLRTLAVAIVLRRGRLCGMLMALTGD*
Ga0132255_1027252853	3300015374	Arabidopsis Rhizosphere	MVGGRATTDVQPMALPPGFDPNAQHRVHDRVPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD
Ga0132255_1057652331	3300015374	Arabidopsis Rhizosphere	MALPPGFAPNAHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD*
Ga0163161_100503463	3300017792	Switchgrass Rhizosphere	MALPPGFDPTAHRVHDRVSRPPERSNWRRHGPHLRTLAAAVVLTAAAASAGILMALMGD
Ga0163161_102285324	3300017792	Switchgrass Rhizosphere	MASPPDFDPTRHRVHEHAVRPLERSQWRRHGPYLRTLAVAMVLTVAAASAGMLM
Ga0190274_100027033	3300018476	Soil	MVGSRATTEVHPMALPPDSDPTAHRVHDRASRLPEPSNWRLHGPYLRTLAVAIVLTAATASAGMLMALMGD
Ga0173481_103968182	3300019356	Soil	VVHEVPARMVGGRATTEVQSMALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAAAIVLTTAAASAWMLMALMGD
Ga0247794_100428242	3300024055	Soil	MALPPDFDPTAHRVHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGLLMALMGD
Ga0207697_100980851	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTTAAASAWMLMALMGD
Ga0207656_102750282	3300025321	Corn Rhizosphere	MALPPDFDRTAHRVHDRVSRQPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207642_111285081	3300025899	Miscanthus Rhizosphere	PMALPPDFDPTAHRVHDRASRPPETSNWRRHGPYLRTLAVAIVLTAAAASAGVLMALMED
Ga0207645_108855082	3300025907	Miscanthus Rhizosphere	ALSSLMASPPDFDPTRHRVHEHAVRPLERSQWRRHGPYLRTLAVAMVLTVAAASAGMLMALMGD
Ga0207705_110476471	3300025909	Corn Rhizosphere	SVALPPGSNPSKHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207657_109619372	3300025919	Corn Rhizosphere	MVVGRATTQVLPVSPPPRFDPAEHRVHDRVSRPPKPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207657_111391711	3300025919	Corn Rhizosphere	MALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAVAVVLTAAAASAGMLMALMGD
Ga0207649_100527552	3300025920	Corn Rhizosphere	MALPPGFDPNAHRAHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207649_103568312	3300025920	Corn Rhizosphere	MAPPPVFDPSAHRARHRAAQPPETANRRRHGPYLRTLAVAVVLTAAAASAGLLMALIGD
Ga0207649_111340821	3300025920	Corn Rhizosphere	HRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207681_105395711	3300025923	Switchgrass Rhizosphere	RATTEVQPMALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD
Ga0207681_117735672	3300025923	Switchgrass Rhizosphere	MAPPPGFDPTAHRVLDRASRAPGPSNWRRHGPYLRTLAVAIVLTAAAASTGMLMSLGD
Ga0207650_117742432	3300025925	Switchgrass Rhizosphere	EVHPMALPPGFDPTAHRAHDRVSRPPEPSSWRRHGPYLRTLAVALVLTAAAASAGMLMALLGD
Ga0207659_100394021	3300025926	Miscanthus Rhizosphere	SAPMALPPGFDPTSHRVHDRASRPPEPSDWRRHGPHLRTLAVAIVLTAAAASAGMLMALMGD
Ga0207659_113234751	3300025926	Miscanthus Rhizosphere	MALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD
Ga0207701_101734182	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MALPPGFDPNAHRVHDRASRPPEPSNWRRHGPYLRTLAAAIVLTTAAASAWMLMALMGD
Ga0207701_104193554	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMG
Ga0207701_114460931	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	ARMVAGRATTQVLPVSPPPRFDPAEHRVHDRVSRPSEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207644_113774841	3300025931	Switchgrass Rhizosphere	PPPGFDPTAHRVRDRALRPPEPSKWRRHGPHLRTLAVAIVLTAAAASAGMLIALMGA
Ga0207686_106382692	3300025934	Miscanthus Rhizosphere	IHILARMVGGHATTEVHPMALPPGFDPTAHRVHDRASRPPEPSDWRRHGPHLRTLAVAIVLTAAAASAGMLMALMGD
Ga0207709_100289532	3300025935	Miscanthus Rhizosphere	MALPPGFDPTSHRVHDRASRPPEPSDWRRHGPHLRTLAVAIVLTAAAASAGMLMALMGD
Ga0207669_103755831	3300025937	Miscanthus Rhizosphere	MALPPDFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGVLMALMED
Ga0207669_110729511	3300025937	Miscanthus Rhizosphere	VALPPGSNPSKHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207669_115406011	3300025937	Miscanthus Rhizosphere	MVGSRATTEVHPMALPPGFDPTAHRVHDRVSRPPEPSSWRRHGPYLRTLAVAIVLTAAAASAGMLMTLMGD
Ga0207669_118158632	3300025937	Miscanthus Rhizosphere	RPTTEVHLMALPPGFDRTGHPVHDRVSRPLERSNWRRHGPYLRTLAVALVLTAAAASAGMLMSLMGD
Ga0207665_110905231	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MALPPGLDPTAHRVHDRVSPPPEPSNWRRRGPYLRTLAVALVLTTAAASAGMLMALMGD
Ga0207691_100531991	3300025940	Miscanthus Rhizosphere	LVHAHAARMVAGRATTQVLPVSPPPRFDPAEHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207691_100886231	3300025940	Miscanthus Rhizosphere	MAPPPGFDPTAHRVLDRASRAPGPSNWRRHGPYLRTLAVAIVLTAAAASTGMLMALGD
Ga0207711_109875482	3300025941	Switchgrass Rhizosphere	MALPPDFDPTAHRVHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALLGD
Ga0207711_115797651	3300025941	Switchgrass Rhizosphere	SHNEVQSMALPPGFDPTAHRVHDRVSRPPERSNWRRHGPHLRTLAAALVLTAAAASAGMLMALMGD
Ga0207689_102149381	3300025942	Miscanthus Rhizosphere	AHRVHDRVSPPPERSNWRRHGPYLRTLAVAIVLTTAAASAGMLMALMGD
Ga0207679_101952782	3300025945	Corn Rhizosphere	MALPPGFDPNAHRAHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALLGD
Ga0207651_100981693	3300025960	Switchgrass Rhizosphere	MAPPPDFDPAHRKHRRTARPPEPSSWRRHGSHLRTLAVAVVLTAAAASAGLLMALMGD
Ga0207651_108158522	3300025960	Switchgrass Rhizosphere	PMALPPDFDRTAHRVHDRVSRQPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207651_111823282	3300025960	Switchgrass Rhizosphere	VTLPPRFDPTAHRVHDRVSRPPEHSNWGRHGPYMRTLAVALVLTAAAASAGMLMALMGD
Ga0207668_113769352	3300025972	Switchgrass Rhizosphere	MALPPGFDPTAHRVHDRVSPPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207640_114390621	3300025981	Corn Rhizosphere	KHRVHDRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207658_118333303	3300025986	Switchgrass Rhizosphere	SAPMALPPGFDPNAQHRVHDRAPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD
Ga0207678_108782171	3300026067	Corn Rhizosphere	SDPTAHRVHERALRPPEPSNWRRHGPYLRALAVAMVLTVAAASAGMLMALLGD
Ga0207678_112264062	3300026067	Corn Rhizosphere	PGFDPTTHRVHGRASRPPEPSNWRRHWPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207641_106953071	3300026088	Switchgrass Rhizosphere	MALPPGFDPTAHRVHDRASRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGLLMALMG
Ga0207641_116425301	3300026088	Switchgrass Rhizosphere	DGRAKTDAHPMTLPPGFDRTGHRVHDRVSRRPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALLGD
Ga0207648_100292981	3300026089	Miscanthus Rhizosphere	PWHDSCCPAPMAPPPGFDPTAHRAHGRASRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGD
Ga0207648_111264462	3300026089	Miscanthus Rhizosphere	SPPPRFDPAEHRVHDRVSRPSEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207648_121878701	3300026089	Miscanthus Rhizosphere	ATTQVLPVSPPPRFDPAEHRVHDRVSRPPKPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207676_102444511	3300026095	Switchgrass Rhizosphere	MAPPPVFDPSAHRARHRAAQPPETANRRRHGPYLRTLAVAVVLTAAAASAGLLMASMGD
Ga0207676_117314861	3300026095	Switchgrass Rhizosphere	MVGSHARTEVHPMALPPDFDPTMHRVRDRMSRPPEPSHWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207683_100159451	3300026121	Miscanthus Rhizosphere	TDVQPMALPPGFDPNAQHRVHDRVPRPPEPSNWRRHGPHLRTLAVAVVLTAAAASAGLLMALMGD
Ga0207683_113217652	3300026121	Miscanthus Rhizosphere	ALPPDFDPTAHRVHDRVSRPPERSNWRRHGPYLRTLAVALVLTAAAASAGMLMALLGD
Ga0207698_108384222	3300026142	Corn Rhizosphere	GTIAAAPALMAPPPGFDPTAHRVRDRALRPPEPSKWRRHGPHLRTLAVAIVLTAAAASAGMLIALMGA
Ga0207698_125352111	3300026142	Corn Rhizosphere	RFDPIAHRVHDRVSRPPEHSNWGRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0207428_111602481	3300027907	Populus Rhizosphere	YSGTIDAAPSPMIPPPDSDPTAHRVHERALRPPEPSNWRRHGPYLRALAVAMVLTVAAASAGMLMALLGD
Ga0268264_113271402	3300028381	Switchgrass Rhizosphere	MALPPGFDPTAHRVHDRVSPPPERSNWRRHGPYLRTLAVAIVLTTAAASAGMLMALMGD
Ga0268264_124317072	3300028381	Switchgrass Rhizosphere	MVGSHARTEVHPMALPPDFDPTMHRVRDRMSRPPEPSHWRRHGPYLRTLAVA
Ga0247822_108270362	3300028592	Soil	MALPPGFDPTEHQVHDRGSRPPEPSNWRRHGPYLRTLAVAIVLTAAAASAGMLMALMGD
Ga0307506_104222601	3300031366	Soil	MIEVHSMALPPGFDPTEHRARGRVSRPPEPSNWRRHGPYLRTLAVALVLTAAAASAGMLMALMGD
Ga0308174_114790151	3300031939	Soil	MALPPGFDPTAHRVHDRASRPPEHSNWRRHGPQLRSLAVAIVLTAVFASAGVLMALMGD
Ga0308173_100501243	3300032074	Soil	LEVQFMGLPPGFDPAAHGVHDRLPSAPEPSKWRRHGPYLRTLAVALVLTAAAASAGLLMALMGD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F034226

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences