NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F029266

Metagenome / Metatranscriptome Family F029266

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F029266
Family Type Metagenome / Metatranscriptome
Number of Sequences 189
Average Sequence Length 57 residues
Representative Sequence VDQAGIVTIIDEALERFASRDLVGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH
Number of Associated Samples 154
Number of Associated Scaffolds 189

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 77.72 %
% of genes near scaffold ends (potentially truncated) 31.22 %
% of genes from short scaffolds (< 2000 bps) 91.53 %
Associated GOLD sequencing projects 149
AlphaFold2 3D model prediction Yes
3D model pTM-score0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (66.138 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland
(8.995 % of family members)
Environment Ontology (ENVO) Unclassified
(14.286 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(47.090 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 49.41%    β-sheet: 0.00%    Coil/Unstructured: 50.59%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.59
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 189 Family Scaffolds
PF01592NifU_N 16.93
PF01471PG_binding_1 6.35
PF03734YkuD 5.82
PF00266Aminotran_5 3.70
PF08448PAS_4 3.17
PF12833HTH_18 1.06
PF02687FtsX 0.53
PF13185GAF_2 0.53
PF00300His_Phos_1 0.53
PF04392ABC_sub_bind 0.53
PF01475FUR 0.53
PF07077DUF1345 0.53
PF12867DinB_2 0.53
PF14681UPRTase 0.53
PF00005ABC_tran 0.53
PF00174Oxidored_molyb 0.53

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 189 Family Scaffolds
COG0822Fe-S cluster assembly scaffold protein IscU, NifU familyPosttranslational modification, protein turnover, chaperones [O] 16.93
COG1376Lipoprotein-anchoring transpeptidase ErfK/SrfKCell wall/membrane/envelope biogenesis [M] 5.82
COG3034Murein L,D-transpeptidase YafKCell wall/membrane/envelope biogenesis [M] 5.82
COG0735Fe2+ or Zn2+ uptake regulation protein Fur/ZurInorganic ion transport and metabolism [P] 0.53
COG2041Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductasesEnergy production and conversion [C] 0.53
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 0.53
COG3915Uncharacterized conserved proteinFunction unknown [S] 0.53
COG4291Uncharacterized membrane proteinFunction unknown [S] 0.53


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A66.14 %
All OrganismsrootAll Organisms33.86 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2124908032|Perma_A_C_ConsensusfromContig61633Not Available897Open in IMG/M
2124908043|A2_c1_ConsensusfromContig10685Not Available613Open in IMG/M
2170459006|GBPF9FW02GM79BNot Available509Open in IMG/M
3300000363|ICChiseqgaiiFebDRAFT_13901152Not Available649Open in IMG/M
3300001417|JGI20196J14858_1014545Not Available658Open in IMG/M
3300001686|C688J18823_10113297All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1883Open in IMG/M
3300002568|C688J35102_118202206Not Available538Open in IMG/M
3300002568|C688J35102_120576344All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1199Open in IMG/M
3300002568|C688J35102_120745292Not Available1470Open in IMG/M
3300003465|P52013CM_1029052All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales1588Open in IMG/M
3300004081|Ga0063454_100197820Not Available1137Open in IMG/M
3300004114|Ga0062593_100191105All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1617Open in IMG/M
3300004114|Ga0062593_100893807All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria897Open in IMG/M
3300004463|Ga0063356_100599288All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1488Open in IMG/M
3300004479|Ga0062595_100822856Not Available769Open in IMG/M
3300004479|Ga0062595_101159537All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales682Open in IMG/M
3300004479|Ga0062595_101253685All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300004479|Ga0062595_102633674All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter → Ilumatobacter nonamiensis505Open in IMG/M
3300004643|Ga0062591_100124673All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1732Open in IMG/M
3300005093|Ga0062594_101613959All Organisms → cellular organisms → Bacteria672Open in IMG/M
3300005167|Ga0066672_10623128Not Available698Open in IMG/M
3300005176|Ga0066679_10617364All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales707Open in IMG/M
3300005187|Ga0066675_10605958All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria823Open in IMG/M
3300005332|Ga0066388_102457642All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria946Open in IMG/M
3300005337|Ga0070682_101155244All Organisms → cellular organisms → Bacteria651Open in IMG/M
3300005434|Ga0070709_10440236Not Available980Open in IMG/M
3300005434|Ga0070709_10529361Not Available899Open in IMG/M
3300005436|Ga0070713_100286030All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1514Open in IMG/M
3300005436|Ga0070713_100796059All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales906Open in IMG/M
3300005440|Ga0070705_101532384Not Available559Open in IMG/M
3300005455|Ga0070663_101046439Not Available711Open in IMG/M
3300005548|Ga0070665_101253709All Organisms → cellular organisms → Bacteria752Open in IMG/M
3300005549|Ga0070704_100717908Not Available888Open in IMG/M
3300005574|Ga0066694_10323516All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria733Open in IMG/M
3300005764|Ga0066903_100962197All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1555Open in IMG/M
3300005764|Ga0066903_101523204All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1264Open in IMG/M
3300005764|Ga0066903_103492230Not Available847Open in IMG/M
3300006028|Ga0070717_11762700Not Available560Open in IMG/M
3300006038|Ga0075365_11115490All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria555Open in IMG/M
3300006046|Ga0066652_100540905All Organisms → cellular organisms → Bacteria1089Open in IMG/M
3300006047|Ga0075024_100079799All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter1407Open in IMG/M
3300006047|Ga0075024_100392507All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales704Open in IMG/M
3300006057|Ga0075026_100162120Not Available1154Open in IMG/M
3300006057|Ga0075026_100412532All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria762Open in IMG/M
3300006057|Ga0075026_100816613All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter → Ilumatobacter nonamiensis567Open in IMG/M
3300006162|Ga0075030_101500046All Organisms → cellular organisms → Bacteria528Open in IMG/M
3300006163|Ga0070715_10105707All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter1320Open in IMG/M
3300006172|Ga0075018_10366148Not Available726Open in IMG/M
3300006580|Ga0074049_12909349All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300006641|Ga0075471_10009675All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC262075946Open in IMG/M
3300006755|Ga0079222_11785865All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter594Open in IMG/M
3300006794|Ga0066658_10635284All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales584Open in IMG/M
3300006797|Ga0066659_11373517All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria590Open in IMG/M
3300006854|Ga0075425_100789190All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1089Open in IMG/M
3300006854|Ga0075425_102501049All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria572Open in IMG/M
3300006865|Ga0073934_10373739All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria885Open in IMG/M
3300006917|Ga0075472_10621767All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria541Open in IMG/M
3300007004|Ga0079218_11305144All Organisms → cellular organisms → Bacteria765Open in IMG/M
3300009012|Ga0066710_100984480Not Available1301Open in IMG/M
3300009012|Ga0066710_104765024Not Available507Open in IMG/M
3300009094|Ga0111539_10459736Not Available1482Open in IMG/M
3300009148|Ga0105243_11678640Not Available664Open in IMG/M
3300009174|Ga0105241_10939016Not Available806Open in IMG/M
3300010337|Ga0134062_10735048Not Available522Open in IMG/M
3300010362|Ga0126377_10173376Not Available2046Open in IMG/M
3300010396|Ga0134126_11904295Not Available651Open in IMG/M
3300010398|Ga0126383_12113397Not Available650Open in IMG/M
3300010857|Ga0126354_1045744Not Available590Open in IMG/M
3300010862|Ga0126348_1164475Not Available567Open in IMG/M
3300010865|Ga0126346_1298682Not Available507Open in IMG/M
3300010880|Ga0126350_11897831All Organisms → cellular organisms → Bacteria12624Open in IMG/M
3300012202|Ga0137363_10963902Not Available724Open in IMG/M
3300012212|Ga0150985_105350029All Organisms → cellular organisms → Bacteria1008Open in IMG/M
3300012212|Ga0150985_108986121All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1771Open in IMG/M
3300012212|Ga0150985_119008212Not Available703Open in IMG/M
3300012212|Ga0150985_121099741All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1125Open in IMG/M
3300012469|Ga0150984_108377994Not Available530Open in IMG/M
3300012469|Ga0150984_118865348Not Available556Open in IMG/M
3300012469|Ga0150984_122529471Not Available566Open in IMG/M
3300012913|Ga0157298_10378904Not Available531Open in IMG/M
3300012923|Ga0137359_10571162Not Available994Open in IMG/M
3300012931|Ga0153915_10149785Not Available2527Open in IMG/M
3300012943|Ga0164241_10589369Not Available804Open in IMG/M
3300012958|Ga0164299_11512047Not Available524Open in IMG/M
3300012960|Ga0164301_11590308Not Available542Open in IMG/M
3300012977|Ga0134087_10643745Not Available555Open in IMG/M
3300012989|Ga0164305_11914888Not Available539Open in IMG/M
3300013296|Ga0157374_12401273Not Available554Open in IMG/M
3300014166|Ga0134079_10577902Not Available555Open in IMG/M
3300014301|Ga0075323_1147937Not Available538Open in IMG/M
3300014322|Ga0075355_1003070All Organisms → cellular organisms → Bacteria3289Open in IMG/M
3300014498|Ga0182019_10670640All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria733Open in IMG/M
3300014745|Ga0157377_10929198Not Available653Open in IMG/M
3300015077|Ga0173483_10652620Not Available587Open in IMG/M
3300015087|Ga0167637_1023661Not Available874Open in IMG/M
3300015360|Ga0163144_10365643All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC262561758Open in IMG/M
3300016341|Ga0182035_11902464Not Available540Open in IMG/M
3300016371|Ga0182034_11371404Not Available618Open in IMG/M
3300016387|Ga0182040_11875205Not Available514Open in IMG/M
3300017944|Ga0187786_10209616Not Available746Open in IMG/M
3300017944|Ga0187786_10357992Not Available619Open in IMG/M
3300017944|Ga0187786_10586038Not Available521Open in IMG/M
3300017947|Ga0187785_10739786Not Available519Open in IMG/M
3300017959|Ga0187779_10245108Not Available1133Open in IMG/M
3300017959|Ga0187779_10366607Not Available933Open in IMG/M
3300017959|Ga0187779_10390134Not Available906Open in IMG/M
3300017959|Ga0187779_10570657Not Available755Open in IMG/M
3300017973|Ga0187780_10822704Not Available673Open in IMG/M
3300017974|Ga0187777_10057510All Organisms → cellular organisms → Bacteria2509Open in IMG/M
3300017974|Ga0187777_10370819Not Available987Open in IMG/M
3300017974|Ga0187777_10490297Not Available858Open in IMG/M
3300018029|Ga0187787_10353898Not Available567Open in IMG/M
3300018029|Ga0187787_10495782Not Available500Open in IMG/M
3300018060|Ga0187765_10363390Not Available885Open in IMG/M
3300018060|Ga0187765_11069678Not Available558Open in IMG/M
3300018064|Ga0187773_10979234All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium553Open in IMG/M
3300018468|Ga0066662_11386300Not Available726Open in IMG/M
3300018469|Ga0190270_10993779Not Available865Open in IMG/M
3300018482|Ga0066669_10067614All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2346Open in IMG/M
3300019279|Ga0184642_1117148Not Available1275Open in IMG/M
3300020057|Ga0163151_10061535All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2636Open in IMG/M
3300020080|Ga0206350_11305256Not Available517Open in IMG/M
3300021860|Ga0213851_1641188Not Available605Open in IMG/M
3300022525|Ga0242656_1105506Not Available557Open in IMG/M
3300025310|Ga0209172_10420693All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria632Open in IMG/M
3300025901|Ga0207688_10941689Not Available547Open in IMG/M
3300025919|Ga0207657_11195740Not Available578Open in IMG/M
3300025927|Ga0207687_10827817Not Available790Open in IMG/M
3300025928|Ga0207700_10338890All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC262561307Open in IMG/M
3300025928|Ga0207700_10540131Not Available1034Open in IMG/M
3300025937|Ga0207669_11234841Not Available634Open in IMG/M
3300025939|Ga0207665_11395740All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300026035|Ga0207703_10419168All Organisms → cellular organisms → Bacteria1245Open in IMG/M
3300026035|Ga0207703_11215569Not Available724Open in IMG/M
3300026089|Ga0207648_11492789Not Available635Open in IMG/M
3300026118|Ga0207675_101739053Not Available643Open in IMG/M
3300026300|Ga0209027_1028891All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC262562100Open in IMG/M
3300026312|Ga0209153_1129964Not Available953Open in IMG/M
3300027079|Ga0255188_1012793Not Available1882Open in IMG/M
3300027894|Ga0209068_10530068Not Available681Open in IMG/M
3300027903|Ga0209488_10262042Not Available1295Open in IMG/M
3300027908|Ga0209006_10967685Not Available679Open in IMG/M
(restricted) 3300027997|Ga0255057_10370647Not Available694Open in IMG/M
3300028066|Ga0255200_1057418Not Available545Open in IMG/M
3300028379|Ga0268266_10732402Not Available954Open in IMG/M
3300028573|Ga0265334_10040452All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC262561826Open in IMG/M
3300028577|Ga0265318_10182057Not Available769Open in IMG/M
3300028577|Ga0265318_10373567Not Available520Open in IMG/M
3300028592|Ga0247822_11280446Not Available614Open in IMG/M
3300028800|Ga0265338_10252510All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC262561300Open in IMG/M
3300029984|Ga0311332_11122185Not Available633Open in IMG/M
3300029984|Ga0311332_11375821Not Available571Open in IMG/M
3300029990|Ga0311336_11913450Not Available525Open in IMG/M
3300030838|Ga0311335_11241401Not Available535Open in IMG/M
3300031092|Ga0308204_10362872Not Available501Open in IMG/M
3300031228|Ga0299914_10038173All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4055Open in IMG/M
3300031232|Ga0302323_102967513Not Available541Open in IMG/M
3300031239|Ga0265328_10251672Not Available676Open in IMG/M
3300031240|Ga0265320_10386632Not Available618Open in IMG/M
3300031344|Ga0265316_10529842Not Available840Open in IMG/M
3300031547|Ga0310887_10171865All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC262561155Open in IMG/M
3300031682|Ga0318560_10701031Not Available547Open in IMG/M
3300031711|Ga0265314_10531352Not Available615Open in IMG/M
3300031726|Ga0302321_102317313Not Available626Open in IMG/M
3300031740|Ga0307468_102198646Not Available534Open in IMG/M
3300031751|Ga0318494_10523120Not Available692Open in IMG/M
3300031858|Ga0310892_10145015All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC262561369Open in IMG/M
3300031893|Ga0318536_10695868Not Available506Open in IMG/M
3300031913|Ga0310891_10235574Not Available627Open in IMG/M
3300031918|Ga0311367_11769815Not Available601Open in IMG/M
3300031954|Ga0306926_11346388Not Available831Open in IMG/M
3300031965|Ga0326597_12215779All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria502Open in IMG/M
3300032002|Ga0307416_103862980Not Available502Open in IMG/M
3300032013|Ga0310906_10921719Not Available624Open in IMG/M
3300032018|Ga0315272_10743691Not Available501Open in IMG/M
3300032061|Ga0315540_10207698Not Available845Open in IMG/M
3300032256|Ga0315271_10516734Not Available1014Open in IMG/M
3300032261|Ga0306920_102381353Not Available731Open in IMG/M
3300032770|Ga0335085_10007483All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia16911Open in IMG/M
3300032805|Ga0335078_11488800Not Available758Open in IMG/M
3300033290|Ga0318519_11005380Not Available518Open in IMG/M
3300033407|Ga0214472_10611992All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces999Open in IMG/M
3300033433|Ga0326726_11393250Not Available682Open in IMG/M
3300033550|Ga0247829_10317427All Organisms → cellular organisms → Bacteria1268Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland8.99%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.29%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.76%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil4.76%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds4.23%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere4.23%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen3.70%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil3.17%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.65%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil2.65%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.12%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere2.12%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.12%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere2.12%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil2.12%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil1.59%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.59%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.59%
Freshwater Microbial MatEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat1.06%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment1.06%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater1.06%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous1.06%
Hot Spring SedimentEnvironmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment1.06%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.06%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.06%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Soil1.06%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil1.06%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.06%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands1.06%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.06%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.06%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.06%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.06%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.53%
WatershedsEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds0.53%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.53%
Salt Marsh SedimentEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment0.53%
SeawaterEnvironmental → Aquatic → Marine → Gulf → Unclassified → Seawater0.53%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.53%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.53%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.53%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.53%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.53%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.53%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.53%
Ore Pile And Mine Drainage Contaminated SoilEnvironmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil0.53%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.53%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen0.53%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.53%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.53%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.53%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.53%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.53%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.53%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere0.53%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.53%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.53%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.53%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2065487018Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
2124908032Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_allEnvironmentalOpen in IMG/M
2124908043Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2EnvironmentalOpen in IMG/M
2170459006Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cmEnvironmentalOpen in IMG/M
3300000363Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300001417Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012EnvironmentalOpen in IMG/M
3300001686Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300003465Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P5 sampleEnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005873Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006038Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5Host-AssociatedOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006047Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013EnvironmentalOpen in IMG/M
3300006057Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006580Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006641Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006865Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaGEnvironmentalOpen in IMG/M
3300006917Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010857Boreal forest soil eukaryotic communities from Alaska, USA - W1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010862Boreal forest soil eukaryotic communities from Alaska, USA - C4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010865Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010880Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012913Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2EnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300012943Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)EnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300014301Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D1EnvironmentalOpen in IMG/M
3300014322Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D1EnvironmentalOpen in IMG/M
3300014498Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaGEnvironmentalOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300015077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)EnvironmentalOpen in IMG/M
3300015087Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6A, Proglacial plain, adjacent to northern proglacial tributary)EnvironmentalOpen in IMG/M
3300015360Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1EnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300017944Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MGEnvironmentalOpen in IMG/M
3300017947Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MGEnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300018029Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MGEnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018064Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019279Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020057Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP5.IB-2EnvironmentalOpen in IMG/M
3300020080Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300021860Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022525Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025310Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025901Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)Host-AssociatedOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026300Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026312Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)EnvironmentalOpen in IMG/M
3300027079Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepB_8hEnvironmentalOpen in IMG/M
3300027894Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300027997 (restricted)Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_6EnvironmentalOpen in IMG/M
3300028066Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Atlam_RepB_8hEnvironmentalOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028573Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaGHost-AssociatedOpen in IMG/M
3300028577Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaGHost-AssociatedOpen in IMG/M
3300028592Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30EnvironmentalOpen in IMG/M
3300028800Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaGHost-AssociatedOpen in IMG/M
3300029984I_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300029990I_Fen_N2 coassemblyEnvironmentalOpen in IMG/M
3300030838I_Fen_N1 coassemblyEnvironmentalOpen in IMG/M
3300031092Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031228Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57EnvironmentalOpen in IMG/M
3300031232Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3EnvironmentalOpen in IMG/M
3300031239Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaGHost-AssociatedOpen in IMG/M
3300031240Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaGHost-AssociatedOpen in IMG/M
3300031344Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaGHost-AssociatedOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031711Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaGHost-AssociatedOpen in IMG/M
3300031726Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031893Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28EnvironmentalOpen in IMG/M
3300031913Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4EnvironmentalOpen in IMG/M
3300031918III_Fen_N3 coassemblyEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031965Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185EnvironmentalOpen in IMG/M
3300032002Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3Host-AssociatedOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032018Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middleEnvironmentalOpen in IMG/M
3300032061Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-10EnvironmentalOpen in IMG/M
3300032256Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_topEnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M
3300033407Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175EnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GPINP_030827502065487018SoilMDRPGIVSFIDEAIERFALRERVSTAEVVDFLLDLRSVVVSDEALRNLLEEEAQPAG
Perma_A_C_026117602124908032SoilMDQAGIVTLIDEALERFAGRDIVSSAEVLDLLLDMRSAAVSDAAIAALIDAEAQPAH
A2_c1_008660402124908043SoilIVTIIDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH
L01_007488602170459006Grass SoilQDQEDTMDQAGIVTLIDEALERFAARDLVSSTEVVDLLLDMRTAAVSDAELAALIDSEAQPAH
ICChiseqgaiiFebDRAFT_1390115223300000363SoilMDQAGLVTMIDEALERFASRDLVSAAEIVDFLLDFRSAVVSDAAIAALLEAESQPAG*
JGI20196J14858_101454523300001417Arctic Peat SoilVDQAGIVTFIDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH*
C688J18823_1011329733300001686SoilMHTQTQEDEMDQAGIVTLIDEALERFAGRDLVSSTEVLDLLLDMRSAAFSDAELAALIDSEAQPAH*
C688J35102_11820220613300002568SoilMDQAGIVTLIDEALERFAGRDLVSSTEVVDLLLDMRSAAVSDAELAALIDSEAQPAH*
C688J35102_12057634423300002568SoilMDQAGIVTMIDEALERFASRDLLSASEIVDFLLDLRSAVVSDAALAALIESETETVG*
C688J35102_12074529223300002568SoilMDQAGVVNIIDEALERFSSRDLIAASEVVDFLLDLRSAVVSDAALAALIDAETQPTH*
P52013CM_102905233300003465Ore Pile And Mine Drainage Contaminated SoilMDQAGLVTVIDEALERFAGRDLVSSGEIVDFLLDLRSAVVSDAALAALIEAESQPTG*
Ga0063454_10019782023300004081SoilMDQAGIVTIIDEALERFAARDVIRSSEMVDFLLDLRSAVVSDAALAALIESEAQPAH*
Ga0062593_10019110523300004114SoilMDQAGIVMLIDEALERFAGRDIVSSAEVLDLLLDMRSAAVSDAAIAALIDAEAQPAH*
Ga0062593_10089380723300004114SoilMDQAGIVTMIDEALERFASRDLLSGSEIVDFLLDMRSAIVSDAAIAALIESETETVG*
Ga0062593_10323362723300004114SoilMDRPGIVTMIDEAIERFAVRERVSAGEVVDFLLDLRSAVVSDEALRTLLEEEAQPTA*
Ga0063356_10059928813300004463Arabidopsis Thaliana RhizosphereMDQAGVVTIIDEALERFAARDLIAASEVVDFLLDLRSAVVSDAALAALIESEAQPAH*
Ga0062595_10082285613300004479SoilQEDQMDQAGIVTLIDEALERFAGRDIVSSAEVLDLLLDMRSAAVSDAAIAALIDAEAQPAH*
Ga0062595_10115953723300004479SoilVDQAGIVTIIDEALERFASRDLMGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH*
Ga0062595_10125368523300004479SoilMDQAGLVTLIDDALERFAGRDLISSGEIIDFLLDFRTAVVSDAAIAALIESETEPVR*
Ga0062595_10263367413300004479SoilMDQAGLVTLIDEALERFAGRDLISSGEIVDFLLDFRTAVVSDAALAALIESETEPAR*
Ga0062591_10012467313300004643SoilMDQAGIVTLIDEALERFAGRDIVSSAEVLDLLLDMRSAAVSDAAIAALIDAEAQPAH*
Ga0062594_10161395923300005093SoilMDQAGLVTLIDDALERFAARDLISSGEVIDFLLDFRTAVVSDAAIAALIESETEPVR*
Ga0066672_1062312813300005167SoilMDQAGVVNVIDEALERFSSRDLIAASGVVDFLLDLRSAVVSDAALAALIEAETQPTH*
Ga0066679_1061736423300005176SoilVDQAGIVTIIDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALVALIESETEPAH*
Ga0066675_1060595813300005187SoilMDQAGLVTLIDEALERFAGRDLVSSTEVVDLLLDMRSAAVSDAELAALIDSEAQPAH*
Ga0066388_10245764223300005332Tropical Forest SoilVDQAGIVTIIDEAIERFATRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH*
Ga0070682_10115524413300005337Corn RhizosphereGLVTLIDDALERFAARDLISSGEVIDFLLDFRTAVVSDAAIAALIESETEPVR*
Ga0070709_1044023623300005434Corn, Switchgrass And Miscanthus RhizosphereMEQAGLVSIIDEALERYAGRDLIAASEVVDFLLDLRSAVVSDAALAALIEQETLPAH*
Ga0070709_1052936123300005434Corn, Switchgrass And Miscanthus RhizosphereMDQAGVVNVIDEALERFSSRDLIAASEVIDFLLDLRSAVVSDAALAALIDAETQPTH*
Ga0070713_10028603023300005436Corn, Switchgrass And Miscanthus RhizosphereVDQAGIVTIIDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH*
Ga0070713_10079605923300005436Corn, Switchgrass And Miscanthus RhizosphereVDQAGVVTIIDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH*
Ga0070705_10153238423300005440Corn, Switchgrass And Miscanthus RhizosphereLIDEALERFAGRDIVSSAEVLDLLLDMRSAAVSDAAIAALIDAEAQPAH*
Ga0070663_10104643923300005455Corn RhizosphereMDQAGIVHMIDESLERFSGRDLIAASEIVDFLLDLRSAIVSDAAIAALIESEAQPTA*
Ga0070665_10125370923300005548Switchgrass RhizosphereVDQAGIVTIIDEALERFASRDLVGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH*
Ga0070704_10071790813300005549Corn, Switchgrass And Miscanthus RhizosphereNQEDQMDQAGIVTLIDEALERFAGRDIVSSAEVLDLLLDMRSAAVSDAAIAALIDAEAQPAH*
Ga0066694_1032351623300005574SoilMDQAGLVTIIDEALERFAGRDLVASSEVVDLLLDLRSAVVSDAAIAALIEAEAQPAR*
Ga0066903_10096219713300005764Tropical Forest SoilPQSRRTHVDQAGIVTIIDEAIERFATRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH*
Ga0066903_10152320423300005764Tropical Forest SoilMDQVGLVRMIDEALERFSSRDLVAASEIVDFLLDFRSAVVSDEAIAALIESETQPAH*
Ga0066903_10349223013300005764Tropical Forest SoilMDQAGLVTMIDEALERFAGRDLIASGEIVDFLLDFRTAVVSDAALAALIESESEPAH*
Ga0075287_101168523300005873Rice Paddy SoilMDRPGIVTMIDEAIERFAVRERVAAGEVVDFLLDLRSAVVSDEALRTLLEEESQPTG*
Ga0070717_1176270023300006028Corn, Switchgrass And Miscanthus RhizosphereKPGRLPPRSARRSDMEQAGLVSIIDEALERYAGRDLIAASEVVDFLLDLRSAVVSDAALAALIEQETLPAH*
Ga0075365_1111549013300006038Populus EndosphereMDQAGLVTLIDDALERFAGRDLISSGEIIDFLLDFRTAVVSDAAIAALIESESEPAR*
Ga0066652_10054090513300006046SoilMDQAGIVNVIDEALERFSSRDLIAASEIVDFLLDLRSAVVSDAALAALIEAEAQPTH*
Ga0075024_10007979923300006047WatershedsVDQAGIVTIIDEALERFAARDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH*
Ga0075024_10039250723300006047WatershedsMDQAGIVTLIDEALQRFAGRDLVSSMEVLDLLLDMRSAALSDAEIAALIDAEVQPAH*
Ga0075026_10016212023300006057WatershedsEALERFASRDLLGSSEVVDFLLDLRTAVVSDAALAALIESETEPAH*
Ga0075026_10041253223300006057WatershedsVDQAGIVTIIDEALERFASRDLLGSSEVVDFLLDLRTAVVSDAALAALIESETEPAH*
Ga0075026_10081661313300006057WatershedsMDQAGIVTLIDEALKRFAGRDLVSSNEVLDLLLDMRTAAVSDAAIAALIDSEAQPAH*
Ga0075030_10150004613300006162WatershedsASTLLKQDQEDEMDQAGIVTLIDEALTRFAGRDLVSSNEVLDLLLDMRTAAVSDAAIAALIESEAQPAH*
Ga0070715_1010570723300006163Corn, Switchgrass And Miscanthus RhizosphereQAGIVTIIDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALVALIESETEPAH*
Ga0075018_1036614823300006172WatershedsMDQAGIVTLIDEALQRFAGRDLVSSTEVLDLLLDMRSAALSDAAIRELIDSE
Ga0074049_1290934923300006580SoilMDQAGLVTLIDDALERFAARDLISSGEIIDFLLDFRTAVVSDAAIAALIESETEPVR*
Ga0075471_1000967563300006641AqueousMDKPGLVSIIDEALERFSARDLVAASEVVDFLLDLRSAAVSDAALAALIESEAQPTH*
Ga0079222_1178586513300006755Agricultural SoilMDQAGIVTLIDEALERFAARDIVSSSEVVDLLLDMRSAAVSDAELAALIDSEAQPAH*
Ga0066658_1063528423300006794SoilMDQAGIVTLIDEALERFAGRDLVSSSEVVDLLLDMRSAAVSDAELAALIDSEAQPAH*
Ga0066659_1137351713300006797SoilDVDQAGIVTIIDEALERFASRDLMGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH*
Ga0075425_10078919023300006854Populus RhizosphereMDQAGIVTLIDEALERFAARDIVSSSEVVDILLDLRSAAVSDAELAALIDSEAQPAH*
Ga0075425_10250104923300006854Populus RhizosphereQDQEDQMDQAGIVTLIDEALERFAGRDLVSSTEVVDLLLDMRSAAVSDAELAALIDSEAQPAH*
Ga0073934_1037373923300006865Hot Spring SedimentMDQAGLVTVIDEALERFAGRDLVSSGEIVDFLLDLRSAVVSDAALAALIEAESQPTA*
Ga0075472_1062176723300006917AqueousMDKPGLVSIIDEALERFSARDLVAASEVVDFAPHLRSAAVSDAALAALIESEAQPTH*
Ga0079218_1130514413300007004Agricultural SoilMDQAGIVTIIDEALERFAARDLIAASEVVDFLLDLRSAVVSDAALAALIESEAQPAH*
Ga0066710_10098448023300009012Grasslands SoilDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH
Ga0066710_10476502413300009012Grasslands SoilAGIVTLIDEALERFAGRDLVSSTEVVDLLLDMRSAAVSDAELAALIDSEAQPAH
Ga0111539_1045973633300009094Populus RhizosphereMNQAGIVTLIDEALERFAGRDLVSSTEVVDLLLDMRSAAVSDAELAALIDSEAQPAH*
Ga0105243_1167864023300009148Miscanthus RhizosphereMDEAGIVMLIDEALERFAGRDIVSSAEVLDLLLDMRSAAVSDAAIAALIDAEA
Ga0105241_1093901623300009174Corn RhizosphereMDQAGIVTLIDEALERFAGRDIVSSAEVLDLLLDMRSAAVSDAAIAALIDSEAQPAH*
Ga0134062_1073504823300010337Grasslands SoilMDQAGIVTLIDEALERFAGRDIVSSAEVLDLLLDMRSAAVSDAAIAALIDAEAQPA
Ga0126377_1017337623300010362Tropical Forest SoilMDQAGLVTLIDEALERFAGRDLISSSEVVDFLLDFRTAVVSDAALAALIESETEPAR*
Ga0134126_1190429513300010396Terrestrial SoilVDQAGIVTIIDEALERFASRDLIGSTEVVDFLLDLRSAVVSDAALAALIEAETEPAH*
Ga0126383_1211339713300010398Tropical Forest SoilVDQAGIVTIIDEAIERFSTRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH*
Ga0126354_104574423300010857Boreal Forest SoilIDEALERFAGRDIVSSAEVLDLLLDMRSAAVSDAAIAALIDAEAQPAH*
Ga0126348_116447523300010862Boreal Forest SoilHRRRAATLAVQSRRTHVDQAGIVTIIDEAIERFAPRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH*
Ga0126346_129868213300010865Boreal Forest SoilVDQAGIVTIIDEAVGRFASRDLIGSSEVVDFLLDLRTAVVSDAALAALIESETEPAH*
Ga0126350_1189783163300010880Boreal Forest SoilVDQAGIVTIIDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALAALIEAETEPAH*
Ga0137363_1096390213300012202Vadose Zone SoilVDQAGIVTIIDEALERFASRDLIGSSEVVDFLLDLRSAVVYDAALAALIESETEPAH*
Ga0150985_10535002923300012212Avena Fatua RhizosphereMDQAGLVTLIDDALERFAGRDLISSGEIIDFLLDFRTAVVSDAALAALIESESEPAV*
Ga0150985_10898612113300012212Avena Fatua RhizosphereMHQAGIVTMIDEALERFASRDLLSASEIVDFLLDLRSAVVSDAALAALIESETETVG*
Ga0150985_11900821223300012212Avena Fatua RhizosphereMDQAGIVTLIDEALERFAGRDLVSSTEVLDLLLDMRTAAVSDAELQSLIDSEAQPAH*
Ga0150985_12109974133300012212Avena Fatua RhizosphereMDQAGIVHMIDESLERFSGRDLIAASEIVDFLLDLRSAVVSDAAIAALIESEAQPTA*
Ga0150984_10837799413300012469Avena Fatua RhizosphereDQMDQAGIVTLIDEALERFAGRDIVSSAEVLDLLLDMRSAAVSDAAIAALIDAEAQPAH*
Ga0150984_11886534813300012469Avena Fatua RhizosphereTHVDQAGIVTIVDEAIERFATRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH*
Ga0150984_12035684013300012469Avena Fatua RhizosphereRRRPATVEKTERSGMDRPGIVTMIDEAIERFAVRERVAAGEVVDFLLDLRSALVSDEALRTLLEEEAQPAG*
Ga0150984_12252947123300012469Avena Fatua RhizosphereGYADVQTRRIDVDQAGIVTIIDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH*
Ga0157298_1037890423300012913SoilMDQAGIVTLIDEALERFAGRDLVSSTEVVDLLLDMRSAAVSDAELAALIDSE
Ga0137359_1057116223300012923Vadose Zone SoilTLIDEALERFAGRDLVSSTEVVDLLLDMRSAAVSDAELAALIDSEAQPAH*
Ga0153915_1014978533300012931Freshwater WetlandsVDQAGIVTIIDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALAALIESEIEPAH*
Ga0164241_1058936923300012943SoilMDQAGIVHMVDESLERFSGRDLIAASEIVDFLLDLRSAIVSDAAIAALIESEAQPTA*
Ga0164299_1151204713300012958SoilMDQAGFLNVIDEALERFSSRDLIAASEVVDFLLDLRTAAVSDAALAELIESETQPAH*
Ga0164301_1159030823300012960SoilMDQAGIVTLIDEALERFAGRDLVSSTEVTDLLLDMRTAAVSDAELAALIDSEAQPAH*
Ga0134087_1064374513300012977Grasslands SoilSRRTDVDQAGIVTIIDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALVALIESETEPAH*
Ga0164305_1191488813300012989SoilLSRRTDVDQAGIVTIIDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALAALIEAETEPAH*
Ga0157374_1240127323300013296Miscanthus RhizosphereVDQAGIVTIIDEALERFAGRDLISSGEIVDFLLDFRTAVVSDAALAALIDSETEPVR*
Ga0134079_1057790213300014166Grasslands SoilGGTDMDQAGLVTIIDEALERFAGRDLVASSEVVDLLLDLRSAVVSDAAIAALIEAEAQPAR*
Ga0075323_114793713300014301Natural And Restored WetlandsVDQAGIVTIIDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALAALIESEAEPAH*
Ga0075355_100307023300014322Natural And Restored WetlandsVDQAGIVTIIDEALERFASRDLLGSSEVVDFLLDLRTAVVSDAALAALIESEIEPAH*
Ga0182019_1067064033300014498FenVDQAGIVTIIDEALERFASRDLVGSSEVVDFLLDLRSAVVSDAALAALIESETEPTH*
Ga0157377_1092919813300014745Miscanthus RhizosphereMDQAGLVTLIDDALERFAGRDLISSGEIIDFLLDFRTAVVSDAAIAALIESETEPAV*
Ga0173483_1065262023300015077SoilMDQAGLVTLIDDALERFAVRDLVSAGEVVDFLLDLRTAVVSDAALAAL
Ga0167637_102366133300015087Glacier Forefield SoilVTFIDEALERFATRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH*
Ga0163144_1036564313300015360Freshwater Microbial MatMDQAGIVTAIDGALERFAARDLVSAGEIVDFLLDLRTLAVSDAAIAAL
Ga0182035_1190246413300016341SoilMDQAGIVTIIDEALERFAARDLIAASEVVDFLLDLRSAVVSDAALAALIESEAQPAH
Ga0182034_1137140413300016371SoilIDEALERFATRDLITGSEMVDFLLDLRSAVVSDAAIAALIESETQPTH
Ga0182040_1187520523300016387SoilMDQAGIVTMIDEALERFANRDLVAASEIVDFLLDMRSAVVSDAALAALI
Ga0187786_1020961613300017944Tropical PeatlandVDQAGIVTIIDEAIERFATRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH
Ga0187786_1035799223300017944Tropical PeatlandMDQAGIVTLIDEALKRFAGRDLVSSNEVIDLLLDMRTAAISDAAIAALIDSEAQPAH
Ga0187786_1058603813300017944Tropical PeatlandMDQAGIVHMIDESLERFSGRDLIAASEIVDFLLDLRGAVVSDAAIEALIESEAQPTA
Ga0187785_1073978613300017947Tropical PeatlandRAYGRLRCSKDAGRTHVDQAGIVTIIDEALERFAARDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH
Ga0187779_1024510823300017959Tropical PeatlandMDQAGIVTLIDEALKRFAGRDLVSSSEVVDLLLDMRSAAISDAAIAALIESEAQPTH
Ga0187779_1036660723300017959Tropical PeatlandMDQAGIVTLIDEALERFAARDLVTASEVVDYLLDLRSAVVSDAALAALIESEAQPAH
Ga0187779_1039013413300017959Tropical PeatlandMDQAGIVHIIDEALERYAGRDLIASSEIVDFLLDLRSAVVSDAALEALIESETQPTH
Ga0187779_1057065723300017959Tropical PeatlandMDQAGIVTIIDEALERFSARDLVAASEIVDFLLDLRSAVVSDAALAALIESEAQPTH
Ga0187780_1082270423300017973Tropical PeatlandMDQAGIVTLIDEALKRFAGRDLVSSNEVVDLLLDMRSAAISDAAIAALIESEAQPTH
Ga0187777_1005751043300017974Tropical PeatlandMDQAGIVTLIDEALERFAGRDLVSSTEVVDLLLDMRSAAVSDAELAALIDSEAQPAH
Ga0187777_1037081923300017974Tropical PeatlandPERATLLRQDQEDQMDQAGIVTLIDEALERFAGRDLVSSTEVVDLLLDMRSAAVSDAELAALIDSEAQPAH
Ga0187777_1049029713300017974Tropical PeatlandMDQAGIVTLIDEALERFAGRDLVSSSEVLDLLLDMRSAAMSDAALRDLIDSEAQPAH
Ga0187787_1035389813300018029Tropical PeatlandMDQAGIVTLIDEVLERFAGRDLVSSTEVVDLLLDMRSAAVSDAELAALIDSEAQPAH
Ga0187787_1049578223300018029Tropical PeatlandVDQAGIVTMIDEALERFSSRDLLSASEIVDFLLDLRSAVVSDAALAALIESETETVG
Ga0187765_1036339013300018060Tropical PeatlandVDQAGIVTIIDEAIERYATRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH
Ga0187765_1106967823300018060Tropical PeatlandMDQAGIVTLIDEALERFAGRDLVSSTEVVDLLLDMRSAAVSDAELAALI
Ga0187773_1097923413300018064Tropical PeatlandPGQNQEDEMDQAGIVTLIDEALERFAGRDLVSSTEVLDLLLDMRSAAVSDAELAALIDSEAQPAH
Ga0066662_1138630013300018468Grasslands SoilMDQAGVVNVIDEALERFSSRDLIAASEVVDFLLDLRSAVVSDAALAALIEAETQPTH
Ga0190270_1099377913300018469SoilMDQAGLVTLIDDALERFAGRDLISSGEIIDFLLDFRTAVVSDAAIAALIESETEPAV
Ga0066669_1006761433300018482Grasslands SoilVDQAGIVTIIDEALERFASRDLMGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH
Ga0184642_111714813300019279Groundwater SedimentMDQAGVVNIIDEALERFSSRDLIAASKVVDFLLDLRSAVVSDAALAALIEAETQPTH
Ga0163151_1006153533300020057Freshwater Microbial MatMDQAGIVTAIDGALERFAARDLVSAGEIVDFLLDLRTLAVSDAAIAALLEEESQPTG
Ga0206350_1130525623300020080Corn, Switchgrass And Miscanthus RhizosphereYADRSRAGGPDVDQAGIVTIIDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH
Ga0213851_164118813300021860WatershedsVDQAGIVTIIDEALERFAARDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH
Ga0242656_110550613300022525SoilMASTLLKQDQEDEMDQAGIVTLIDEALKRFAGRDLVSSNEVLDLLLDMRTAAVSDAAIAALIESEAQPAH
Ga0209172_1042069323300025310Hot Spring SedimentMDQAGLVTVIDEALERFAGRDLVSSGEIVDFLLDLRSAVVSDAALAALIEAESQPTA
Ga0207688_1094168923300025901Corn, Switchgrass And Miscanthus RhizosphereMDQAGIVTLIDEALERFAGRDLVSSTEVVDLLLDMRSAAVSDAELAAL
Ga0207657_1119574013300025919Corn RhizosphereVDQAGIVTIIDEALERFASRDLVGSSEVADFLLDLRSAVVSDAALAALIESETEPAH
Ga0207687_1082781723300025927Miscanthus RhizosphereVDQAGIVTIIDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALAALIES
Ga0207700_1033889033300025928Corn, Switchgrass And Miscanthus RhizosphereVDQAGVVTIIDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH
Ga0207700_1054013123300025928Corn, Switchgrass And Miscanthus RhizosphereDEDVAQTTRCGGYACLQSRRTHVDQAGIVTIIDEAIERFATRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH
Ga0207669_1123484123300025937Miscanthus RhizosphereMDQAGIVTLIEEALERFAGRDLVSSTEVVDLLLDMRSAAVSDAELAALIDSEAQPAH
Ga0207665_1139574023300025939Corn, Switchgrass And Miscanthus RhizosphereVDQAGIVTIIDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEP
Ga0207703_1041916823300026035Switchgrass RhizosphereMDQAGLVTLIDDALERFAGRDLISSGEIIDFLLDFRTAVVSDAAIAALIESETEPVR
Ga0207703_1121556923300026035Switchgrass RhizosphereMDQAGIVTMIDEALERFASRDLLSGSEIVDFLLDMRSAIVSDAAIAALIESETETVG
Ga0207648_1149278913300026089Miscanthus RhizosphereMDQAGIVMLIDEALERFAGRDIVSSAEVLDLLLDMRSAAVSDAAIAALIDAEAQPAH
Ga0207675_10173905313300026118Switchgrass RhizosphereMDQAGLVTLIDDALERFAARDLISSGEVIDFLLDFRTAVVSDAAIAALIESETEPVR
Ga0209027_102889113300026300Grasslands SoilMDQAGLVNVIDEALERFSSRDLIAASEVVDFLLDLRSAVVSDAALAALIDAETLPAH
Ga0209153_112996433300026312SoilMDQAGVVNVIDEALERFSSRDLIAASEVVDFLLDLRSAVVSDAALAALIEAETQ
Ga0255188_101279333300027079FreshwaterMDKPGLVSIIDEALERFSARDLVAASEVVDFLLDLRSAAVSDAALAALIESEAQPTH
Ga0209068_1053006823300027894WatershedsMDQAGIVTLIDEALQRFAGRDLVSSMEVLDLLLDMRSAALSDAEIAALIDAEVQPAH
Ga0209488_1026204223300027903Vadose Zone SoilVDQAGIVTIIDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH
Ga0209006_1096768513300027908Forest SoilMDQAGIVTLIDEALERFAGRDLVSSTEVLDLLLDMRTVAMSDAALHELIDSETQPAH
Ga0209382_1030911713300027909Populus RhizosphereMDRPGIVTMIDEAIERFAVRERVSAGEVVDFLLDLRSAVVSDEALRTLLEEEAQPTA
(restricted) Ga0255057_1037064723300027997SeawaterMDRTGIVGLIDEAIERFATREMVTGSEIVDFLLDLRSAAVSDAEIEALLESEAQPTA
Ga0255200_105741813300028066FreshwaterMDKPGLVSIIDEALERFAARDLVAASEVVDFLLDLRSAAVSDAALAALIESEAQPTH
Ga0268266_1073240213300028379Switchgrass RhizosphereVDQAGIVTIIDEALERFASRDLVGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH
Ga0265334_1004045233300028573RhizosphereMDQAGIVTLIDEALKRFAGRDLVSSNEVLDLLLDMRTAAISDAAIAALIDAEAQPAH
Ga0265318_1018205723300028577RhizosphereMDQAGIVTLIDEALTRFAGRDLVSSNEVLDLLLDMRTAAVSDAAIAALIDSEAQPAH
Ga0265318_1037356713300028577RhizosphereVDQAGIVTIIDEAIERFAGRDLIGSSEVVDFLLDLRSAVVSDAALAALIEAETEPAH
Ga0247822_1128044623300028592SoilMDQAEVVTIIDEALERFAARDLIASSEVVDFLLDLRSAVVSDAALAALIESETQ
Ga0265338_1025251033300028800RhizosphereMDQAGIVTLIDEALERFAGREIVSSAEVLDLLLDMRTAAVSDAAIAALIDAEAQPAH
Ga0311332_1112218523300029984FenMDQAGIVTLIDEALERFAGRDLVSSTEVLDLLLDMRSAALSDAEIEALIDSEAQPAH
Ga0311332_1137582123300029984FenVDQAGIVTIIDEALERFASRDLLGSSEVVDFLLDLRTAVVSDAALAALIESEIEPAH
Ga0311336_1191345013300029990FenVDQAGIVTIIDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALAA
Ga0311335_1124140123300030838FenEASTLGVQNQEDEMDQAGIVTLIDEALERFAGRDLVSSTEVLDLLLDMRSAALSDAEIEALIDSEAQPAH
Ga0308204_1036287213300031092SoilTLTVQSRRSDVDQAGIVTIIDEALERFASRDLMGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH
Ga0299914_1003817333300031228SoilMDQAGLVTLIDEALERFAGRDLISSGEIVDFLLDFRTAVVSDAALAALIEAETEPAR
Ga0302323_10296751313300031232FenMDQAGIVTLIDEALERFAGRDLVSSTEVLDLLLDMRTAAVSDAELQSLIASEAQPAH
Ga0265328_1025167223300031239RhizosphereMDQAGIVTLIDTALERFAGRDLVSSTEVLDLLLDMRSAALSDAELAALIDSEAQPAH
Ga0265320_1038663223300031240RhizosphereMDQAGIVTLIDEALKRFAGRDLVSSNEVLDLLLDMRTAAISDAAIAALIDSEAQPAH
Ga0265316_1052984213300031344RhizosphereDQAGIVTIIDEALERFASRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH
Ga0310887_1017186533300031547SoilMDQAGLVTMIDEALERFASRDLVSAAEIVDFLLDFRSAVVSDAAIAALLEAESQPAG
Ga0318560_1070103113300031682SoilRRLRLSQSRRTDVDQAGIVTIIDEAIERFATRDLIGSSEVVDVLLDLRSAVVSDAALAALIESETEPAH
Ga0265314_1053135213300031711RhizosphereHVDQAGIVTIIDEAIERFAGRDLIGSSEVVDFLLDLRSAVVSDAALAALIEAETEPAH
Ga0302321_10231731313300031726FenVDQAGIVTIIDEALERFASRDLLGSSEVVDFLLDLRTAVVSDAALAALIESETEPAH
Ga0307468_10219864623300031740Hardwood Forest SoilMDQAGLVTLIDEALERFAGRDLVSSTEVVDLLLDMRSAAVSDAELAALIDSEAQPAH
Ga0318494_1052312023300031751SoilMDQAGIVTIIDEALERFAACDLIAASEVVDFLLDLRSAVVSDAALAALIESEAQPAH
Ga0310892_1014501513300031858SoilMDQAGIVTLIDEALERFAGRDLVSSTEVVDLLLDMRSAAVSDAELAALID
Ga0318536_1069586813300031893SoilMDQAGIVTIIDEALERFAARDLIAASEVVDFLLDLRSAVVSDAALAALIESE
Ga0310891_1023557413300031913SoilMDQAGLVTMIDEALERFASRDLVSAAEIVDFLLDFRSAVVSDAAIAALLEAES
Ga0311367_1176981513300031918FenIDEALERFASRDLLGSSEVVDFLLDLRTAVVSDAALAALIESETEPAH
Ga0306926_1134638823300031954SoilMDQAGIVTMIDEALERFANRDLVAASEIVDFLLDMRSAVVSDAALAALIESEAETVG
Ga0326597_1221577923300031965SoilELRSEPIGLVASIDAALERFAARDIVAAAEVVDFLLDLRTLVVADDDLAALIDAERQPTA
Ga0307416_10386298023300032002RhizosphereMDQAGIVTIIDEALERFSARDLIASSEIVDFLLDLRSAVVSDAALAALIESEAQPAH
Ga0310906_1092171913300032013SoilIVTLIDEALERFAGRDIVSSAEVLDLLLDMRSAAVSDAAIAALIDAEAQPAH
Ga0315272_1074369113300032018SedimentVDQAGIVTIIDEAIERFASRDLVGASEVVDFLLDLRSAVVSDAALVALIESETEPAH
Ga0315540_1020769813300032061Salt Marsh SedimentMETMGLVARIDEALERFAGRDLVASAEIVDFLLDLRSASVADDEIEALLEAE
Ga0315271_1051673423300032256SedimentMDQAGFLNVIDEALERFSSRDLIAASEVVDFLLDLRSAAVSDAALAELIDSETQPAH
Ga0306920_10238135313300032261SoilCPERERSRGRCTDDAARRLRLSQSRRTDVDQAGIVTIIDEAIERFATRDLIGSSEVVDFLLDLRSAVVSDAALAALIESETEPAH
Ga0335085_10007483153300032770SoilVEQAGIVTIIDEAIERFASRDLIGSAEVVDFLLDLRSAVVSDAALAALIESETEPAH
Ga0335078_1148880023300032805SoilMDQAGIVTLIDEALERFAGRDLVSSNEVVDLLLDMRSAAMSDAAIRELIDSEVQPTH
Ga0318519_1100538023300033290SoilVDQAGIVTIIDEAIERFATRDLIGSSEVVDFLLDLRSAVVSDAALAALIE
Ga0214472_1061199223300033407SoilMTELRSEPIGLVASIDAALERFAARDIVAAAEVVDFLLDLRTLVVADDDLAALIDAERQPTA
Ga0326726_1139325033300033433Peat SoilMDQAGIVTLIDEALERFSARDLVAASEVVDYLLDLRSAVVSDAALAALIESETLPAH
Ga0247829_1031742723300033550SoilMDQAGLVTLIDDALERFAARDLISSGEIIDFLLDFRTAVVSDAAIAALIESESEPVR


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