Metagenome / Metatranscriptome Family F033730

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F033730
Family Type	Metagenome / Metatranscriptome
Number of Sequences	176
Average Sequence Length	57 residues
Representative Sequence	MTVPRLDDSPIPPVSADRRRRAALVVCGRADDRDSARLLLEALGLLDDPEIRRR
Number of Associated Samples	81
Number of Associated Scaffolds	176

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	41.62 %
% of genes near scaffold ends (potentially truncated)	30.68 %
% of genes from short scaffolds (< 2000 bps)	88.07 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.386 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere (19.318 % of family members)
Environment Ontology (ENVO)	Unclassified (44.318 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (71.591 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.15% β-sheet: 0.00% Coil/Unstructured: 65.85%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 176 Family Scaffolds
PF01545	Cation_efflux	5.68
PF02557	VanY	2.27
PF01171	ATP_bind_3	2.27
PF02801	Ketoacyl-synt_C	0.57
PF00583	Acetyltransf_1	0.57
PF02597	ThiS	0.57
PF03476	MOSC_N	0.57
PF00892	EamA	0.57

COG ID	Name	Functional Category	% Frequency in 176 Family Scaffolds
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	5.68
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	5.68
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	5.68
COG0037	tRNA(Ile)-lysidine synthase TilS/MesJ	Translation, ribosomal structure and biogenesis [J]	2.27
COG0301	Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	2.27
COG0482	tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain	Translation, ribosomal structure and biogenesis [J]	2.27
COG0519	GMP synthase, PP-ATPase domain/subunit	Nucleotide transport and metabolism [F]	2.27
COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	2.27
COG1606	ATP-utilizing enzyme, PP-loop superfamily	General function prediction only [R]	2.27
COG1876	LD-carboxypeptidase LdcB, LAS superfamily	Cell wall/membrane/envelope biogenesis [M]	2.27
COG2173	D-alanyl-D-alanine dipeptidase	Cell wall/membrane/envelope biogenesis [M]	2.27
COG1977	Molybdopterin synthase sulfur carrier subunit MoaD	Coenzyme transport and metabolism [H]	0.57
COG2104	Sulfur carrier protein ThiS (thiamine biosynthesis)	Coenzyme transport and metabolism [H]	0.57
COG3217	N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain	Defense mechanisms [V]	0.57

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.39 %
Unclassified	root	N/A	42.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.39 %
Unclassified	root	N/A	42.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.39 %
Unclassified	root	N/A	42.61 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	55.11 %
Unclassified	root	N/A	42.61 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.57 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	55.11 %
Unclassified	root	N/A	42.61 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.57 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	47.73 %
Unclassified	root	N/A	42.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.61 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	18.75 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	5.11 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.98 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2.84 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.57 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.57 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.61 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	18.75 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.11 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.98 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	2.84 %
unclassified Frankiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → unclassified Frankiales	0.57 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.57 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.61 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	18.75 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.11 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.98 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	2.84 %
Frankiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → unclassified Frankiales → Frankiales bacterium	0.57 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.57 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.57 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001686\|C688J18823_10933063	Not Available	551	Open in IMG/M
3300002568\|C688J35102_117900913	Not Available	514	Open in IMG/M
3300002568\|C688J35102_118405980	Not Available	556	Open in IMG/M
3300002568\|C688J35102_118416482	Not Available	557	Open in IMG/M
3300002568\|C688J35102_118728843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	590	Open in IMG/M
3300002568\|C688J35102_119625362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	734	Open in IMG/M
3300002568\|C688J35102_120244893	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300002568\|C688J35102_120339720	Not Available	1000	Open in IMG/M
3300002568\|C688J35102_120400164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1040	Open in IMG/M
3300003321\|soilH1_10112179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1630	Open in IMG/M
3300003321\|soilH1_10334900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1267	Open in IMG/M
3300004081\|Ga0063454_100590615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	808	Open in IMG/M
3300004114\|Ga0062593_102241706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	613	Open in IMG/M
3300004799\|Ga0058863_11231968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	966	Open in IMG/M
3300005093\|Ga0062594_100090952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1778	Open in IMG/M
3300005093\|Ga0062594_100584654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	973	Open in IMG/M
3300005093\|Ga0062594_101078503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	782	Open in IMG/M
3300005167\|Ga0066672_10590983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	719	Open in IMG/M
3300005177\|Ga0066690_10979936	Not Available	533	Open in IMG/M
3300005327\|Ga0070658_10000158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	59813	Open in IMG/M
3300005327\|Ga0070658_10086358	All Organisms → cellular organisms → Bacteria	2581	Open in IMG/M
3300005327\|Ga0070658_10111982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2262	Open in IMG/M
3300005327\|Ga0070658_10166198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1852	Open in IMG/M
3300005327\|Ga0070658_10219354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1608	Open in IMG/M
3300005327\|Ga0070658_10228525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1575	Open in IMG/M
3300005327\|Ga0070658_10544098	Not Available	1005	Open in IMG/M
3300005327\|Ga0070658_10642527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	920	Open in IMG/M
3300005327\|Ga0070658_10765069	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300005329\|Ga0070683_100163417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2112	Open in IMG/M
3300005329\|Ga0070683_101484563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	652	Open in IMG/M
3300005329\|Ga0070683_102221106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	527	Open in IMG/M
3300005334\|Ga0068869_100275223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1352	Open in IMG/M
3300005336\|Ga0070680_100023992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4868	Open in IMG/M
3300005336\|Ga0070680_100339061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1277	Open in IMG/M
3300005336\|Ga0070680_100423568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1136	Open in IMG/M
3300005336\|Ga0070680_101597551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	565	Open in IMG/M
3300005345\|Ga0070692_10067037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1904	Open in IMG/M
3300005356\|Ga0070674_101825784	Not Available	551	Open in IMG/M
3300005366\|Ga0070659_100946961	Not Available	754	Open in IMG/M
3300005435\|Ga0070714_100327534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1434	Open in IMG/M
3300005435\|Ga0070714_102368044	Not Available	516	Open in IMG/M
3300005436\|Ga0070713_102000009	Not Available	562	Open in IMG/M
3300005456\|Ga0070678_100187317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1699	Open in IMG/M
3300005458\|Ga0070681_10092249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2978	Open in IMG/M
3300005458\|Ga0070681_10373695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1336	Open in IMG/M
3300005458\|Ga0070681_11048004	Not Available	736	Open in IMG/M
3300005458\|Ga0070681_11472780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	605	Open in IMG/M
3300005530\|Ga0070679_100262809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1681	Open in IMG/M
3300005530\|Ga0070679_100475901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1193	Open in IMG/M
3300005530\|Ga0070679_100665726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	984	Open in IMG/M
3300005530\|Ga0070679_101052200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	758	Open in IMG/M
3300005535\|Ga0070684_100044515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3840	Open in IMG/M
3300005535\|Ga0070684_100955309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	804	Open in IMG/M
3300005547\|Ga0070693_100677725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	752	Open in IMG/M
3300005547\|Ga0070693_101007374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	630	Open in IMG/M
3300005563\|Ga0068855_100748748	Not Available	1042	Open in IMG/M
3300005587\|Ga0066654_10238641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	956	Open in IMG/M
3300005834\|Ga0068851_10199718	Not Available	1115	Open in IMG/M
3300006028\|Ga0070717_11945997	Not Available	530	Open in IMG/M
3300006032\|Ga0066696_10091279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1811	Open in IMG/M
3300006032\|Ga0066696_10096746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1766	Open in IMG/M
3300006800\|Ga0066660_10260151	Not Available	1363	Open in IMG/M
3300006800\|Ga0066660_10433466	Not Available	1094	Open in IMG/M
3300006806\|Ga0079220_11890688	Not Available	529	Open in IMG/M
3300009176\|Ga0105242_10126911	Not Available	2197	Open in IMG/M
3300009176\|Ga0105242_11943324	Not Available	629	Open in IMG/M
3300009545\|Ga0105237_10162512	Not Available	2232	Open in IMG/M
3300009551\|Ga0105238_11910479	Not Available	627	Open in IMG/M
3300009551\|Ga0105238_12520825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	550	Open in IMG/M
3300010152\|Ga0126318_10148514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	503	Open in IMG/M
3300010152\|Ga0126318_10156606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	502	Open in IMG/M
3300010152\|Ga0126318_10159849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	574	Open in IMG/M
3300010152\|Ga0126318_10177230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	576	Open in IMG/M
3300010152\|Ga0126318_11147521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	544	Open in IMG/M
3300010335\|Ga0134063_10753552	Not Available	507	Open in IMG/M
3300010396\|Ga0134126_11383527	Not Available	778	Open in IMG/M
3300011119\|Ga0105246_11686278	Not Available	602	Open in IMG/M
3300012212\|Ga0150985_107127380	Not Available	704	Open in IMG/M
3300012212\|Ga0150985_123070695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	616	Open in IMG/M
3300012469\|Ga0150984_102328523	Not Available	526	Open in IMG/M
3300012469\|Ga0150984_108663893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	610	Open in IMG/M
3300012469\|Ga0150984_110714048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	641	Open in IMG/M
3300012977\|Ga0134087_10238395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	829	Open in IMG/M
3300013100\|Ga0157373_10337297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1074	Open in IMG/M
3300013105\|Ga0157369_10000585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	47583	Open in IMG/M
3300013105\|Ga0157369_10241705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1886	Open in IMG/M
3300013105\|Ga0157369_10253718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1835	Open in IMG/M
3300013105\|Ga0157369_10813528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	960	Open in IMG/M
3300013296\|Ga0157374_10864600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	921	Open in IMG/M
3300013307\|Ga0157372_12018811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	663	Open in IMG/M
3300013307\|Ga0157372_12962390	Not Available	543	Open in IMG/M
3300013307\|Ga0157372_13083227	Not Available	532	Open in IMG/M
3300013307\|Ga0157372_13467278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	501	Open in IMG/M
3300015357\|Ga0134072_10179983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	717	Open in IMG/M
3300015371\|Ga0132258_10195912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	4897	Open in IMG/M
3300015371\|Ga0132258_10305168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3917	Open in IMG/M
3300015371\|Ga0132258_10943210	Not Available	2180	Open in IMG/M
3300015371\|Ga0132258_12840642	Not Available	1205	Open in IMG/M
3300015373\|Ga0132257_102871140	Not Available	628	Open in IMG/M
3300018431\|Ga0066655_11351720	Not Available	514	Open in IMG/M
3300018433\|Ga0066667_10045271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2611	Open in IMG/M
3300018433\|Ga0066667_11108209	Not Available	685	Open in IMG/M
3300018468\|Ga0066662_10003434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7617	Open in IMG/M
3300018468\|Ga0066662_10162091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1710	Open in IMG/M
3300020069\|Ga0197907_10314252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	525	Open in IMG/M
3300020069\|Ga0197907_10410780	Not Available	616	Open in IMG/M
3300020069\|Ga0197907_10492678	Not Available	619	Open in IMG/M
3300020069\|Ga0197907_10498514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	540	Open in IMG/M
3300020069\|Ga0197907_10600599	Not Available	529	Open in IMG/M
3300020069\|Ga0197907_10642588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	529	Open in IMG/M
3300020069\|Ga0197907_10650175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	572	Open in IMG/M
3300020069\|Ga0197907_10747303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	510	Open in IMG/M
3300020070\|Ga0206356_10173576	Not Available	539	Open in IMG/M
3300020070\|Ga0206356_10750062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	526	Open in IMG/M
3300020070\|Ga0206356_11326813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	579	Open in IMG/M
3300020070\|Ga0206356_11607887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	739	Open in IMG/M
3300020075\|Ga0206349_1151906	Not Available	673	Open in IMG/M
3300020075\|Ga0206349_1322294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	548	Open in IMG/M
3300020075\|Ga0206349_1886173	Not Available	687	Open in IMG/M
3300020077\|Ga0206351_10125639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	521	Open in IMG/M
3300020077\|Ga0206351_10469410	Not Available	611	Open in IMG/M
3300020078\|Ga0206352_10238795	Not Available	558	Open in IMG/M
3300020078\|Ga0206352_10366251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	659	Open in IMG/M
3300020080\|Ga0206350_10403524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	550	Open in IMG/M
3300020081\|Ga0206354_10226563	Not Available	606	Open in IMG/M
3300020081\|Ga0206354_10751366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	675	Open in IMG/M
3300020081\|Ga0206354_11360432	Not Available	707	Open in IMG/M
3300020082\|Ga0206353_10712505	Not Available	639	Open in IMG/M
3300020082\|Ga0206353_10750274	Not Available	561	Open in IMG/M
3300020082\|Ga0206353_10871366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	858	Open in IMG/M
3300020082\|Ga0206353_11108162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	786	Open in IMG/M
3300020082\|Ga0206353_11457076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	718	Open in IMG/M
3300020610\|Ga0154015_1642560	Not Available	711	Open in IMG/M
3300021377\|Ga0213874_10280998	Not Available	621	Open in IMG/M
3300021953\|Ga0213880_10226450	Not Available	532	Open in IMG/M
3300022467\|Ga0224712_10006364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3362	Open in IMG/M
3300022467\|Ga0224712_10536927	Not Available	567	Open in IMG/M
3300022467\|Ga0224712_10537722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	567	Open in IMG/M
3300022467\|Ga0224712_10540458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	566	Open in IMG/M
3300022467\|Ga0224712_10638214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	521	Open in IMG/M
3300025903\|Ga0207680_10930823	Not Available	623	Open in IMG/M
3300025909\|Ga0207705_10117900	Not Available	1967	Open in IMG/M
3300025909\|Ga0207705_10143248	Not Available	1786	Open in IMG/M
3300025909\|Ga0207705_10151263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1739	Open in IMG/M
3300025909\|Ga0207705_10164152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → unclassified Frankiales → Frankiales bacterium	1670	Open in IMG/M
3300025909\|Ga0207705_11299115	Not Available	556	Open in IMG/M
3300025912\|Ga0207707_10347325	Not Available	1279	Open in IMG/M
3300025912\|Ga0207707_11021405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	678	Open in IMG/M
3300025912\|Ga0207707_11513958	Not Available	531	Open in IMG/M
3300025914\|Ga0207671_10318986	Not Available	1229	Open in IMG/M
3300025919\|Ga0207657_10160187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1828	Open in IMG/M
3300025921\|Ga0207652_10450574	Not Available	1160	Open in IMG/M
3300025921\|Ga0207652_10570966	Not Available	1016	Open in IMG/M
3300025921\|Ga0207652_10708983	Not Available	897	Open in IMG/M
3300025921\|Ga0207652_10931996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	766	Open in IMG/M
3300025921\|Ga0207652_10938885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	763	Open in IMG/M
3300025927\|Ga0207687_11093769	Not Available	684	Open in IMG/M
3300025928\|Ga0207700_11901420	Not Available	521	Open in IMG/M
3300025929\|Ga0207664_11360924	Not Available	630	Open in IMG/M
3300025929\|Ga0207664_11900364	Not Available	518	Open in IMG/M
3300025932\|Ga0207690_10175925	Not Available	1607	Open in IMG/M
3300025934\|Ga0207686_11445137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	566	Open in IMG/M
3300025944\|Ga0207661_10812796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	861	Open in IMG/M
3300026552\|Ga0209577_10779648	Not Available	535	Open in IMG/M
3300027766\|Ga0209796_10062935	Not Available	1122	Open in IMG/M
3300027766\|Ga0209796_10076949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1016	Open in IMG/M
3300031938\|Ga0308175_100178282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	2070	Open in IMG/M
3300031938\|Ga0308175_100197365	Not Available	1979	Open in IMG/M
3300031938\|Ga0308175_100198919	Not Available	1972	Open in IMG/M
3300031938\|Ga0308175_100350580	Not Available	1525	Open in IMG/M
3300031996\|Ga0308176_10089616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2667	Open in IMG/M
3300031996\|Ga0308176_10981958	Not Available	890	Open in IMG/M
3300032074\|Ga0308173_11800650	Not Available	577	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.05%
Host-Associated	Host-Associated	32.95%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.20%
Plants	Host-Associated → Plants	32.39%
Aquatic	Environmental → Aquatic	2.84%
Human	Host-Associated → Human	0.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.82%
Freshwater	Environmental → Aquatic → Freshwater	2.84%
Phylloplane	Host-Associated → Plants → Phylloplane	1.14%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.57%
Digestive System	Host-Associated → Human → Digestive System	0.57%
Roots	Host-Associated → Plants → Roots	0.57%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.93%
Loam	Environmental → Terrestrial → Soil → Loam	26.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.98%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.84%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.27%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	1.14%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.57%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.57%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.57%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.57%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	21.02%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.39%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	5.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.98%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.27%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	1.14%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.57%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.57%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.57%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	19.32%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	14.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	9.66%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	5.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.41%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.84%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.27%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.27%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.27%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.70%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.14%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.14%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.14%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.14%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	1.14%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.57%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.57%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.57%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.57%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.57%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020077	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020610	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027766	Agave microbial communities from Guanajuato, Mexico - Or.Sf.rz (SPAdes)	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J18823_109330632	3300001686	Soil	MGGVTDGYVGSRSGMTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPEIRQSH*
C688J35102_1179009132	3300002568	Soil	MTVPRLDDSPIPPVSDDQRRRAALVVCSRADDRDTARLLLDVLGLLDDPAVSAAAAAAS*
C688J35102_1184059802	3300002568	Soil	MTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLVLEALGLLDDPEIKQH*
C688J35102_1184164822	3300002568	Soil	RMTVPRLDDSPIPPVSDELRRRAALVVCSRADDRESARLLLDALGLLDDPSVTRRAS*
C688J35102_1187288431	3300002568	Soil	MTVPRLDDSPIPPVSDELRRRAALVVCSRADDRDSARLLLEALGLLDDPSVSRRAS*
C688J35102_1196253622	3300002568	Soil	MGGVTDGYGGSRSGMTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPEIKRSH*
C688J35102_1202448931	3300002568	Soil	MGGVTNCHVGSRSGMTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPEIRQR*
C688J35102_1203397201	3300002568	Soil	MTVPRLDDSPIPPVSPDRRRRAALVVCGRAGDRDSARTVLEALGLIDDPAVAGALDGLV*
C688J35102_1204001642	3300002568	Soil	MEGVTNCHVGSRSGMTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPDIRQH*
soilH1_101121792	3300003321	Sugarcane Root And Bulk Soil	MTVPRLDDSPIPPVSADCRRKAALVICGRAGDHESARLLLDALGLLDDPEIRSR*
soilH1_103349002	3300003321	Sugarcane Root And Bulk Soil	MTARDVGSAPRMTVPRLDDSPIPAISPDRRRRAALVVCGRAGDRESARTVLEALGLIDDPAIAGTLEAMR*
Ga0063454_1005906153	3300004081	Soil	SPIPTVTDEQRRQAALVVCSRADDTQTARLLLDALGLLDDPVVRQHAAAG*
Ga0062593_1022417062	3300004114	Soil	MTPPYVGSGDRMTVPRLDDSPIPSISPDRRRQAALVVCGRAGDRESARTVLEALGLIDDPAVAGTLDAMG*
Ga0058863_112319682	3300004799	Host-Associated	MTVPRLDDSPIPLISPERRRRAALVVCGRAGDRESARTVLEALGLIDDPAVAGTLEAMG*
Ga0062594_1000909523	3300005093	Soil	MTVPRLDDSPIPPVSDELRRRAALVVCSRADDRDSARLLLDALGLLDDPSVTRRAG*
Ga0062594_1005846543	3300005093	Soil	GSRSRMTVPRLDDSPIPPVSADCRRKAALVICGRAGDHESARMLLDALGLLDDPEIRSR*
Ga0062594_1010785031	3300005093	Soil	MTVPRLDDSPIPSISPDRRRQAALVVCGRAGDRESARTVLEALGLIDDPAVAGTLEAMG*
Ga0066672_105909832	3300005167	Soil	MTVPRLDDSPIPPVSPDRRRRAALIVCGRAGDRESARTVLEALGLIDDPAVAGALESMA*
Ga0066690_109799362	3300005177	Soil	MTVPRLDDSPIPPISAERRRQAALVVCGRAEDREAARLLLDALGLLDDPDVRRR*
Ga0070658_1000015843	3300005327	Corn Rhizosphere	MTVPRLDDSPIPPVLRTAVDEPRVVCGRAEDRDAARLLLDALGLLDDPENGVSGG*
Ga0070658_100863583	3300005327	Corn Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPEIRRAG*
Ga0070658_101119823	3300005327	Corn Rhizosphere	MTVPRLDDSPIPPISADRRRRAALVVCGRADDRESARLLLDALGLLDDPDVRRARPS*
Ga0070658_101661983	3300005327	Corn Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCGRADDRDSARLLLEALGLLDDPEIRGR*
Ga0070658_102193543	3300005327	Corn Rhizosphere	MTVPRLDDSPIPPVPAERRRRAALVVCGRAGDNDSARLLLEALGLLDDPEIRPRR*
Ga0070658_102285253	3300005327	Corn Rhizosphere	MTVPRLDDSPIPPVSDELRRRAALVVCSRADDRDTARLLLDALGLLDDLVVHRAS*
Ga0070658_105440983	3300005327	Corn Rhizosphere	MGGVTAARVGSRSGMTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPDIRRAG*
Ga0070658_106425273	3300005327	Corn Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCGRADDRDSARLLLEALGLLDDPEIRRR*
Ga0070658_107650691	3300005327	Corn Rhizosphere	DDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPEIRRAG*
Ga0070683_1001634171	3300005329	Corn Rhizosphere	MTVPRLDDSPIPLISPERRRRAALVVCGRAGDRESARTVLEALGLI
Ga0070683_1014845631	3300005329	Corn Rhizosphere	MTVPRLDDSPIPPVSPDRRRQAALVVCGRAGDRESARTVLEALGLIDDPAIAGTLEAMG*
Ga0070683_1022211062	3300005329	Corn Rhizosphere	VAWGSRSGMTVPRLDDSPIPPVSADRRRRAALVVCGRADDRDSARLLLEALGLLDDPEIRRR*
Ga0070690_1004712711	3300005330	Switchgrass Rhizosphere	AERRRRAALVVCGRADDRESARLLLDALGLLDDPDVRPTRSA*
Ga0068869_1002752233	3300005334	Miscanthus Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCGRAEDQESARLLLDALGLLDDPDVRRKAS*
Ga0070680_1000239924	3300005336	Corn Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCSRAGDHDSARMLLDALGLLDDPDIRS*
Ga0070680_1003390613	3300005336	Corn Rhizosphere	MTVPRLDDSPIPPVTPDRRRRAALVVCGRAEDRDAARLLLDALGLLDDPEIRR*
Ga0070680_1004235682	3300005336	Corn Rhizosphere	MTVPRLDDSPIPPVSADCRRKAALVICGRAGDHESARMLLDALGLLDDPEIRSR*
Ga0070680_1015975512	3300005336	Corn Rhizosphere	TAGSRSGMTVPRLDDSPIPPVSPDRRRQAALVVCGRAGDRDSARTVLEALGLIDDPAIAGTLETMKA*
Ga0070692_100670374	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	PRLDDSPIPPISADRRRRAALVVCGRADDRESARLLLDALGLLDDPDVRRARPS*
Ga0070674_1018257841	3300005356	Miscanthus Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPEIRRH*
Ga0070659_1009469612	3300005366	Corn Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCGRADDRDSARLLLEALGLLDDPEIRSR*
Ga0070714_1003275341	3300005435	Agricultural Soil	MMRLSRGSAPRMTVPRLDDSPIPPVSDELRRRAALVVCSRADDRDSARLLLDALGLLDDPVVNRRAG*
Ga0070714_1023680441	3300005435	Agricultural Soil	MTVPRLDDSPIPPVSADRRRRAAIVVCGRAGDRDDARLLLDALGLLDDPDIRS*
Ga0070713_1020000092	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPRLDDSPIPPVSDELRRRAALVVCSRADDRDSARLLLDALGLLDDPVVNRRAG*
Ga0070678_1001873173	3300005456	Miscanthus Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPDIRRAG*
Ga0070681_100922493	3300005458	Corn Rhizosphere	MTVPRLDDSPIPPVSDELRRRAALVVCSRADDRDSARLLLDALGLLDDPSVTKRAG*
Ga0070681_103736953	3300005458	Corn Rhizosphere	MTVPRLADSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPEIRRH*
Ga0070681_110480042	3300005458	Corn Rhizosphere	MTPPYVGSGDRMTVPRLDDSPIPSISPDRRRQAALVVCGRAGDRESARTVLEALGLIDDPAVAGTLEAMG*
Ga0070681_114727801	3300005458	Corn Rhizosphere	VPRLDDSPIPPVSPDRRRQAALVVCGRAGDRDSARTVLEALGLIDDPAVAGTLEAMG*
Ga0070679_1002628091	3300005530	Corn Rhizosphere	MTGAEMGSGDRMTVPRLDDSPIPAISPDRRRRAALVVCGRAGDRESAKTVLEALGLIDDPAIAGALDRMS*
Ga0070679_1004759011	3300005530	Corn Rhizosphere	GSGMTVPRLDDSPIPPVSDELRRRAALVVCSRADDRDSARLLLDALGLLDDPSVTKRAG*
Ga0070679_1006657263	3300005530	Corn Rhizosphere	MTVPRLDDSPIPPVSADCRRKAALVICGRAGDNESARLLLDALGLLDDPEIRSR*
Ga0070679_1010522002	3300005530	Corn Rhizosphere	MTVPRLDDSPIPPVSPDRRRQAALVVCGRAGDRDSARTVLEALGLIDDPAIAGTLEAMG*
Ga0070684_1000445154	3300005535	Corn Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLDALGLLDDPEIRQR*
Ga0070684_1009553092	3300005535	Corn Rhizosphere	PRLDDSPIPPVSPDRRRQAALVVCGRAGDRDSARTVLEALGLIDDPAIAGTLETMKA*
Ga0070693_1006777251	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPRLDDSPIPLISPERRRRAALVVCGRAGDRESARTVLEALGLIDDPAVSGTLEAMG*
Ga0070693_1010073741	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	PIPPVSADRRRRAALVVCSRADDRDSARLLLDALGLLDDPEIRQR*
Ga0068855_1007487483	3300005563	Corn Rhizosphere	MTVPRLDDSPIPPISPDRRRRAALVVCGRAEDRESARLLLDALGLLDDPEVRGRS*
Ga0066654_102386412	3300005587	Soil	MTVPRLDDSPIPPVSADRRRRAALVVCSRAGDNESARLLLEALGLLDDPDIRRH*
Ga0068851_101997183	3300005834	Corn Rhizosphere	MTVPRLDDSPIPPISADRRRRAALVVCGRAEDRESARLLLEALGLLDDPDVRRRAS*
Ga0070717_119459972	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCGRADDRDSARMLLDALGLLDDPEIRV*
Ga0066696_100912793	3300006032	Soil	LGSGPGMTVPRLDDSPIPPVSPDRRRRAALIVCGRAGDRESARTVLEALGLIDDPAVAGALESMA*
Ga0066696_100967463	3300006032	Soil	MTVPRLDDSPIPPVPVERRRLAALVVCGRAGDNDSARLLLDALGLLDDPEIRSR*
Ga0066660_102601514	3300006800	Soil	MTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPEIKRAG*
Ga0066660_104334662	3300006800	Soil	MRRLRLGSGPGMTVPRLDDSPIPPVSPDRRRRAALIVCGRAGDRESARTVLEALGLIDDPAVAGALESMA*
Ga0079220_118906882	3300006806	Agricultural Soil	MTVPRLDDSPIPPVSDELRRRAALVVCSRADDRDTARLLLDALGLLDDPVVHRAG*
Ga0105242_101269116	3300009176	Miscanthus Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLDALGLLDDPEIRRH*
Ga0105242_119433241	3300009176	Miscanthus Rhizosphere	MTVPRLDDSPIPPISAERRRRAALVVCGRADDRESARLLLDALGLLDDPDVRPTRSA*
Ga0105237_101625123	3300009545	Corn Rhizosphere	MTVPRLDDSPIPPISADRRRRAALVVCGRAEDRDVARLLLDALGLLDDPDVRRRAS*
Ga0105238_119104793	3300009551	Corn Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLDALGLLDDPALRQ
Ga0105238_125208251	3300009551	Corn Rhizosphere	MTVPRLDDSPIPPVSADCRRKAALVICGRAGDHESARMLLDALGLL
Ga0126318_101485141	3300010152	Soil	DDSPIIPVSDEQRRRAALVVCGRASDRDTAREILDALGLLTDPAVTCRPTPVG*
Ga0126318_101566061	3300010152	Soil	DDSPIIPVSDEQRRRAALVVCGRAGDRDTARDILDALGLLTDPAVTRRPTPVG*
Ga0126318_101598491	3300010152	Soil	LDDSPIPPVSADRRRRAAIIVCGRADDRDEARLLLDALGLLEDPEIRRTTSAA*
Ga0126318_101772301	3300010152	Soil	LDDSPIPPVSADCRRKAALVICGRAGDHESARLLLDALGLLDDPEIRPR*
Ga0126318_111475212	3300010152	Soil	RLDDSPIPPVTPDRRRRAALVVCGRAEDRDAARLLLDALGLLDDPEIRR*
Ga0134063_107535521	3300010335	Grasslands Soil	MTVPRLDDSPIPPVSADRRRRAALVVCGRADDRDAARMLLDALGLLDDPEIR
Ga0134126_113835272	3300010396	Terrestrial Soil	MTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPDIRGRRAT*
Ga0105246_116862781	3300011119	Miscanthus Rhizosphere	PRLDDSPIPPVSPDRRRQAALVVCGRAGDRDSARTVLEALGLIDDPAIAGALEAMSR*
Ga0150985_1071273802	3300012212	Avena Fatua Rhizosphere	LTLPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLEDPDIRQH*
Ga0150985_1230706951	3300012212	Avena Fatua Rhizosphere	MTVPRLDDSPIPTISDERRRRAALVVCGRAGDPESARIVLEALGLIDDPALVQPN*
Ga0150984_1023285231	3300012469	Avena Fatua Rhizosphere	SRLDDSPIPPVSPDRRRRAALVVCGRAGDRDSARTVLEALGLIDDPAVAGALDGLV*
Ga0150984_1086638931	3300012469	Avena Fatua Rhizosphere	RLDDSPIPTISDERRRRAALVVCGRAGDPESARIVLEALGLIDDPALVQPN*
Ga0150984_1107140481	3300012469	Avena Fatua Rhizosphere	MEGVTNYHVGSRSGMTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPDIRQH*
Ga0150984_1117814631	3300012469	Avena Fatua Rhizosphere	PVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPDIRRAG*
Ga0134087_102383951	3300012977	Grasslands Soil	PIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPEIKRSH*
Ga0157373_103372973	3300013100	Corn Rhizosphere	MTVPRLDDSPIPSISPDRRRQAALVVCGRAGDRESARTVLEALGLIDDPAVAGTLDAMG*
Ga0157369_1000058517	3300013105	Corn Rhizosphere	MTVPRLDDSPIPPVSPDRRRRAAIVVCGRAGDRDAARLLLEALGLLDDPEIRR*
Ga0157369_102417053	3300013105	Corn Rhizosphere	MRMTVPRLDDSPIPPISADRRRRAALVVCGRAEDREAARLLLDALGLLDDPDVRGRAS*
Ga0157369_102537183	3300013105	Corn Rhizosphere	MTVPRLDDSPIPPVSPDRRRRAALVVCGRAGDSESARTVLEALGLIDDPAIAGALESIALRLP*
Ga0157369_108135283	3300013105	Corn Rhizosphere	MTVPRLDDSPIPPVSPDRRRQAALVVCGRAGDRESARTVLEALGLIDDPASAGTLEAMG*
Ga0157374_108646003	3300013296	Miscanthus Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCGRADDRDSARLLLEALGLLDDPESRRR*
Ga0157372_120188111	3300013307	Corn Rhizosphere	QMGSAPRMTVPRLDDSPIPPVSPDRRRQAALVVCGRAGDRDSARTVLEALGLIDDPAIAGTLEAMR*
Ga0157372_129623901	3300013307	Corn Rhizosphere	MTVPRLDDSPIPPVSPDRRRQAALVVCGRAGDRDSARTVLEALGLIDDPAIAGTLEA
Ga0157372_130832272	3300013307	Corn Rhizosphere	MTVPRLDDSPIPPVSDELRRRAALVVCSRADDRDTARLLLDALGLLDDPVVHRAS*
Ga0157372_134672781	3300013307	Corn Rhizosphere	MTVPRLDDSPIPPVSPDRRRQAALVVCGRAGDPESARTVLEALGLIDDPAIAGTLEAMG*
Ga0134072_101799831	3300015357	Grasslands Soil	SPIPPVSDELRRRAALVVCSRADDRESARLLLDALGLLDDPSITRRAS*
Ga0132258_101959126	3300015371	Arabidopsis Rhizosphere	MTPAYVGSGDRMTVPRLDDSPIPSISPDRRRQAALVVCGRAGDRESARTVLEALGLIDDPAVAGTLEAMG*
Ga0132258_103051687	3300015371	Arabidopsis Rhizosphere	MTVPRLDDSPIPPVSPDRRRQAALVVCGRAGDRESARTVLEALGLIDDPAIAGALEAMG*
Ga0132258_109432104	3300015371	Arabidopsis Rhizosphere	MTVPRLDDSPIPPVSPDRRRQAALVVCGRAGDRDSARTVLEALGLIDDPAIAGTLEAMSR
Ga0132258_128406422	3300015371	Arabidopsis Rhizosphere	MTVPRLDDSPIPSISPDRRRRAALVVCGRAGDRESARTVLEALGLIDDPAIAGALEAMG*
Ga0132257_1028711401	3300015373	Arabidopsis Rhizosphere	MTVPRLDDSPIPSISPDRRRRAALVVCGRAGDLESAHTVLEALGLIDDPAIAGALEAMG*
Ga0066655_113517202	3300018431	Grasslands Soil	LGSGPGMTVPRLDDSPIPPVSPDRRRRAALIVCGRAGDRESARTVLEALGLIDDPAVAGALESMA
Ga0066667_100452715	3300018433	Grasslands Soil	MGGVTDGYGGSRSGMTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPEIKRSH
Ga0066667_111082092	3300018433	Grasslands Soil	MTVPRLDDSPIPPVSPDRRRRAALIVCGRAGDRESARTVLEALGLIDDPAVAGALESMA
Ga0066662_100034343	3300018468	Grasslands Soil	MTVPRLDDSPIPPMPAERRRRAALVVCGRAGDRDSARMLLEALGLLDDPDIRS
Ga0066662_101620911	3300018468	Grasslands Soil	MTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPDIRQAG
Ga0197907_103142522	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	SGMTVPRLDDSPIPPVTPDRRRRAALVVCGRAEDRDAARLLLDALGLLDDPEIRR
Ga0197907_104107802	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPRLDDSPIPLISPERRRRAALVVCGRAGDRESARTVLEALGLIDDPAVAGTLEAMG
Ga0197907_104926782	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	RLDDSPIPPVSDDMRRRAALVVCSRADDRDSARLLLEALGLLDDPVVRRAS
Ga0197907_104985141	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	LDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPEIRRH
Ga0197907_106005992	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	VPRLDDSPIPPVSPDRRRRAAIVVCGRAGDRDAARLLLEALGLLDDPEIRR
Ga0197907_106425881	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	DDSPIPPVSDDQRRRAALVVCSRADDRDSARLLLEALGLLTDPAVTGQASRAS
Ga0197907_106501751	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	VGSRTGMTVPRLDDSPIPPVSADRRRRAALVVCSRAGDHDSARMLLDALGLLDDPDIRS
Ga0197907_107473031	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	RTRMTVPRLDDSPIPPVSADRRRRAALVVCGRAGDQDSARLLLDVLGLLDDPDVVSLVRR
Ga0206356_101735761	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	SGDRMTVPRLDDSPIPAISPDRRRRAALVVCGRAGDRESAKTVLEALGLIDDPAIAGALDRMG
Ga0206356_107500621	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	RLDDSPIPPVSPDRRRQAALVVCGRAGDRESARTVLEALGLIDDPAIAGTLEAMG
Ga0206356_113268132	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCSRAGDHDSARMLLDALGLLDDPDIRS
Ga0206356_116078871	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCGRAGDQDSARLLLDVLGLLDDPDVVSLVRR
Ga0206349_11519061	3300020075	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPRLDDSPIPPISADRRRRAALVVCGRAEDRESARLLLEALGLLDDPDVRRRAS
Ga0206349_13222942	3300020075	Corn, Switchgrass And Miscanthus Rhizosphere	LGSGPRMTVPRLDDSPIPPVSPDRRRRAALVVCGRAGDSESARTVLEALGLIDDPAIAGALESIALRLP
Ga0206349_18861732	3300020075	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPRLDDSPIPPVSPDRRRRAAIVVCGRAGDRDAARLLLEALGLLDDPEIRR
Ga0206351_101256392	3300020077	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPRLDDSPIPPVTPDRRRRAALVVCGRAEDRDAARLLLDALGLLDDPEIRR
Ga0206351_104694101	3300020077	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPRLDDSPIPAISPDRRRQAALVVCGRAGDRESARTVLEALGLIDDPAIAGTLEAMG
Ga0206352_102387951	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	RTRMTVPRLDDSPIPAISPDRRRQAALVVCGRAGDRESARTVLEALGLIDDPAIAGTLEAMG
Ga0206352_103662513	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	LDDSPIPPISSDRRRRAALVVCGRADDRESARLILDALGLLDDPEVVGDRNRPGRL
Ga0206350_104035241	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	RLDDSPIPPVTPDRRRRAALVVCGRAEDRDAARLLLDALGLLDDPEIRR
Ga0206354_102265631	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPRLDDSPIPPVSDDMRRRAALVVCSRADDRDSARLLLEALGLLDDPVVRRAS
Ga0206354_107513662	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPEIRRH
Ga0206354_113604323	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	RLDDSPIPPVSADCRRKAALVICGRAGDNESARLLLDALGLLDDPEIRSR
Ga0206353_107125052	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	LDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPEIRRAG
Ga0206353_107502742	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	SGMTVPRLDDSPIPPVSPDRRRRAAIVVCGRAGDRDAARLLLEARGLLDDPEIRR
Ga0206353_108713663	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	DDSPIPPVTPDRRRRAALVVCGRAEDRDAARLLLDALGLLDDPEIRR
Ga0206353_111081622	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPRLDDSPIPAISPDRRRRAALVVCGRAGDRDSARTVLEALGLMDDPAIAGTLEAMT
Ga0206353_114570761	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	PRLDDSPIPLISPERRRRAALVVCGRAGDRESARTVLEALGLIDDPAVAGTLEAMG
Ga0154015_16425601	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	TRMTVPRLDDSPIPAISPDRRRQAALVVCGRAGDRESARTVLEALGLIDDPAIAGTLEAM
Ga0213874_102809981	3300021377	Plant Roots	MSRVRVGRRLRMTVPRLDDSPIPPISADRRRRAALVVCGRAEDRESARLLLEALGLLDDPDVRRKAS
Ga0213880_102264502	3300021953	Exposed Rock	MTVPRLDDSPIPPISADRRRRAALVVCGRAEDRESARLLLEALGLLDDPDVRRKAS
Ga0224712_100063643	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPRLDDSPIPPISPDRRRRAALVVCGRAEDRESARLLLDALGLLDDPEVRGRS
Ga0224712_105369272	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	DDSPIPPVSDELRRRAALVVCSRADDRDTARLLLDALGLLDDLVVHRAS
Ga0224712_105377221	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPRLDDSPIPPVSADCRRKAALVICGRAGDHESARMLLDALGLLDDPEIRSR
Ga0224712_105404582	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPRLDDSPIPPVSVDCRRKAALVICGRAGDHESARLILDALGLLDDPEIRSR
Ga0224712_106382142	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	LDDSPIPPVSPDRRRRAALVVCGRAGDSESARTVLEALGLIDDPAIAGALESIALRLP
Ga0207680_109308231	3300025903	Switchgrass Rhizosphere	MTVPRLDDSPIPPISAERRRRAALVVCGRADDRESARLLLDALGLLDDPDVRPTRSA
Ga0207705_101179003	3300025909	Corn Rhizosphere	MTVPRLDDSPIPPVSDELRRRAALVVCSRADDRDTARLLLDALGLLDDLVVHRAS
Ga0207705_101432483	3300025909	Corn Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPEIRRAG
Ga0207705_101512633	3300025909	Corn Rhizosphere	MTVPRLDDSPIPPISADRRRRAALVVCGRADDRESARLLLDALGLLDDPDVRRARPS
Ga0207705_101641522	3300025909	Corn Rhizosphere	MTVPRLDDSPIPPVPAERRRRAALVVCGRAGDNDSARLLLEALGLLDDPEIRPRR
Ga0207705_112991152	3300025909	Corn Rhizosphere	MGGVTAARVGSRSGMTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPDIRRAG
Ga0207707_103473254	3300025912	Corn Rhizosphere	MTVPRLDDSPIPPVSDELRRRAALVVCSRADDRDSARLLLDALGLLDDPSVTKRAG
Ga0207707_110214051	3300025912	Corn Rhizosphere	MTVPRLDDSPIPPVSPDRRRQAALVVCGRAGDRDSARTVLEALGLIDDPAIAGTLETMKA
Ga0207707_115139582	3300025912	Corn Rhizosphere	MTPPYVGSGDRMTVPRLDDSPIPSISPDRRRQAALVVCGRAGDRESARTVLEALGLIDDP
Ga0207671_103189862	3300025914	Corn Rhizosphere	MTVPRLDDSPIPPISADRRRRAALVVCGRAEDRDVARLLLDALGLLDDPDVRRRAS
Ga0207657_101601873	3300025919	Corn Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCGRAEDQESARLLLDALGLLDDPDVRRKAS
Ga0207652_104505743	3300025921	Corn Rhizosphere	MTVPRLDDSPIPPVSADCRRKAALVICGRAGDNESARLLLDALGLLDDPEIRSR
Ga0207652_105709663	3300025921	Corn Rhizosphere	SGDRMTVPRLDDSPIPAISPDRRRRAALVVCGRAGDRESAKTVLEALGLIDDPAIAGALDRMS
Ga0207652_107089833	3300025921	Corn Rhizosphere	MTVPRLDDSPIPPVTPDRRRRAALVVCGRAEDRDAARLLLDALGL
Ga0207652_109319961	3300025921	Corn Rhizosphere	MTVPRLDDSPIPSISPDRRRQAALVVCGRAGDRESARTVLEALGLIDDPAVAGTLDAMG
Ga0207652_109388852	3300025921	Corn Rhizosphere	MTVPRLDDSPIPPVSPDRRRQAALVVCGRAGDRDSARTVLEALGLIDDPAIAGTLEAMG
Ga0207687_110937692	3300025927	Miscanthus Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLDALGLLDDPEIRQR
Ga0207700_119014202	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPRLDDSPIPPVSDELRRRAALVVCSRADDRDSARLLLDALGLLDDPVVNRRAG
Ga0207664_113609242	3300025929	Agricultural Soil	MGGVTAAGVGSRSGMTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPDIKGRRAN
Ga0207664_119003642	3300025929	Agricultural Soil	MTVPRLDDSPIPPVSADRRRRAAIVVCGRAGDRDDARLLLDALGLLDDPDIRS
Ga0207690_101759254	3300025932	Corn Rhizosphere	TVPRLDDSPIPPISADRRRRAALVVCGRADDRESARLLLDALGLLDDPDVRRARPS
Ga0207686_114451371	3300025934	Miscanthus Rhizosphere	VTWGSRSGMTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPEIRRH
Ga0207689_107003293	3300025942	Miscanthus Rhizosphere	PVSADRRRRAALVVCGRAEDQESARLLLDALGLLDDPDVRRKAS
Ga0207661_108127961	3300025944	Corn Rhizosphere	MTVPRLDDSPIPPVSADRRRRAALVVCGRADDRDSARLLLEALGLLDDPEIRRR
Ga0209577_107796482	3300026552	Soil	MTVPRLDDSPIPPVSADRRRRAALVVCSRADDRDSARLLLEALGLLDDPEIKRAG
Ga0209796_100629353	3300027766	Agave	MTVPRLDDSPIPPVSADRRRRAALVVCGRADDRDSARMLLDALGLLDDPEIRR
Ga0209796_100769492	3300027766	Agave	VTRGSRSGMTVPRLDDSPIPPVSADRRRQAALVVCSRADDRDSARLLLEALGLLDDPEIRRH
Ga0308175_1001782823	3300031938	Soil	MTVPRLDDSPIPPVSEDRRRRAALVVCGRAEDRESARTLLEALGLLDDPAVVGARH
Ga0308175_1001973654	3300031938	Soil	MTVPRLDDSPIPPVSPDRRRQAALVVCGRAGDRDSARTVLEALGLIDDPAIAGTLETMNA
Ga0308175_1001989193	3300031938	Soil	MTVPRLDDSPIPPVSDDMRRRAALVVCSRADDRDTARLLLDALGLLDDPVVRRAS
Ga0308175_1003505801	3300031938	Soil	MTVPRLDDSPIPPVSDELRRRAALVVCSRADDRESARLLLDALGLLDDPSVTKRAG
Ga0308176_100896164	3300031996	Soil	MTVPRLDDSPIPAISEDRRRRAALVVCGRAGDPESARIVLEALGLIDDPALVQPN
Ga0308176_109819582	3300031996	Soil	MTVPRLDDSPIPPVSDELRRRAALVVCSRADDRDTARLLLDALGLLDDPVVHRAG
Ga0308173_118006502	3300032074	Soil	MTVPRLDDSPIPPVSDELRRRAALVVCSRADDRDTARLLLDALGLLD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F033730

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences