Metagenome / Metatranscriptome Family F033878

Basic Information
Family ID	F033878
Family Type	Metagenome / Metatranscriptome
Number of Sequences	176
Average Sequence Length	51 residues
Representative Sequence	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLIIFW
Number of Associated Samples	147
Number of Associated Scaffolds	176

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	1.70 %
% of genes from short scaffolds (< 2000 bps)	1.14 %
Associated GOLD sequencing projects	137
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Most Common Taxonomy
Group	Unclassified (98.295 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (21.023 % of family members)
Environment Ontology (ENVO)	Unclassified (32.955 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.636 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.50% β-sheet: 0.00% Coil/Unstructured: 47.50%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 176 Family Scaffolds
PF00482	T2SSF	90.91
PF00437	T2SSE	7.39
PF00072	Response_reg	0.57
PF05157	T2SSE_N	0.57
PF02518	HATPase_c	0.57

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.30 %
All Organisms	root	All Organisms	1.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.30 %
cellular organisms	root	All Organisms → cellular organisms	1.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.30 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.30 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.57 %

Scaffold	Taxonomy	Length	IMG/M Link
3300009029\|Ga0066793_10768227	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300010321\|Ga0134067_10002057	All Organisms → cellular organisms → Bacteria → Acidobacteria	4849	Open in IMG/M
3300027660\|Ga0209736_1186260	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.43%
Host-Associated	Host-Associated	0.57%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.16%
Aquatic	Environmental → Aquatic	2.27%
Plants	Host-Associated → Plants	0.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.16%
Freshwater	Environmental → Aquatic → Freshwater	1.70%
Sediment	Environmental → Aquatic → Sediment	0.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.57%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.80%
Loam	Environmental → Terrestrial → Soil → Loam	10.80%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.14%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.57%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.57%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	23.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.80%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.14%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.57%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.57%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.57%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	21.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	16.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	9.66%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.66%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.39%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.70%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.14%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.14%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.57%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.57%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.57%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.57%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.57%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.57%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.57%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004101	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF228 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004102	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF212 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004136	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF214 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010098	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010858	Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012224	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012374	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012377	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012381	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012384	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012391	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012392	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012404	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012410	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021855	Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_18 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022506	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022523	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026371	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-B	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027061	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027096	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031000	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral C1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031018	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1068609686	3300000955	Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYVGNFG
JGI12635J15846_106099822	3300001593	Forest Soil	MDQSFATREWLEWLTRVRLLTITLILTVGVVWPQYVPGSSTNRFFLPLIIFWITLGILHLILLRSL
JGI12053J15887_101651972	3300001661	Forest Soil	MDKSFATREWLDWLTRVRLLTITLTLTIGVVWPQYIPGFSTNRFFLPLIIFWIT
JGI25381J37097_10677861	3300002557	Grasslands Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSTNRFFLPLIIFWITLGILH
JGI25384J37096_100948082	3300002561	Grasslands Soil	MDKSFATGQWLDWLTRVRLLTITLILTIGVVWPQYVPGFSA
JGI25386J43895_101889211	3300002912	Grasslands Soil	MDKSFATGQWLDWLTRVRLLTITLILTIGVVWPQYVPGFSANRFFLPL
JGI25617J43924_100063214	3300002914	Grasslands Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGLNTNRFFLPLIIFW
JGI25616J43925_101123162	3300002917	Grasslands Soil	MDKSFATGQWLDWLTRVRLLTITLILTIGVVWPQYVPGFSTNRFFL
JGI25616J43925_103350701	3300002917	Grasslands Soil	MDKSFATGQWLDWLTRVRLLTITLILTVGVVWPQYVPGFSTNHFFLP
Ga0058896_13792411	3300004101	Forest Soil	MDKSFATQEWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRF
Ga0058896_14387422	3300004101	Forest Soil	MDQSFATRAWLEWLAWVRLLTITLILTVGVVWPQYVPGFSTNRFFL
Ga0058888_14628342	3300004102	Forest Soil	MDQSFATRAWLEWLAWVRLLTITLILTVGVVWPQYVPGFS
Ga0058889_14130291	3300004136	Forest Soil	MDQSTTTREWLGWLTRVRLLTILLILGVGLLWPQYVPASST
Ga0058897_111455392	3300004139	Forest Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGYSTNRFFLPLIIFWITLGILH
Ga0058897_111794251	3300004139	Forest Soil	MDKSFATREWLDWLTRVRLLTITLILSVGVVWPQYIPGFSTNRF
Ga0066674_100372651	3300005166	Soil	MDQSFATKAWLEWLARVRLLTITLILTVGVVWPQYVPGLSPN
Ga0066672_102421981	3300005167	Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFS
Ga0066679_101409541	3300005176	Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLP
Ga0066679_101716692	3300005176	Soil	MPGLWRGRAMDKSFATGEWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPL
Ga0066685_100049501	3300005180	Soil	MDKSFATGQWLDWLTRVRLLTITLILTIGVVWPQYVPGFSANRFFLPLIIFWITLGILHL
Ga0066388_1078253151	3300005332	Tropical Forest Soil	MMDQSFATKAWLEWLARVRLLSITLILTVGVVWPQYVPGLSSNRFFLPLIIFWITLGILH
Ga0066689_100406881	3300005447	Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLIVLWITLGILH
Ga0066681_101500781	3300005451	Soil	MDQSFATRAWLEWLTRVRLLTVTLILTVGFVWPQYVPGLGTNRFFLPLIIFWITLGILHLILLR
Ga0066697_100039995	3300005540	Soil	MDKSFATREWLEWLTRVRLLTITLILTIGVVWPQYIPGFSSNRFFL
Ga0066701_100674913	3300005552	Soil	MDQSFATRAWLEWLTRVRLLTITLILTVGVVWPQYVPGSSTNRFFLPLIIFWITL
Ga0066698_100946733	3300005558	Soil	MDQSFATREWLEWLTRVRLLTITLILTIGVVWPQYVPGLGTNRFFLPLIIFWLTLGI
Ga0066703_102153171	3300005568	Soil	MPGLWRGRAMDKSFATGEWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLIVF
Ga0066691_100006759	3300005586	Soil	MDKSFATREWLEWLTRVRLLTITLILTIGVVWPQYIPGFSSNRFF
Ga0066691_103697021	3300005586	Soil	MDKSFATGQWLDWLTRVRLLTITLILTVGVVWPQYVPGYSTNRFFLPLIIFWITL
Ga0075024_1004730561	3300006047	Watersheds	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSTNRFFLPLIIFWITIGILH
Ga0070765_1009525202	3300006176	Soil	MDQSTTTREWLGWLTRVRLLTILLILGVGLIWPQYVPAS
Ga0066653_100576691	3300006791	Soil	MDQSFATRAWLEWLTRVRLLTVTLILTVGFVWPQYIPGLGTNRFFLPLI
Ga0066665_100706071	3300006796	Soil	MDQSFATREWLEWLTRVRLLTITLILTIGAVWPQYVPGLGTNRFFLPLIIFWLTLVILHLIL
Ga0075425_1010538202	3300006854	Populus Rhizosphere	MDQSFATRAWLEWLARVRLLTITLILTVGVVWPQYVPGLSTN
Ga0099791_100264683	3300007255	Vadose Zone Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYVGNLGANRFFLPLFIFWITLGILHLILLR
Ga0099791_100332721	3300007255	Vadose Zone Soil	MDKSFATGQWLDWLTRVRLLTITLILTVGVVWPQYVPGYSTNRFFLPLIIFWITLGILHLILLRWL
Ga0066793_107682272	3300009029	Prmafrost Soil	MQQSASMKEWLEWLTRVRLLMITLILAVGVVWPKYVPASAESRFFLPLIILWITLG
Ga0099829_103147991	3300009038	Vadose Zone Soil	MDQSFATREWLEWLTRVRLLTITLILTVGVVWPQYVPGVGTNRFFLPLIIFWLTLGILHLILLRW
Ga0099829_114194962	3300009038	Vadose Zone Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGLNTNRFFLPLVIFWITLGILHLILL
Ga0099828_113933321	3300009089	Vadose Zone Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGLNTNRFFLPLIIFWITLGILHLIL
Ga0066709_1012403821	3300009137	Grasslands Soil	MPGLWRGRAMDKSFATGEWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLIVFWITLGI
Ga0127463_10656161	3300010098	Grasslands Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLVIFW
Ga0134070_103972121	3300010301	Grasslands Soil	MPGQKRGRAMDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSSNRFFLPLII
Ga0134067_100020575	3300010321	Grasslands Soil	MDQSFATRAWLEWLARVRLLTITLILTVGVVWPQYVPGLSTNRFFLTLI
Ga0134084_101109691	3300010322	Grasslands Soil	MDKSFATREWLEWLTRVRLLTITLILTIGVVWPQYIPGFSTNRFFLPLIIFWITLGILH
Ga0134065_101630702	3300010326	Grasslands Soil	MDQSFATRAWLEWLARVRLVAITLVLTVGVVWPLYVPALSTKRFFLSLIVSW
Ga0134063_100840702	3300010335	Grasslands Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSTNRFFLPLIIFWMTLGILHLIL
Ga0134062_106604351	3300010337	Grasslands Soil	MDQSFATKAWLEWLARVRLLTITLILTVGVVWPQYVPGLSPNRFFLT
Ga0126376_132027651	3300010359	Tropical Forest Soil	MDQSFAPRAWLEWLARVRLLTITLILTVGVVWPQYVPGLRDNRFFLPLIISWITLGILYLILLR
Ga0126381_1048534021	3300010376	Tropical Forest Soil	MDQSFATKAWLEWLTRVRLLTVTLILTIGFVWPQYAPGLGTNRFFLPLIIFWITLG
Ga0136449_1000377099	3300010379	Peatlands Soil	MDQSTTTREWLGWLTRVRLLTILLILVCDLIWPQYVLPSSPN
Ga0126383_111209931	3300010398	Tropical Forest Soil	MDQSFATRAWLEWLARVRLLTITLILTVGVVWPQYVPG
Ga0126345_10800061	3300010858	Boreal Forest Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYVGNFGANRFFLPLFIFWIT
Ga0150983_118340861	3300011120	Forest Soil	MDQSFATRAWLEWLAWVRLLTITLILTVGVVWPQYVPGFSTNRFFLPLIIF
Ga0150983_124281861	3300011120	Forest Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSTNRFFLPLIIFW
Ga0150983_134657861	3300011120	Forest Soil	MDKSFATREWLDWLTRVRLLTITLILSVGVVWPQYIPGFSTNRFFLPLIIFWLTLGILHLIL
Ga0150983_146197101	3300011120	Forest Soil	MDKSFATREWLDWLTRVRLLTITLILSVGVVWPQYIPGFSTNRFFLPLIIFWLTLGILHLILLRW
Ga0150983_151112711	3300011120	Forest Soil	MDKSFATQEWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFF
Ga0137391_101425721	3300011270	Vadose Zone Soil	MDKSFATGQWLDWLTRVRLLTITLILTIGVVWPQYVPGFSTNR
Ga0137391_105848932	3300011270	Vadose Zone Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYVPGFSTNRFFLPLIIFWITLGIL
Ga0137391_111740921	3300011270	Vadose Zone Soil	MDKSFATGQWLDWLTRVRLLTITLILTIGVVWPQYVPGFSIN
Ga0137391_113075332	3300011270	Vadose Zone Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYVPGFSTNRFFLPLIIFWITFGILHLILLR
Ga0137393_105318881	3300011271	Vadose Zone Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSTNR
Ga0137393_105592101	3300011271	Vadose Zone Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYVGNLG
Ga0137389_104119431	3300012096	Vadose Zone Soil	MDKSFATREWLEWLTRVRLLTITLILTVGVVWPQYIPGLSTNRFFLPL
Ga0137389_106294461	3300012096	Vadose Zone Soil	MDKSFATREWLDWLTRVRLLTITLILTIVVVWPQYVPGFSTNRFFLPLI
Ga0137388_119982301	3300012189	Vadose Zone Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYVPGFSTN
Ga0137364_108898011	3300012198	Vadose Zone Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRF
Ga0137363_117510821	3300012202	Vadose Zone Soil	MDKSFATGQWLDWLTRVRLLTITLILTVGVVWPQYVPGYSTNRFFLPLIIFW
Ga0137399_114125982	3300012203	Vadose Zone Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFS
Ga0137399_117735961	3300012203	Vadose Zone Soil	MDKSFATGQWLDWLTRVRLLTITLILTVGVVWPQYVPGYSTNR
Ga0137362_117176341	3300012205	Vadose Zone Soil	MDKSFATGQWLDWLTRVRLLTITLILTVGVVWPQYVPGYSTNRFF
Ga0137377_116532961	3300012211	Vadose Zone Soil	MDQNFATREWLEWLTRVRLLTITLILTIGVVWPQYVPGLGTNRFFLP
Ga0134028_11266361	3300012224	Grasslands Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFL
Ga0137387_105268031	3300012349	Vadose Zone Soil	MDQSFASRAWLEWLARVRLLTITLILTVGVVWPQYVPGLSTNRFFLTLIVSWITLGILHLILLR
Ga0137384_112340901	3300012357	Vadose Zone Soil	MDQSFATREWLEWLTRVRLLTITLILTVGVVWPQYVPGVGTNRFFLP
Ga0137360_106389092	3300012361	Vadose Zone Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSTNRFFLPLIIFWIT
Ga0137361_117007301	3300012362	Vadose Zone Soil	MDKSFATGQWLDWLTRVRLLTITLILTVGVVWPQYVPGYSTNRFFLPLIIFWITLGI
Ga0137390_101117241	3300012363	Vadose Zone Soil	MDKNFATREWLEWLTRVRLLTITLILTVGVVWPQYVPGFATNRFFLPL
Ga0134039_10487413	3300012374	Grasslands Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLIVLWITLGIL
Ga0134029_11247082	3300012377	Grasslands Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLVIFWLTLGILH
Ga0134026_12225601	3300012381	Grasslands Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLVIFWLTLGI
Ga0134036_11553321	3300012384	Grasslands Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLIVLWITLGILHLILLRW
Ga0134035_12815252	3300012391	Grasslands Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLVIFWLTLGIL
Ga0134043_10507092	3300012392	Grasslands Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLVIFWL
Ga0134024_10171192	3300012404	Grasslands Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLVIFWPQYI
Ga0134060_10033852	3300012410	Grasslands Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLVIFWLTL
Ga0137395_102894131	3300012917	Vadose Zone Soil	MDKSFATGQWLDWLTRVRLLTITLILTVGVVWPQYVPGFSTNHFFLPLIIFW
Ga0137396_109862332	3300012918	Vadose Zone Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYVGNFGANRFFLPLFIFWITLGIL
Ga0137359_100361931	3300012923	Vadose Zone Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSTNRFFLPLIIFWITLGI
Ga0137407_108202362	3300012930	Vadose Zone Soil	MDKSFATREWLEWLTRVRLLTISLILTVGVVWPQYVPGL
Ga0134072_103751741	3300015357	Grasslands Soil	MDQSFATKAWLEWLARVRLLTITLILTVGVVWPQYVPGLSSNRF
Ga0182036_102770941	3300016270	Soil	MDQSFATNAWLEWLARVRLLTITLILTVGVVWPQYVPGLSSNSN
Ga0182034_112368511	3300016371	Soil	MAREGRGDTMDQSFATKAWLEWLARVRLLTITLILTVGVVWPQYVPGLSSNRFFLTLIIFWMTL
Ga0182039_103345531	3300016422	Soil	MDQSFATNAWLEWLARVRLLTITLILTVGVVWPQYVPGLSSNRFFLTLIIFW
Ga0187806_12538272	3300017928	Freshwater Sediment	MDQTFATSGWLEWLTRVRLLTITLILTVGVVWPQYVPGFSTNRFFSSAH
Ga0187825_103560222	3300017930	Freshwater Sediment	MDQSFATKAWLEWLTRVRLLTITFILTVGVVWPQYVPGFSTNRFFLPLIIFWM
Ga0066667_119173611	3300018433	Grasslands Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSTNRFFLPLIIFWITL
Ga0066662_126470292	3300018468	Grasslands Soil	MDKSFATREWLEWLTRVRLLTITLILTIGVVWPQYIPGFSSNRFFLPLIIFWITLGVLH
Ga0193755_10345803	3300020004	Soil	MPEGRRGRAMDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYVGNLGANRFFLPLFIFWITLG
Ga0193717_11858271	3300020060	Soil	MREWLDWLTRVRLLTVLLMLTVGVVWPQYVPNSDINRYFLPLLIFWITLGITHIILMRWLPA
Ga0179594_103257212	3300020170	Vadose Zone Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYVGN
Ga0210403_102420082	3300020580	Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSTNRFFLPLIIFWITLGIL
Ga0210406_101469613	3300021168	Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLIIFWITFGLLDLILLRWCH
Ga0210406_107241292	3300021168	Soil	MREWLDWLTRVRLLMITLILAIGVVWPQSVLISGTTRFFLPLIIFWLTLAILEVI
Ga0210400_115222702	3300021170	Soil	MDKSFATREWLEWLTRVRLLTITLILTVGVVWPQYVPGLSSNRFFLPLIIFWLTLGIIHLILLRW
Ga0210389_109437002	3300021404	Soil	MDQGTTTREWLGWLTRVRLLTILLILVVDLIWPQY
Ga0210387_100051531	3300021405	Soil	MEQSATTREWLGWLTRVRLLTILLILAVDLIWPQY
Ga0210387_110933261	3300021405	Soil	MKHGRAMDKSFATKEWLDWLTRVRLLMITLILTVGVVWPQSLPSSATSRFFLPLIIFWLTLGI
Ga0210394_104838322	3300021420	Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSTNRFFLPLIIFWITLG
Ga0210394_114373271	3300021420	Soil	MDQSTTTREWLGWLTRVRLLTILLILVVDLFWPQYVLPAGI
Ga0210402_106069272	3300021478	Soil	MDQSTTTGEWLGWLTRVRLLTILLILVVDLFWPQYV
Ga0213854_10506841	3300021855	Watersheds	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSTNRF
Ga0242648_10511771	3300022506	Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSTNRFFLPLIIFWITLGILHLIL
Ga0242663_10154192	3300022523	Soil	MDKSFATQEWLDWLTRVRLLTITLILSVGVVWPQYIPGFSTNRFFLPLIIFWLT
Ga0242660_10371481	3300022531	Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSTNRFFLPLIIFWITLGILHLILLR
Ga0242655_100105771	3300022532	Soil	MDQSFATRAWLEWLAWVRLLTITLILTVGVVWPQYVPGFSTNRFFLPL
Ga0242655_100753062	3300022532	Soil	MDKSFATQEWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLIIFWI
Ga0242662_100247631	3300022533	Soil	MDKSFATREWLDWLTRVRLLTITLILSVGVVWPQYIPGFSTNRFFLPLIIF
Ga0242657_10194391	3300022722	Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLIIFW
Ga0242665_100229171	3300022724	Soil	MDKSFATREWLDWLTRVRLLTITLILSVGVVWPQYIPGFSTNRIFLPLIIF
Ga0242665_100406222	3300022724	Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYI
Ga0242654_100463932	3300022726	Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYVGYFTVNRFFLPLFIFWITLGILH
Ga0179589_104569061	3300024288	Vadose Zone Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSTNRFF
Ga0137417_13856381	3300024330	Vadose Zone Soil	MDKSFATGQWLDWLTRVRLLTITLILTVGVVWPQYVP
Ga0209237_10901102	3300026297	Grasslands Soil	MDKSFATGQWLDWLTRVRLLTITLILTIGVVWPQYVP
Ga0209055_10735401	3300026309	Soil	MDKNFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSTNRFF
Ga0209761_11914961	3300026313	Grasslands Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSSNRFFLPLII
Ga0209471_10758043	3300026318	Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLVI
Ga0209473_10380751	3300026330	Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIP
Ga0209267_10684751	3300026331	Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLVIFWLTLGILHLILLRSL
Ga0209377_10560721	3300026334	Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLIVFWITL
Ga0209377_13247081	3300026334	Soil	MDQNFATREWLEWLTRVRLLTITLILTIGVVWPQYVPGLGTNRF
Ga0209057_10216584	3300026342	Soil	MDKSFATREWLEWLTRVRLLTITLILTIGVVWPQYIPGFSSNRFFLPLI
Ga0257179_10290902	3300026371	Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGLNTNRFFLPLIIFWITLGIL
Ga0257158_10024253	3300026515	Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSTNRFFLPLIIFWITLGILHL
Ga0209808_11735481	3300026523	Soil	MDQSFATKAWLEWLARVRLLTITLILTVGVVWPQY
Ga0209690_10686653	3300026524	Soil	MDQSFATRAWLEWLTRVRLLTITLILTVGVVWPQYVPGSSTNRFFLPLIIFWITLGILHL
Ga0209806_13073112	3300026529	Soil	MPGLWRGRAMDKSFATGEWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRF
Ga0209157_11112492	3300026537	Soil	MDQSFATREWLEWLTRVRLLTITLILTIGVVWPQYVPGLGTIRFFLPLIIFWLTLG
Ga0209376_11171281	3300026540	Soil	MDKSFATGQWLDWLTRVRLLTITLILTIGVVWPQYVPGFSANRFFLPLIIFWITLGIL
Ga0209805_12455132	3300026542	Soil	MDQSFATRAWLEWLARVRLLTITLILTVGVVWPQYVPGLSTNRFFLTLIVSWITLGILHLILL
Ga0209648_106919091	3300026551	Grasslands Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGF
Ga0209648_107518041	3300026551	Grasslands Soil	MDKSFATGQWLDWLTRVRLLTITLILTVGVVWPQYVPGYSTNRFFLPLIIFWITLGILHLILL
Ga0209729_10194942	3300027061	Forest Soil	MDKSFATREWLEWLTRVRLLTITLILSVGVVWPQYVPGLSA
Ga0208099_10600342	3300027096	Forest Soil	MDQSSTTREWLGWLTRVRLLTILLILVVDLFWPQYVL
Ga0209076_10226981	3300027643	Vadose Zone Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYVGNLGANRFFLPLFIFW
Ga0209076_11399292	3300027643	Vadose Zone Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQY
Ga0209736_11862602	3300027660	Forest Soil	MQQSASMKEWLEWLTRVRLLMITLILAVGVVWPKYVPASPGSRFFLPLIIFW
Ga0209118_10201873	3300027674	Forest Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPG
Ga0209073_103749861	3300027765	Agricultural Soil	MDQSFATRAWLEWLARVRLLTITLILTVGVVWPQYVPGLSTNRFFLTLIISWITLGILHL
Ga0209180_102795202	3300027846	Vadose Zone Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSTNRFFLP
Ga0209180_104144612	3300027846	Vadose Zone Soil	MPGRRRGRAMDQSFATREWLEWLTRVRLLTITLILTVGVVWPQYVPGVGTNRFFLPLIIFWLTLGI
Ga0209590_105794741	3300027882	Vadose Zone Soil	MDKNFATRQWLDWLTRVRLLTITLILTIGVVWPQYVPGFSTNRFFLP
Ga0222748_10347901	3300029701	Soil	MDQSSTTREWLGWLTRVRLLTILLILVVDLFWPQYVLPSGVNR
Ga0307482_12843881	3300030730	Hardwood Forest Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYVPGFSTNRF
Ga0265460_120935342	3300030740	Soil	MDQSTTTREWLGWLTRVRLLTILLILGVGLLWPQYV
Ga0265753_10162102	3300030862	Soil	MDQSTTTREWLGWLTRVRLLTILLILVVDLIWPQYVL
Ga0074035_108471241	3300031000	Soil	MDQSTTTREWLGWLTRVRLLTILLILGAGLLWPQYK
Ga0265773_10116451	3300031018	Soil	MDQSSTTREWLGWLTRVRLLTILLILVVDLIWPQYVLPAGTNR
Ga0170818_1120327011	3300031474	Forest Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYIPGFSTNRFFLPLIIFWITL
Ga0307474_110022241	3300031718	Hardwood Forest Soil	MDQSFASKEWLEWLTRVRLLTITLILTVGVVWPQYVP
Ga0307469_111242472	3300031720	Hardwood Forest Soil	MDKSFATREWLEWLTRVRLLTITLILSVGVVWPQYIPGLSTN
Ga0307477_100706991	3300031753	Hardwood Forest Soil	MDQSFATKAWLEWLARVRLLTITLILTVGVVWPQYVPGLSPNRFFLTLI
Ga0307475_101645111	3300031754	Hardwood Forest Soil	MQQSASMKEWLEWLTRVRLLMITLILAVGVVWPKYVPASPGSRFFLPLIIFWITL
Ga0307475_113191481	3300031754	Hardwood Forest Soil	MDKSFAIREWLDWLTRVRLLTITLILTIGVVWPQYIPGFSTNRFFLPLIIFWITL
Ga0307475_114892461	3300031754	Hardwood Forest Soil	MDKSFATREWLDWLTRVRLLTITLILTIGVVWPQYVPGFSTNRFFLPLVVFWI
Ga0307473_106177371	3300031820	Hardwood Forest Soil	MDKSFATREWLEWLTRVRLLTITLILTVGVVWPQYVPGLSG
Ga0307478_118017061	3300031823	Hardwood Forest Soil	MDQSFATRAWLEWLARVRLLTITLILTVGVVWPQYVPGFSTNRFF
Ga0318544_103956361	3300031880	Soil	MDQSFATNAWLEWLARVRLLTITLILTVGVVWPQYVPGLSSNSNRFFLTLIIFWITLGIL
Ga0310909_102821001	3300031947	Soil	MDQSFATNAWLEWLARVRLLTITLILTVGVVWPQYVPGLSSNSNRFFLT
Ga0307479_101199193	3300031962	Hardwood Forest Soil	MDKSFATGQWLDWLTRVRLLTITLILTVGVVWPQYVPGYSTNRFFLPLIIFWITLGILHLILLR
Ga0318533_107015361	3300032059	Soil	MDQSFATNAWLEWLARVRLLTITLILTVGVVWPQYVPGLS
Ga0311301_107341292	3300032160	Peatlands Soil	MDQSFATREWLEWLTRVRLLTITLILTVGVVWPQYVPGFSTNRFFLPLIIFWITLGILHQILL
Ga0307471_1024674072	3300032180	Hardwood Forest Soil	MDKSFATREWLEWLTRVRLLTITLILSVGVVWPQYIPGLSTNRF
Ga0307471_1037138672	3300032180	Hardwood Forest Soil	MDKSFATREWLDWLTRVRLLTITLILTVGVVWPQYVGNLGANRFFLPLF

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F033878

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign