Metagenome / Metatranscriptome Family F028604

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F028604
Family Type	Metagenome / Metatranscriptome
Number of Sequences	191
Average Sequence Length	40 residues
Representative Sequence	VGAGAIGDVSEDLGPVLELNPVDAVGKRLHHDPLHEWGA
Number of Associated Samples	148
Number of Associated Scaffolds	191

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	79.06 %
% of genes near scaffold ends (potentially truncated)	44.50 %
% of genes from short scaffolds (< 2000 bps)	76.96 %
Associated GOLD sequencing projects	136
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.17

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.958 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (28.796 % of family members)
Environment Ontology (ENVO)	Unclassified (30.366 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.068 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.37% β-sheet: 0.00% Coil/Unstructured: 74.63%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.17
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.17
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 191 Family Scaffolds
PF00416	Ribosomal_S13	40.31
PF00557	Peptidase_M24	25.65
PF00406	ADK	7.33
PF00411	Ribosomal_S11	6.81
PF00344	SecY	4.19
PF00444	Ribosomal_L36	2.09
PF00163	Ribosomal_S4	2.09
PF00572	Ribosomal_L13	1.57
PF01196	Ribosomal_L17	1.57
PF03118	RNA_pol_A_CTD	1.05
PF01193	RNA_pol_L	1.05
PF00177	Ribosomal_S7	0.52
PF01479	S4	0.52
PF03030	H_PPase	0.52
PF01416	PseudoU_synth_1	0.52
PF00589	Phage_integrase	0.52
PF00528	BPD_transp_1	0.52
PF00237	Ribosomal_L22	0.52

COG ID	Name	Functional Category	% Frequency in 191 Family Scaffolds
COG0099	Ribosomal protein S13	Translation, ribosomal structure and biogenesis [J]	40.31
COG0563	Adenylate kinase or related kinase	Nucleotide transport and metabolism [F]	7.33
COG0100	Ribosomal protein S11	Translation, ribosomal structure and biogenesis [J]	6.81
COG0201	Preprotein translocase subunit SecY	Intracellular trafficking, secretion, and vesicular transport [U]	4.19
COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	Transcription [K]	2.09
COG0257	Ribosomal protein L36	Translation, ribosomal structure and biogenesis [J]	2.09
COG0522	Ribosomal protein S4 or related protein	Translation, ribosomal structure and biogenesis [J]	2.09
COG0102	Ribosomal protein L13	Translation, ribosomal structure and biogenesis [J]	1.57
COG0203	Ribosomal protein L17	Translation, ribosomal structure and biogenesis [J]	1.57
COG1761	DNA-directed RNA polymerase, subunit L/RPAC2	Transcription [K]	1.05
COG0049	Ribosomal protein S7	Translation, ribosomal structure and biogenesis [J]	0.52
COG0091	Ribosomal protein L22	Translation, ribosomal structure and biogenesis [J]	0.52
COG0101	tRNA U38,U39,U40 pseudouridine synthase TruA	Translation, ribosomal structure and biogenesis [J]	0.52
COG3808	Na+ or H+-translocating membrane pyrophosphatase	Energy production and conversion [C]	0.52

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.96 %
Unclassified	root	N/A	12.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.96 %
Unclassified	root	N/A	12.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.96 %
Unclassified	root	N/A	12.04 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	39.79 %
Unclassified	root	N/A	12.04 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.52 %

Name	Rank	Taxonomy	Distribution
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	30.89 %
Unclassified	root	N/A	12.04 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	8.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.04 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	8.90 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	3.66 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	3.14 %
Negativicutes	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes	0.52 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.04 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	8.90 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	3.14 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1.57 %
Selenomonadales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales	0.52 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.04 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	8.90 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1.57 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	1.05 %
Alicyclobacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae	0.52 %
Selenomonadales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales	0.52 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.04 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	8.90 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1.57 %
Paenibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	1.05 %
Alicyclobacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae	0.52 %
Selenomonadales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales	0.52 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.52 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000732\|JGI12023J11887_1009125	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300000886\|AL3A1W_1065826	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300001086\|JGI12709J13192_1016383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	577	Open in IMG/M
3300001593\|JGI12635J15846_10407667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	819	Open in IMG/M
3300001661\|JGI12053J15887_10020421	All Organisms → cellular organisms → Bacteria	3705	Open in IMG/M
3300002853\|draft_1004263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1370	Open in IMG/M
3300004631\|Ga0058899_11824958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	851	Open in IMG/M
3300005171\|Ga0066677_10507633	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300005176\|Ga0066679_10658388	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300005454\|Ga0066687_10138353	All Organisms → cellular organisms → Bacteria	1275	Open in IMG/M
3300005467\|Ga0070706_101599625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	594	Open in IMG/M
3300005540\|Ga0066697_10509442	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300005542\|Ga0070732_10366586	Not Available	867	Open in IMG/M
3300005552\|Ga0066701_10980324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	500	Open in IMG/M
3300005553\|Ga0066695_10567838	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300005554\|Ga0066661_10008172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5082	Open in IMG/M
3300005557\|Ga0066704_10097456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1926	Open in IMG/M
3300005557\|Ga0066704_10396741	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300006028\|Ga0070717_10154608	All Organisms → cellular organisms → Bacteria	1986	Open in IMG/M
3300006032\|Ga0066696_10226106	All Organisms → cellular organisms → Bacteria	1203	Open in IMG/M
3300006059\|Ga0075017_100877213	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300006173\|Ga0070716_100194560	All Organisms → cellular organisms → Bacteria	1343	Open in IMG/M
3300006794\|Ga0066658_10694530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	561	Open in IMG/M
3300006797\|Ga0066659_10065129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2361	Open in IMG/M
3300006800\|Ga0066660_10685188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	845	Open in IMG/M
3300007076\|Ga0075435_100140037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2029	Open in IMG/M
3300007255\|Ga0099791_10013673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3430	Open in IMG/M
3300007258\|Ga0099793_10055792	All Organisms → cellular organisms → Bacteria	1756	Open in IMG/M
3300007258\|Ga0099793_10186715	Not Available	991	Open in IMG/M
3300007258\|Ga0099793_10256080	Not Available	846	Open in IMG/M
3300007265\|Ga0099794_10138984	All Organisms → cellular organisms → Bacteria	1230	Open in IMG/M
3300009029\|Ga0066793_10079403	All Organisms → cellular organisms → Bacteria	1885	Open in IMG/M
3300009038\|Ga0099829_10600100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	915	Open in IMG/M
3300009038\|Ga0099829_10873832	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300009038\|Ga0099829_10932163	Not Available	720	Open in IMG/M
3300009038\|Ga0099829_10959987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	709	Open in IMG/M
3300009088\|Ga0099830_10682230	Not Available	845	Open in IMG/M
3300009088\|Ga0099830_11659524	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300009088\|Ga0099830_11686401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	529	Open in IMG/M
3300009089\|Ga0099828_10194035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1810	Open in IMG/M
3300009089\|Ga0099828_10295444	All Organisms → cellular organisms → Bacteria	1457	Open in IMG/M
3300009090\|Ga0099827_10023020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4364	Open in IMG/M
3300009090\|Ga0099827_10415392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1151	Open in IMG/M
3300009090\|Ga0099827_11055560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	705	Open in IMG/M
3300009090\|Ga0099827_11812947	Not Available	532	Open in IMG/M
3300009137\|Ga0066709_101312658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1060	Open in IMG/M
3300009651\|Ga0105859_1119330	Not Available	724	Open in IMG/M
3300010048\|Ga0126373_11449147	Not Available	752	Open in IMG/M
3300010075\|Ga0127434_119494	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300010088\|Ga0127476_1029799	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300010090\|Ga0127471_1022164	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300010096\|Ga0127473_1005690	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300010105\|Ga0127470_1094521	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300010111\|Ga0127491_1107359	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300010114\|Ga0127460_1118175	Not Available	850	Open in IMG/M
3300010125\|Ga0127443_1082541	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300010128\|Ga0127486_1148658	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300010141\|Ga0127499_1197000	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300010320\|Ga0134109_10030635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1707	Open in IMG/M
3300010358\|Ga0126370_10145622	All Organisms → cellular organisms → Bacteria	1719	Open in IMG/M
3300010398\|Ga0126383_11081279	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300010860\|Ga0126351_1275488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	520	Open in IMG/M
3300011120\|Ga0150983_15548239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	877	Open in IMG/M
3300011270\|Ga0137391_10043642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3805	Open in IMG/M
3300011270\|Ga0137391_10491949	Not Available	1039	Open in IMG/M
3300011270\|Ga0137391_10570582	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300011271\|Ga0137393_10729274	Not Available	848	Open in IMG/M
3300011271\|Ga0137393_10776711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	819	Open in IMG/M
3300011271\|Ga0137393_10834973	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300011271\|Ga0137393_10912872	Not Available	749	Open in IMG/M
3300011987\|Ga0120164_1041480	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300011991\|Ga0120153_1000169	All Organisms → cellular organisms → Bacteria	37868	Open in IMG/M
3300011991\|Ga0120153_1001219	All Organisms → cellular organisms → Bacteria	12353	Open in IMG/M
3300011997\|Ga0120162_1089393	Not Available	660	Open in IMG/M
3300012005\|Ga0120161_1052621	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300012011\|Ga0120152_1022411	All Organisms → cellular organisms → Bacteria	2354	Open in IMG/M
3300012019\|Ga0120139_1002250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	5304	Open in IMG/M
3300012096\|Ga0137389_10418581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1145	Open in IMG/M
3300012198\|Ga0137364_10114725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1913	Open in IMG/M
3300012200\|Ga0137382_10055347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2492	Open in IMG/M
3300012203\|Ga0137399_10455602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	1070	Open in IMG/M
3300012203\|Ga0137399_10667554	Not Available	875	Open in IMG/M
3300012203\|Ga0137399_10775342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	807	Open in IMG/M
3300012203\|Ga0137399_10837222	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300012206\|Ga0137380_10136185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2241	Open in IMG/M
3300012211\|Ga0137377_10087872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2933	Open in IMG/M
3300012211\|Ga0137377_10260383	All Organisms → cellular organisms → Bacteria	1665	Open in IMG/M
3300012357\|Ga0137384_11070102	Not Available	647	Open in IMG/M
3300012359\|Ga0137385_10001927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	17577	Open in IMG/M
3300012359\|Ga0137385_11589586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	518	Open in IMG/M
3300012361\|Ga0137360_10465854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1072	Open in IMG/M
3300012363\|Ga0137390_10162077	All Organisms → cellular organisms → Bacteria	2224	Open in IMG/M
3300012363\|Ga0137390_11245956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	690	Open in IMG/M
3300012372\|Ga0134037_1057613	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300012374\|Ga0134039_1097063	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300012374\|Ga0134039_1245306	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300012375\|Ga0134034_1029005	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300012377\|Ga0134029_1074116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	542	Open in IMG/M
3300012381\|Ga0134026_1128076	Not Available	609	Open in IMG/M
3300012382\|Ga0134038_1164928	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300012382\|Ga0134038_1273758	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300012383\|Ga0134033_1109566	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300012383\|Ga0134033_1138031	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300012383\|Ga0134033_1270926	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300012389\|Ga0134040_1082245	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300012389\|Ga0134040_1177815	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300012389\|Ga0134040_1254578	Not Available	593	Open in IMG/M
3300012389\|Ga0134040_1285391	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300012405\|Ga0134041_1247603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	506	Open in IMG/M
3300012405\|Ga0134041_1295923	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300012409\|Ga0134045_1283584	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300012685\|Ga0137397_11002653	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300012917\|Ga0137395_10196281	All Organisms → cellular organisms → Bacteria	1403	Open in IMG/M
3300012918\|Ga0137396_10221685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1393	Open in IMG/M
3300012923\|Ga0137359_10140480	All Organisms → cellular organisms → Bacteria	2150	Open in IMG/M
3300012925\|Ga0137419_10479053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	985	Open in IMG/M
3300012929\|Ga0137404_11103130	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300012957\|Ga0164303_10211095	Not Available	1083	Open in IMG/M
3300012960\|Ga0164301_10902863	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300013427\|Ga0120106_1083056	Not Available	565	Open in IMG/M
3300013763\|Ga0120179_1143502	Not Available	520	Open in IMG/M
3300014154\|Ga0134075_10242779	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300015164\|Ga0167652_1013752	All Organisms → cellular organisms → Bacteria	1716	Open in IMG/M
3300018071\|Ga0184618_10011652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2676	Open in IMG/M
3300018431\|Ga0066655_10074395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1831	Open in IMG/M
3300018433\|Ga0066667_10011025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4354	Open in IMG/M
3300018468\|Ga0066662_11065230	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300018482\|Ga0066669_10115123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1902	Open in IMG/M
3300019866\|Ga0193756_1000825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2782	Open in IMG/M
3300019882\|Ga0193713_1123272	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300019883\|Ga0193725_1035509	All Organisms → cellular organisms → Bacteria	1316	Open in IMG/M
3300020001\|Ga0193731_1019951	All Organisms → cellular organisms → Bacteria	1749	Open in IMG/M
3300021046\|Ga0215015_10179899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1515	Open in IMG/M
3300021088\|Ga0210404_10517531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	675	Open in IMG/M
3300021088\|Ga0210404_10862426	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300021307\|Ga0179585_1153766	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300021432\|Ga0210384_10210647	All Organisms → cellular organisms → Bacteria	1748	Open in IMG/M
3300021432\|Ga0210384_10557503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1030	Open in IMG/M
3300021479\|Ga0210410_10111652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2419	Open in IMG/M
3300021861\|Ga0213853_10495901	All Organisms → cellular organisms → Bacteria	1603	Open in IMG/M
3300022506\|Ga0242648_1071316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	565	Open in IMG/M
3300022557\|Ga0212123_10000044	All Organisms → cellular organisms → Bacteria	392379	Open in IMG/M
3300022691\|Ga0248483_111963	All Organisms → cellular organisms → Bacteria	2130	Open in IMG/M
3300025505\|Ga0207929_1003867	All Organisms → cellular organisms → Bacteria	3109	Open in IMG/M
3300025505\|Ga0207929_1008586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1958	Open in IMG/M
3300025862\|Ga0209483_1194224	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300025910\|Ga0207684_10000002	All Organisms → cellular organisms → Bacteria	1042751	Open in IMG/M
3300025922\|Ga0207646_10077525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2970	Open in IMG/M
3300025922\|Ga0207646_10094324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2680	Open in IMG/M
3300025922\|Ga0207646_10230535	All Organisms → cellular organisms → Bacteria	1673	Open in IMG/M
3300025929\|Ga0207664_11046666	Not Available	731	Open in IMG/M
3300026295\|Ga0209234_1011123	All Organisms → cellular organisms → Bacteria	3416	Open in IMG/M
3300026309\|Ga0209055_1029997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2497	Open in IMG/M
3300026310\|Ga0209239_1145573	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300026318\|Ga0209471_1000389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	30668	Open in IMG/M
3300026318\|Ga0209471_1118755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	1127	Open in IMG/M
3300026320\|Ga0209131_1006149	All Organisms → cellular organisms → Bacteria	7705	Open in IMG/M
3300026322\|Ga0209687_1086460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1020	Open in IMG/M
3300026328\|Ga0209802_1008194	All Organisms → cellular organisms → Bacteria	6366	Open in IMG/M
3300026343\|Ga0209159_1001779	All Organisms → cellular organisms → Bacteria	15889	Open in IMG/M
3300026351\|Ga0257170_1011996	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300026376\|Ga0257167_1063187	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300026469\|Ga0257169_1036791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	745	Open in IMG/M
3300026528\|Ga0209378_1028834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	2950	Open in IMG/M
3300026551\|Ga0209648_10026947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	5024	Open in IMG/M
3300027383\|Ga0209213_1028337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1056	Open in IMG/M
3300027546\|Ga0208984_1013894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1574	Open in IMG/M
3300027587\|Ga0209220_1012840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2231	Open in IMG/M
3300027655\|Ga0209388_1024075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1720	Open in IMG/M
3300027674\|Ga0209118_1002225	All Organisms → cellular organisms → Bacteria	8461	Open in IMG/M
3300027678\|Ga0209011_1077256	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300027681\|Ga0208991_1026780	All Organisms → cellular organisms → Bacteria	1744	Open in IMG/M
3300027681\|Ga0208991_1091198	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300027681\|Ga0208991_1152299	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300027846\|Ga0209180_10010531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4768	Open in IMG/M
3300027846\|Ga0209180_10224542	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300027846\|Ga0209180_10264022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	989	Open in IMG/M
3300027857\|Ga0209166_10016987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	4590	Open in IMG/M
3300027875\|Ga0209283_10010770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	5413	Open in IMG/M
3300027882\|Ga0209590_10009344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	4507	Open in IMG/M
3300027915\|Ga0209069_11007985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	511	Open in IMG/M
3300028536\|Ga0137415_10253201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1569	Open in IMG/M
3300028792\|Ga0307504_10078421	Not Available	1009	Open in IMG/M
3300029636\|Ga0222749_10107939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales	1315	Open in IMG/M
3300030903\|Ga0308206_1169662	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300031640\|Ga0318555_10765418	Not Available	521	Open in IMG/M
3300031670\|Ga0307374_10000450	All Organisms → cellular organisms → Bacteria	79503	Open in IMG/M
3300031753\|Ga0307477_10053361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2780	Open in IMG/M
3300032180\|Ga0307471_100185424	All Organisms → cellular organisms → Bacteria	2059	Open in IMG/M
3300032180\|Ga0307471_100414862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae	1477	Open in IMG/M
3300032205\|Ga0307472_100100200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1990	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.48%
Host-Associated	Host-Associated	0.52%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.86%
Aquatic	Environmental → Aquatic	2.62%
Plants	Host-Associated → Plants	0.52%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.86%
Sediment	Environmental → Aquatic → Sediment	1.57%
Freshwater	Environmental → Aquatic → Freshwater	0.52%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.52%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.25%
Loam	Environmental → Terrestrial → Soil → Loam	12.04%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.57%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.05%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.52%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.52%
Clay	Environmental → Terrestrial → Soil → Clay	0.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.52%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	53.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.66%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.38%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.33%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	6.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.19%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.57%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.05%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.52%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.52%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.52%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.52%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	28.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	15.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.28%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	5.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.66%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.09%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.57%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.57%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.05%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.05%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.52%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.52%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.52%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.52%
Hydrocarbon Resource Environments	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Hydrocarbon Resource Environments	0.52%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.52%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.52%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.52%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.52%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.52%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.52%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000732	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2	Environmental	Open in IMG/M
3300000886	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-65cm-3A)- 1 week illumina	Environmental	Open in IMG/M
3300001086	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002853	PDIso9.ppmwps2	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009651	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010075	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010088	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010090	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010096	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010105	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010111	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010114	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010125	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010128	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010141	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010860	Boreal forest soil eukaryotic communities from Alaska, USA - C5-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011987	Permafrost microbial communities from Nunavut, Canada - A20_80cm_0M	Environmental	Open in IMG/M
3300011991	Permafrost microbial communities from Nunavut, Canada - A34_65cm_12M	Environmental	Open in IMG/M
3300011997	Permafrost microbial communities from Nunavut, Canada - A15_80cm_18M	Environmental	Open in IMG/M
3300012005	Permafrost microbial communities from Nunavut, Canada - A15_80cm_0M	Environmental	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012372	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012374	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012375	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012377	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012381	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012382	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012383	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012389	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012405	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012409	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013427	Permafrost microbial communities from Nunavut, Canada - A15_35cm_18M	Environmental	Open in IMG/M
3300013763	Permafrost microbial communities from Nunavut, Canada - A15_65cm_0M	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015164	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4b, rock/ice/stream interface)	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019866	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021307	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022506	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022691	Soil microbial communities from Calhoun CZO, South Carolina, United States - 60cm depth	Environmental	Open in IMG/M
3300025505	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025862	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026351	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-B	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026469	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027383	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027546	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12023J11887_10091253	3300000732	Forest Soil	MGACTIGDVSQDFRPVLELNPVYAVGERLHHDPLHE*
AL3A1W_10658262	3300000886	Permafrost	VGACTIGDVSQDFRPVLELNPVDTVGKRLHHDPLHEWEALGHERRLYQTPGDGG*
JGI12709J13192_10163831	3300001086	Forest Soil	VGACTIGDVSQDLGPVLELNPVNAVGKRLYHDPLHERGALGHER*
JGI12635J15846_104076672	3300001593	Forest Soil	MGACTIGDVSQDFRPVLELNPVYAVGERLHHDPLHD*
JGI12053J15887_100204214	3300001661	Forest Soil	MGACTIGDVSQDLSPVLELHPVHAVGKRLHDDPLHERGALGHER*
draft_10042632	3300002853	Hydrocarbon Resource Environments	MGACTIGDVSQDFRPVLELNPVDTVGKRLHHDPLHEWGALGHEP*
Ga0058899_118249582	3300004631	Forest Soil	MGAGAVGDVSEDLGPVLELDPVHAVGKRLHHDPLHERGALGHERRVYQSLC*
Ga0066677_105076331	3300005171	Soil	VGAETVGDVGEDQRPVLELNPIHTVGKRLFDDPLHEWGAWGHE
Ga0066679_106583881	3300005176	Soil	VGAEAVGDVSEDLGPVLELDPIDTIGKRLHHDPLHEWGALGHE
Ga0066687_101383531	3300005454	Soil	PGEVGAETVGDVGEDQRPVLELNPIHTVGKRLFDDPLHEWGAWGHERRVYQRPD*
Ga0070706_1015996252	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	GTIGDVSEDLRPVLELNPVDTVGKRLHHDPLHEWGALGHEA*
Ga0066697_105094422	3300005540	Soil	VGAGPIGDVGEDLRPILELNPVHAVGKRLHHDPLH
Ga0070732_103665861	3300005542	Surface Soil	MGAGAIGDVGEDLRPVLELNPVETVGQRLHHDPLHE*
Ga0066701_109803242	3300005552	Soil	VGAGTIGDVSEDLGPVLELNPVDTVGKRLHHDPLHEWGALGHEW*
Ga0066695_105678381	3300005553	Soil	VGAGAIGDVGEDFRPVLELNPVHAVGKRLHHDPLHE
Ga0066661_100081724	3300005554	Soil	MGAGAIGDVGEDLRPVLELNPVDAVGKRLHHDPLHE*
Ga0066704_100974561	3300005557	Soil	TIGDVSEDLGPVLELNPVDTVGKRLHHDPLHEWGALGHER*
Ga0066704_103967411	3300005557	Soil	VGAGAIGHVSEDLRPVLELNPVDAVGKRLHHDPLHEWGALGHE
Ga0070717_101546081	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VGAGTIGDVSEDLGPVLELNPVDTVGKRLHHDPLHE
Ga0066696_102261062	3300006032	Soil	VGAGAIGNVGQDLGPILELNPVYTVGKRLQDDPLYE*
Ga0075017_1008772132	3300006059	Watersheds	MGACAIGDVSEDLGPVFELNPVDAVGKRLHHDPLHEWGALGHER*
Ga0070716_1001945603	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VGACTIGDVSQDLGPVLELNPVNAVGKRFDHDPLHERGALGHER*
Ga0066658_106945302	3300006794	Soil	MGARAIGNVSEDLGPVLELNPVDAVGKRLHHDPLHE*
Ga0066659_100651295	3300006797	Soil	MGACAIGDVSEDLRPVLELNPIDTVGKGLYDDPLHEWGALGHE
Ga0066660_106851883	3300006800	Soil	MGAGAIGDVGEDLRPVLELNPVDTVGKRLHHDPLHE
Ga0075435_1001400373	3300007076	Populus Rhizosphere	MGACAIGDVSEDLRPVLELNPVDAVGKRLHHDPLHE*
Ga0099791_100136733	3300007255	Vadose Zone Soil	VGAGAIGNVSEDLGPVLELNPVDAVGKRLHHDPLHE*
Ga0099793_100557924	3300007258	Vadose Zone Soil	GEEPGEVGAGTIGHMSEDLRPVLELNPVDAVGKRLHHDPLHEWGALGHEL*
Ga0099793_101867152	3300007258	Vadose Zone Soil	GQQPGKVGACAIGDVSQDLGPVLELNPVDAVGQRFDHDPLHERGTLGHER*
Ga0099793_102560802	3300007258	Vadose Zone Soil	REVGAGTIGDVSEDFGPVLELNPVDTIGKRLHHDPLHEWGALGHER*
Ga0099794_101389842	3300007265	Vadose Zone Soil	VGAGTIGYVGQDLGPVLELNPVYTVGKRLQDDPLDE*
Ga0066793_100794033	3300009029	Prmafrost Soil	VGACTIGDVSQDLGPVLELNPVDAVGKRLDHDPLHERGALGHER*
Ga0099829_106001002	3300009038	Vadose Zone Soil	VGAGTIGHVSEDLGPVLELNPVDAVGKRLHHDPLHEWGALGHEP*
Ga0099829_108738322	3300009038	Vadose Zone Soil	VGAGAIGHVSEDLGPVLELNPIDAVGKRLHHGPLHEWGALGHEP*
Ga0099829_109321632	3300009038	Vadose Zone Soil	DVSEDLRPVLELNPVDTVGKRLHHDPLHEWGALGHER*
Ga0099829_109599872	3300009038	Vadose Zone Soil	VGAGTIGDMSEDLRPVLELNPVDTVGKRLHHDPLHEWEALGHEP*
Ga0099830_106822302	3300009088	Vadose Zone Soil	AGAIGHVSEDLGPVLELNPVDAVGKRLHHDPLHEWEALGHEP*
Ga0099830_116595241	3300009088	Vadose Zone Soil	VGAGTIGDVSEDLRPVLELNPVDTVGKRLHHDPLHEW
Ga0099830_116864012	3300009088	Vadose Zone Soil	EVGAGAIGHVSEDLGPVLELNPVDAVGKRLHHDPLHEWGALGHEP*
Ga0099828_101940353	3300009089	Vadose Zone Soil	VGAGAIGHVSEDLGPVLELNPVDAVGKRLHHDPLHE*
Ga0099828_102954441	3300009089	Vadose Zone Soil	PGEVGAGAIGHVSEDLGPVLELNPVDAVGKRLHHDPLHEWEALGHEP*
Ga0099827_100230204	3300009090	Vadose Zone Soil	MSEDLGPVLELNPVDAVGKRLHHDPLHEWGALGHEP*
Ga0099827_104153922	3300009090	Vadose Zone Soil	VGAGAIGNVSEDLGPVLELDPVDAVGKRLHHDPLHE*
Ga0099827_110555601	3300009090	Vadose Zone Soil	PCEVGAGTIGDVSEDLRPVLELNPVDTVGKRLHHDPLHEWGALGHET*
Ga0099827_118129472	3300009090	Vadose Zone Soil	VGAGAIGYVGQDLGPVLELNPVYTVGKRLQDDPLDE*
Ga0066709_1013126582	3300009137	Grasslands Soil	VGAGAIGNVGQDLGPILELNPVYAVGKRLQDDPLYE*
Ga0105859_11193301	3300009651	Permafrost Soil	VGACAIGDVSQDLSPVLELNPVNAVGKRFDHDPLHERGALGH*
Ga0126373_114491472	3300010048	Tropical Forest Soil	VGAGAIGDVSEDFGPVLELNPIDTVGKRLHHDPLHE*
Ga0127434_1194941	3300010075	Grasslands Soil	MGARAIGDVSEDLRPVLELNPVDTVGKRLYHDPLHE*
Ga0127476_10297991	3300010088	Grasslands Soil	MGAETIGDVSEDLRPVFELDPVHTVGQRLDHDPLHEWG
Ga0127471_10221642	3300010090	Grasslands Soil	VGAGAIGNVGQDLGPILELNPVHTVGKRLQDDPLYE*
Ga0127473_10056901	3300010096	Grasslands Soil	VGGQAIGDVSEDQRPVFELNPIHTVGKGLYDDPLHEWG
Ga0127470_10945211	3300010105	Grasslands Soil	MGAETIGDVSEDLRPVLQLDPVHTVGQRLDHDPLHEWGAL
Ga0127491_11073591	3300010111	Grasslands Soil	VGAGAIGNVGQDLGPVLELNPVYTVGKRLQDDPLDE*
Ga0127460_11181751	3300010114	Grasslands Soil	VGAGAVGDVGEDFRPVLELNPVDAIGKRLHHDPLHE*
Ga0127443_10825411	3300010125	Grasslands Soil	VGGQAIGDVSEDQRPVFELNPIHTVGKGLYDDPLHEWGALGHERRLYQSRG
Ga0127486_11486582	3300010128	Grasslands Soil	VGASAIGDVSEDLRPVLELNPVNTVRKRLHHDPLHE*
Ga0127499_11970001	3300010141	Grasslands Soil	VGACTIGDVSQDLRPVLELNPVHTVGKRLHDDPLHERGT
Ga0134109_100306352	3300010320	Grasslands Soil	VGAGAIGDVSEDLRPVLELNPVDAVGKRLHHDPLHE*
Ga0126370_101456221	3300010358	Tropical Forest Soil	KPREVGAGAIGNVGEDLGPVLELNPVDTVGKRLHHDPLHE*
Ga0126383_110812792	3300010398	Tropical Forest Soil	VGAGAIGNVGEDLGPVLQLNPVYAVRQRLEHDPLDE*
Ga0126351_12754881	3300010860	Boreal Forest Soil	VGAGAIGHVSEDLGPVLELNPVDAVGKRLHHDPLHD*
Ga0150983_155482392	3300011120	Forest Soil	MGAGTIGNVSEDFRPVFELNPVDAVGKRLHHDPLHERGTLGHER*
Ga0137391_100436422	3300011270	Vadose Zone Soil	VGAGAIGHVSEDLGPVFELNPVDAVGKRLHHDPLHE*
Ga0137391_104919491	3300011270	Vadose Zone Soil	IGHVSEDLGPVLELNPVDAVGKRLHHDPLHEWGALGHEP*
Ga0137391_105705822	3300011270	Vadose Zone Soil	VGAGTIGDMSEDLRPVLELNPVDTVGKRLHHDPLHEWEALGHER*
Ga0137393_107292742	3300011271	Vadose Zone Soil	MGAYAIGDVSEDHCPVLELNPVDTVGKRLHHDPLHE*
Ga0137393_107767113	3300011271	Vadose Zone Soil	MSEDLRPVLELNPVDTVGKRLHHDPLHEWEALGHEP*
Ga0137393_108349731	3300011271	Vadose Zone Soil	VGAGTIGDVSEDFGPVLELNPVDTIGKRLHHDPLHEWGALGHER*
Ga0137393_109128721	3300011271	Vadose Zone Soil	VGAGTIGDVSEDLRPVLELNPVDTVGKRLHHDPLHEWGALGHER*
Ga0120164_10414802	3300011987	Permafrost	VGACTIGDVSQDLSPVLELNPINAVGKRLDHDPLHERGALGHER*
Ga0120153_100016927	3300011991	Permafrost	VGACTIGDVSQDLGPVLELNPIYAVGKRLHHDPLHERGALGHER*
Ga0120153_100121911	3300011991	Permafrost	VGACTIGDVSQDLGPVLELNPVNAVGKRLDHDPLHERGALGHER*
Ga0120162_10893932	3300011997	Permafrost	QDLSPVLKLNPVNAIGKRLDHDPLHERGALGHER*
Ga0120161_10526211	3300012005	Permafrost	VGACTIGDVSQDLSPVLKLNPVNAIGKRLDHDPLHERGALGHER*
Ga0120152_10224114	3300012011	Permafrost	EKPGEVGTCTIGDVSQDLGPVLELNPIYAVGKRLHHDPLHERGALGHER*
Ga0120139_10022505	3300012019	Permafrost	VGACTIGDVSQDFRPVLELNPVDTVGKRLHHDPLHEWEALGHERRLYQTPGNGG*
Ga0137389_104185811	3300012096	Vadose Zone Soil	VGAGAIGYVGQDLGPVLELNPVYTVGKRLQDDPLNE*
Ga0137364_101147254	3300012198	Vadose Zone Soil	MGARAIGDVGEDLRPVLELNPVDTVGKRLHHDPLHE*
Ga0137382_100553471	3300012200	Vadose Zone Soil	PGEMGARAIGDVSEDLRPVLELNPVDTVGKRLHHDPLHE*
Ga0137399_104556021	3300012203	Vadose Zone Soil	VGAGAIGDVSEDLGPVFELNPVDAVGKRLHHDPLHE*
Ga0137399_106675541	3300012203	Vadose Zone Soil	KVGACAIGDVSQDLGPVLELNPVDAVGKRFDHDPLHERGALGHER*
Ga0137399_107753422	3300012203	Vadose Zone Soil	MAAYAIGDVSEDHCPVLELNPIDAVGKRLHHDPLHE*
Ga0137399_108372221	3300012203	Vadose Zone Soil	VGAGTIGDVSEDLGPVLELNPVDTIGKRLHHDPLHEWGALGHERR
Ga0137380_101361854	3300012206	Vadose Zone Soil	MGARAIGDVSEDLRPVLELNPVDTVGKRLHHDPLHE*
Ga0137377_100878724	3300012211	Vadose Zone Soil	VGAGAIGDVSEDLGPVLELNPVDAVGKRLHHDPLHE*
Ga0137377_102603832	3300012211	Vadose Zone Soil	VGAGTIGDMSEDLRPVLELNPVDTVGKRLHHDPLHEWGALGHEP*
Ga0137384_110701021	3300012357	Vadose Zone Soil	SEDLGPVLELNPVDAVGKRLHHDPLHEWGALGHEP*
Ga0137385_100019271	3300012359	Vadose Zone Soil	EPGEVGAGTIGDVSEDLGPVLELNPVDAVGKRLHHDPLHE*
Ga0137385_115895861	3300012359	Vadose Zone Soil	VGAGAIGNVGQDLGPILELNPVHTVGKRLQDDPLDE*
Ga0137360_104658543	3300012361	Vadose Zone Soil	MGARAIGDVSEDLRPVLELNPVDAVGKRLHYDPLHE*
Ga0137390_101620774	3300012363	Vadose Zone Soil	VGAGAIGDVSEDLGPVLELNPVDAVGKRLHHDPLHEWGALGHER*
Ga0137390_112459561	3300012363	Vadose Zone Soil	PCEVGAGTIGDMSEDLRPVLELNPVDTVGKRLHHDPLHEWEALGHEP*
Ga0134037_10576132	3300012372	Grasslands Soil	MGARTIGDVSEDLGPVLELDPIDTIGKRLHHDPLHEWGAL
Ga0134039_10970631	3300012374	Grasslands Soil	VGGQAIGDVSEDQRPVFELNPIHTVGKGLYDDPLHEWGA
Ga0134039_12453062	3300012374	Grasslands Soil	MGARTIGDVGEDLGPVLELDPIDTIGKRLHHDPLHE
Ga0134034_10290052	3300012375	Grasslands Soil	MGACAIGDVSEDLRPVLELNPIDTVGKGLYDDPLH
Ga0134029_10741161	3300012377	Grasslands Soil	VGGQAIGDVSEDQRPVFELNPIHTVGKGLYDDPLHE*
Ga0134026_11280762	3300012381	Grasslands Soil	MGARTIGDVSEDLGPVLELDPIDTIGKRLHHDPLHE*
Ga0134038_11649281	3300012382	Grasslands Soil	MGARTIGDVSEDLGPVLELDPIDTIGKRLHHDPLHE
Ga0134038_12737581	3300012382	Grasslands Soil	VGAETVGDVGEDQRPVLELNPIHTVGKRLFDDPLHEWGA
Ga0134033_11095661	3300012383	Grasslands Soil	VGGQAIGDVSEDQRPVFELNPIHTVGKGLYDDPLHEWGALG
Ga0134033_11380312	3300012383	Grasslands Soil	VGAGAIGNVSQDLGPVLELNPVDAVGKRLQHDPLH
Ga0134033_12709261	3300012383	Grasslands Soil	MGAETIGDVSEDLRPVFELDPVHTVGQRLDHDPLHEWGAL
Ga0134040_10822452	3300012389	Grasslands Soil	MGARTIGDVSEDLGPVLELDPIDTIGKRLHHDPLHEWGALGHE
Ga0134040_11778151	3300012389	Grasslands Soil	MGARAIGDVSEDLRPVLELNPVDTVRKRLHHDPLHEW
Ga0134040_12545781	3300012389	Grasslands Soil	MGACAIGDVSEDLRPVLELNPIDTVGKGLYDDPLHEWGA
Ga0134040_12853912	3300012389	Grasslands Soil	VGGQAVGDVSEDQRPVFELNPIHTVGKGLYDDPLHEWGA
Ga0134041_12476031	3300012405	Grasslands Soil	MGACAIGDVSEDLRPVLELNPIDTVGKGLYDDPLHEWGALGHEPRLYQTA
Ga0134041_12959232	3300012405	Grasslands Soil	VGGQAIGDVSEDQRPVFELNPIHTVGKGLYDDPLHEWGALGHERRLYQ
Ga0134045_12835841	3300012409	Grasslands Soil	VGAGTIGDVSEDLGPVLELNPVDAVGKRLHDDPLHEW
Ga0137397_110026532	3300012685	Vadose Zone Soil	VGGQAIGDGSEDQRPVFELNPIHAVGKGLYDDPLHEWGAL
Ga0137395_101962813	3300012917	Vadose Zone Soil	EDLRPVLELNPVDTIGKRLHHDPLHEWGALGHER*
Ga0137396_102216854	3300012918	Vadose Zone Soil	VGAGAIGDVSEDLGPVLELNPVDAVGKRLHHDPLHEWGA
Ga0137359_101404804	3300012923	Vadose Zone Soil	SEDLRPVLELNPVDAVGKRLHHDPLHEWGALGHEL*
Ga0137419_104790532	3300012925	Vadose Zone Soil	MGACTIGDVSQDLGPVLELNPVNAVGKRLHDDPLHERGALGHER*
Ga0137404_111031301	3300012929	Vadose Zone Soil	VGACTIGDVSQDLGPVLELNPVNAVGKRFDHDPLHERGA
Ga0164303_102110952	3300012957	Soil	VGACTIGDVSQDFGPVLELNPVNAVGKRFDHDPLHERGALGHER*
Ga0164301_109028632	3300012960	Soil	MGACTIGDVSQDFRPVFELNPVYAVGERLHHDPLHE*
Ga0120106_10830562	3300013427	Permafrost	SQEPGKVGACTIGDVSQDLSPVLELNPVNAIGKRLDHDPLHERGALGHER*
Ga0120179_11435022	3300013763	Permafrost	QALGPVLELNPVHTVGKRLHHDPLHERGALGHER*
Ga0134075_102427792	3300014154	Grasslands Soil	MGARAIGDVSEDLRPVLELNPVHTVGKRLHHDPLHE*
Ga0167652_10137523	3300015164	Glacier Forefield Soil	VGACTIGDVSQDLSPVLELNPVNAVGKRFDHDPLHERGALGHER*
Ga0184618_100116522	3300018071	Groundwater Sediment	MGACTIGDVSQDFRPVLELNPVYAVGERLHHDPLHE
Ga0066655_100743954	3300018431	Grasslands Soil	MGARAIGDVSEDLRPVLELNPVDTVGKRLHHDPLHE
Ga0066667_100110251	3300018433	Grasslands Soil	VGAGAIGNVGQDLGPILELNPVYAVGKRLQDDPLYE
Ga0066662_110652303	3300018468	Grasslands Soil	VGAGAIGNVGQDLGPVLELNPVYTVGKRLQDDPLDE
Ga0066669_101151235	3300018482	Grasslands Soil	VGAGAIGNVGQDLGPILELNPVHTVGKRLQDDPLYE
Ga0193756_10008252	3300019866	Soil	MGACTIGDVSQDFRPVLELNPVHTVGERLHHDPLHE
Ga0193713_11232722	3300019882	Soil	MGACTIGDVSQDLRPVLELNPVYAVGKRLHDDPLHERGALGH
Ga0193725_10355093	3300019883	Soil	VSQDLGPVLELNPVNAVGKRLHHDPLHERGALGHER
Ga0193731_10199511	3300020001	Soil	GDVSQDLGPVLELNPVNAVGQRLHHDPLHERGALGHER
Ga0215015_101798995	3300021046	Soil	VGAGTIGDVSEDLRPVLELNPVDTVGKRLHHDPLHEWGALGHE
Ga0210404_105175312	3300021088	Soil	MGACTIGNVSEDLGPVLELNPVDAVGKRLHHDPLHERGALGHER
Ga0210404_108624262	3300021088	Soil	MGTGAVGDVSEDLGPVLELDPVHAVGKRLHHDPLHERGALGHER
Ga0179585_11537661	3300021307	Vadose Zone Soil	VGAGTIGDVSEDFGPVLELNPVDTIGKRLHHDPLHEWGA
Ga0210384_102106471	3300021432	Soil	MGAGTIGNVSEDLGPVLELNPVHAVGKRLHHDPLHERGTLGHER
Ga0210384_105575032	3300021432	Soil	MGACTIGNVSEDLRPVLELNPVDAVGKRLHHDPLHERGALGHER
Ga0210410_101116525	3300021479	Soil	VGAGAIGHVSEDLGPVLELNPVDAVGKRLHHDPLHEWGA
Ga0213853_104959012	3300021861	Watersheds	VSAGTIGDVSEDLCPVLELNPVDAVGKRLHDDPLHE
Ga0242648_10713162	3300022506	Soil	MGACAIGDVSEDLCPVLELDPVDTVGKRLHHDPLHE
Ga0212123_10000044133	3300022557	Iron-Sulfur Acid Spring	MGAGAIGDVGEDFRPVLELNPVDTVGKRLHHDPLHEWGALGHEP
Ga0248483_1119633	3300022691	Soil	VGAGTIGDMSEDLRPVLELNPVDTVGKRLHHDPLHEWGALGHEP
Ga0207929_10038671	3300025505	Arctic Peat Soil	DVSQDLGPVLELNPVHAVGKRLHHDPLHERRALGHER
Ga0207929_10085861	3300025505	Arctic Peat Soil	VGACTIGDVSQDLSPVLELNPVNAVGKRFDHDPLHERGALGHER
Ga0209483_11942243	3300025862	Arctic Peat Soil	VGACTIGDVSQDLGPVLELNPVDTVGKRLDHDPLHERGALGHER
Ga0207684_10000002395	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VGAGTIGHVSEDLGPVLELNPVDAVGKRLHHDPLHE
Ga0207646_100775256	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VGAGTIGDVSEDLRPVLELNPVDTVGKRLHHDPLHE
Ga0207646_100943245	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VGAGTIGDVSEDLGPVLELNPVDTVGKRLHHDPLHEWGALGHEP
Ga0207646_102305353	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	EEPCEVGAGTIGDVSEDLRPVLELNPVDTVGKRLHHDPLHEWGALGHER
Ga0207664_110466662	3300025929	Agricultural Soil	MGAGAVGDVSEDLGPVLELDPVHAVGKRLHHDPLHE
Ga0209234_10111231	3300026295	Grasslands Soil	RPVLELNPIHTIGKRLFDDPLHEWGAWGHERRVYQRPD
Ga0209055_10299973	3300026309	Soil	MGAGAIGDVGEDLRPVLELNPVDAVGKRLHHDPLHE
Ga0209239_11455732	3300026310	Grasslands Soil	VGAGAIGNVGQDLGPILELNPVYTVGKRLQDDPLYE
Ga0209471_100038913	3300026318	Soil	VGAGAIGDVSEDLGPVFELNPVDAVGKRLHHDPLHE
Ga0209471_11187553	3300026318	Soil	VGAGTIGDMSEDLGPVLELNPVDTVGKRLHHDPLHEWGALGHER
Ga0209131_100614911	3300026320	Grasslands Soil	VGAGAIGYVGQDLGPVLELNPVYTVGKRLQDDPLDE
Ga0209687_10864603	3300026322	Soil	VGAETIGDVGEDQRPVLELNPIHTIGKRLFDDPLHEWGAWGHERR
Ga0209802_100819411	3300026328	Soil	VGAGAIGDVSEDLGPVLELNPVDAVGKRLHHDPLHE
Ga0209159_10017793	3300026343	Soil	MGARAIGDVGEDLRPVLELNPVDTVGKRLHHDPLHE
Ga0257170_10119963	3300026351	Soil	VGAGAIGNVSEDLGPVLELNPVDAVGKRLHHDPLHEWEALGHEP
Ga0257167_10631872	3300026376	Soil	VGAGTIGDVSEDLRPVLELNPVDTVGKRLHHDPLHEWGALGQ
Ga0257169_10367912	3300026469	Soil	GTIGDVSEDLRPVLELNPVDTVGKRLHHDPLHEWGALGHEP
Ga0209378_10288341	3300026528	Soil	VGAETVGDVGEDQCPVLKLNPIHTVGKRLFDDPLHEWGAWGHER
Ga0209648_100269476	3300026551	Grasslands Soil	VGAGAIGHVSEDLGPVLELNPVDAVGKRLHHDPLHEWGALGHEP
Ga0209213_10283373	3300027383	Forest Soil	VGAGAISHVSEDLCPVLELDPVHTVGKRLHDNPFHER
Ga0208984_10138943	3300027546	Forest Soil	MGACTIGDVSQDFRPVLELNPVYAVGERLHHDPLHD
Ga0209220_10128405	3300027587	Forest Soil	VGACTIGDVSQDLGPVLELNPVNAVGKRLYHDPLHERGALGHER
Ga0209388_10240754	3300027655	Vadose Zone Soil	VGAGAIGNVSEDLGPVLELNPVDAVGKRLHHDPLHE
Ga0209118_100222514	3300027674	Forest Soil	VGACTIGNVSEDLGPVLELNPIDAVGKRLHHDPLHERGALGHER
Ga0209011_10772563	3300027678	Forest Soil	MGACTIGDVSQDFRPVLELNPVYTVGERLHHDPLHERGALGHERRLYQKTA
Ga0208991_10267804	3300027681	Forest Soil	MGACTIGDVSQDLSPVLELHPVHAVGKRLHDDPLHERGALGHER
Ga0208991_10911981	3300027681	Forest Soil	MGACTIGDVSQDFRPVLELNPVYAVGERLHHDPLH
Ga0208991_11522992	3300027681	Forest Soil	VGAGTIGDVSEDLGPVLELNPVDTIGKRLHHDPLHEWGALGHER
Ga0209180_100105312	3300027846	Vadose Zone Soil	VGAGTIGHVSEDLGPVLELNPVDAVGKRLHHDPLHEWGALGHEP
Ga0209180_102245422	3300027846	Vadose Zone Soil	VGAGTIGDMSEDLRPVLELNPVDTVGKRLHHDPLHEWEALGHEP
Ga0209180_102640223	3300027846	Vadose Zone Soil	VGAGTIGHMSEDLCPVLELNPVDAVGKRLHHDPLHEWG
Ga0209166_100169872	3300027857	Surface Soil	VGAGAIGHVSEDLGPVLELNPVYTVGKRLQHDPLHE
Ga0209283_100107704	3300027875	Vadose Zone Soil	VGAGAIGHVSEDLGPVLELNPVDAVGKRLHHDPLHE
Ga0209590_100093444	3300027882	Vadose Zone Soil	VGAGTIGDVSEDLRPVLELNPVDTVGKRLHHDPLHEWGALGHEP
Ga0209069_110079852	3300027915	Watersheds	VGACTIGDVSQDFDPVLELNPVDAVGKRLHHDPLHEWGALGHER
Ga0137415_102532014	3300028536	Vadose Zone Soil	VGAGTIGDVSEDFGPVLELNPVDTIGKRLHHDPLHEWGALGH
Ga0307504_100784212	3300028792	Soil	VGACTIGDVSQDLGPVLELNPVYAVGKRLHDDPLHERGALGHER
Ga0222749_101079392	3300029636	Soil	MGAGTIGNVSEDLGPVLELNPVDAVGKRLHHDPLHERGTLGHER
Ga0308206_11696622	3300030903	Soil	VGACTIGDVSQDLGPVLELNPIYAVGKRLHHDPLH
Ga0318555_107654182	3300031640	Soil	VTGEEPGKVGAGAVGDVSEDLGPVLELDPVHAVGKRLHHDPLHE
Ga0307374_1000045083	3300031670	Soil	VGACTIGDVSQDLGPVLELNPVNAVGKRLDHDPLHERGALGHER
Ga0307477_100533611	3300031753	Hardwood Forest Soil	MGAGAVGDVSEDLGPVLELDPVHAVGKRLHHDPLHERGPLGH
Ga0307471_1001854242	3300032180	Hardwood Forest Soil	MGAGAVGDVSEDLGPVLELDPVHAVGKRLHHDPLHERGALGHERRVYQRLR
Ga0307471_1004148622	3300032180	Hardwood Forest Soil	MGAGAVGDVSEDLGPVLELDPVYAVGKRLHHDPLHE
Ga0307472_1001002004	3300032205	Hardwood Forest Soil	VGAGAIGNVGQDLGPVLELNPIHTVGKRLQDDPLNE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F028604

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences